Array 1 138246-139337 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHYN01000005.1 Streptococcus constellatus subsp. constellatus strain ATCC 27823 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 138246 36 100.0 30 .................................... AAATGTAATATCGCTACTACAAATGACTGT 138312 36 100.0 30 .................................... CTTTGATTACATTTTGAAGGCGCAAAATAA 138378 36 100.0 30 .................................... TGCTCTATATCTTGAGCAAGCCGGATGACT 138444 36 100.0 30 .................................... TTCATGTTGATAATTACTTCGACGATGTTT 138510 36 100.0 30 .................................... TAAAACGAAACCATGCAAATATCCTTATTC 138576 36 100.0 30 .................................... AGCAAGTCTTGCCAACCATTGGCTACCCTA 138642 36 100.0 30 .................................... GGTTGGATGTGGACTTGGTCAATGGACTGG 138708 36 100.0 30 .................................... AACATTGCAAGAAATCTTAAAAGAGATGAC 138774 36 100.0 30 .................................... TGGTGATGGCTCTGGAGCTAAGTCACGCTT 138840 36 100.0 30 .................................... TTCAGTAAATGAAGATTCTATAAAATCTTC 138906 36 100.0 30 .................................... CTTACGTAGACGGTATTTCTTCGCATTTAT 138972 36 100.0 30 .................................... AAAGCTCCAGCAATGATTGTCTTTCACGCT 139038 36 100.0 30 .................................... ATTTATCGTTATCGGTATGATAGCAGGCTA 139104 36 100.0 30 .................................... CGTCCTGTGCAACTCTATGCTCTTAACTGA 139170 36 100.0 30 .................................... TGGTGGTAAAGGAAAATCTTCATCTTTTCG 139236 36 100.0 30 .................................... ATGAAACATCACTAGCATCTGGCGGTACAA 139302 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTGAGTGATACTGTTTTTGAGAAAAGTTTAGAGGTTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTGTCATGTTATCTGTCTGAACATAAACTAGCTAAATTGGTGGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTATGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : CTAACCTATTCTTTTCTTCCAAATTCCCAAAATTCCCAAAAATTCAGACACAAACCATCTGATTGTAAAGCTTGCAAATTTTTTTAATCGTGCTATAATATTTCTTAGAGACATACCGCTGGTTGGAATTTTTTAGAGAGCGCGTGGGGCTGGAAAGCGTGTAGAGGAAGGCAGTTGGGACTACTCTAAAGTAACTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAGTTTTTGTTGTACATAAATGAAGGTGGAACCACGTTGCGACGTCCTTTTATGGATGCCGCTTTTTATTTTGTCAGAAGGAGGAAGAATGATGCTTTATATGATTGGCGGATCGCCTTGCAGCGGGAAGTCAACAATTGCTTCACTTCTTGCTAGACAGTATCAGCTGCTTCATATCAAGCTGGATAATTTGGTGGACGAGATGATGAGTCAAGCAAGTGTAGATTCACAGCCGATTTGCCTTCTTAGACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 8050-9336 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHYN01000004.1 Streptococcus constellatus subsp. constellatus strain ATCC 27823 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8050 32 100.0 34 ................................ AGGAACGGCCACTCGACGTTGGCCCATTTTGACT 8116 32 100.0 35 ................................ GTTGCATAAAAGCTGTTATTACCTGTCAAATCCAG 8183 32 100.0 34 ................................ ATGGACGAAAATGGCGACAAGTTACTAGCTAAGA 8249 32 100.0 33 ................................ TCTAGCAAATATAGCCCATGGCAGTCTGACTTT 8314 32 100.0 33 ................................ CAAAATGCTTGTGAGTGCACCTTGCATCAATTT 8379 32 100.0 34 ................................ ATCGATAAAACGTTTTTGCCAATCTTCCATTTTT 8445 32 100.0 34 ................................ ACTCATGGATTGGGATAGCGACAACGTGATTACA 8511 32 100.0 33 ................................ TACAAACAAAAATTAAAGAAAACAGTCTACACA 8576 32 100.0 34 ................................ AGACAAGAGGAGCCTTAAACAATGCGCATGATGT 8642 32 100.0 34 ................................ ATAAAGCTAGTGTGTACGATGTGATTGAGTTATT 8708 32 100.0 34 ................................ TTCGACATTTAATCACTCCCCGTAAATAGCAACA 8774 32 100.0 34 ................................ AGACCTGTATAGCTCGTTTGAAATGATGTATTTC 8840 32 100.0 34 ................................ TATTTCCAAACTCTGTTATTTTACTAAAAAATGT 8906 32 96.9 34 ........T....................... AATAAAAGTTTTGGAAAAACTATCTTTAAATTTA 8972 32 100.0 34 ................................ ATCTTGATTGGATATTAAATTTAAAGACCGATTT 9038 32 100.0 36 ................................ ATTAAAAATATCTATTTTTTGTAACGTTGGATTTTT 9106 32 100.0 35 ................................ AAAATTTGCGAAAATGCTTGCCTTTATCGGCGAAG 9173 32 100.0 35 ................................ TGAAATAATAAAATAAATATCTTGTTTTTTCAAAG 9240 32 100.0 33 ................................ CGGATCGCCTAGCTCATAAACTCCCGCTGCTGA 9305 32 87.5 0 ......................AA...A.T.. | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.2 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CAAAGCAATTCGTGGAGAATTAGAATCCTATCCGCCATTTTTAATCTAGGAGTAAATTTATGATGGTTTTAGTAACTTATGATGTCAATACGGAAACTTCCGCAGGCAGGAAACGTCTGAGGCATGTCGCAAAACTTTGTGTTGATTATGGTCAGCGTGTGCAAAATTCCGTTTTTGAATGCTCAGTAACTCCGGCTGAATTTGTAGAAATAAAAAATAAACTGTTGACAATCATTGACCAAGAATCAGATAGTATACGATTTTACTTGCTTGGTAAAAATTGGCAAAATCGTGTAGAAACCCTTGGTCGAAATGACAGTTATGACCCTGATGTCGGGATATTACTTTTATAAAAACTTGTGTGCGAACCTAGGTTGCACATCAAAACCTAGGACATTCGCGCATAAAAACAGAATGATAGTGGCAAAAATCCAGTTTTTATTAAATGAAATAGCTCAATAGATTCTTAGATATAGTCACAAACGGTGCAACCATGCGCT # Right flank : TACACCTAAACTCTTGTTTGCTTTCAAAAACATGCTAAATTTTTCCGAGATATCTTGGCTTTGGATGATGCCAAAATTTTGCAGAAATGTCTCGAGTTTTTGACTGCATTTTGCGAAACTCTCTTACTTGATGGAGAAAATGACCTGTCTAGTGAGGAACTGTACCAAAAATTAGGTTTGGATAAATAGCGGAGTAAACTAACATCTGAGGACAGAAAGGTTCCAACTATACATATCTGAAGTAGAGTACCTGAAATAATAAAGTTCCCTATATTTCCAACAAATAAGTCAACATTACTTCAACAAAAAAACAGCTCAATAGTAAAGCTGTTTTTTTTACCTATTTGAAAGTTTAAAATTGTGATTGGTCTTGTATTTACGGATGATTAGACGTTTAAACTTCAACATTATAAAGATCTGTTGATAAATAGCGTTCGCCATTATCTGGAGCAAGAGCTAGAATTTTTTTACCTGTTCCTAGTTTTTTGGCTACTTCAAGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //