Array 1 37933-32536 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUR01000003.1 Bifidobacterium pseudolongum subsp. globosum strain 2029B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37932 29 96.6 32 ............................A GATCTTACCCCACTGCACAAGATCTTCGATGG 37871 29 100.0 32 ............................. GGCCGTTGGTGGTGCGAATCATGATGCTGCCG 37810 29 100.0 32 ............................. CGCTCTCTGGAGACCAGGTGGAGACCGGCGAC 37749 29 100.0 32 ............................. TGCCAACAAACCCAGACCAACACGGGAAAGGA 37688 29 100.0 32 ............................. ACGTCGCTTCCCAGCTCATTGGGATTCACCCC 37627 29 100.0 32 ............................. CGGCTTCAGTCGCAGGGCCCCACGAGCAGCGA 37566 29 100.0 32 ............................. GTGACGGGCTCGTCACACCACTCAACGTGCTC 37505 29 100.0 32 ............................. CCACGCTCATGCCATGTGAGCACCATTTCGAT 37444 29 100.0 32 ............................. AACATGCTCTACGGCACCTACCTCGACCCGTA 37383 29 100.0 32 ............................. GGTGTCCATAGTAACGACACCCTTTTGCCGGT 37322 29 100.0 32 ............................. GACTGGGCACGCGAGACGCGGCGAAGCGCGCG 37261 29 100.0 32 ............................. GCGATCTCGAAGAGGAGCGTCCACATCTCCTT 37200 29 100.0 32 ............................. GACTACCAGCGGCTCAAGGACGCCGAGGCTCG 37139 29 100.0 32 ............................. TTGGTGATATGCCTGACGGCCTTACCATCCCT 37078 29 100.0 32 ............................. CTGCGGCCGCTGATCTGGGCGACGTCGCCGAC 37017 29 100.0 32 ............................. TTTCGTCGCGTGAGCGAAGCCGCGATACGCAA 36956 29 100.0 32 ............................. TATAGCATATCAGCTACTCGTTGTCAACTTCA 36895 29 100.0 32 ............................. TCGACGCCGGCCTGCATCATCGTCGGCAGGCT 36834 29 100.0 32 ............................. ACGGCGTGACATGGGAAGGCCAAGTGAAGCGA 36773 29 100.0 32 ............................. TACTGTTCACCAGCCTGCAAGCAACGCGCATA 36712 29 100.0 32 ............................. TCCGGCGGCGTGTTGAACACCTCGTTGGACGG 36651 29 100.0 32 ............................. GACCTCAAGCTCACGGATCAGACCATCCTCGG 36590 29 100.0 32 ............................. CCAACGGCTCCGCTTGTGTGCTTGTCCTGTCA 36529 29 100.0 32 ............................. CATCATCCTGAGCGGGGATGGGTCGCGGGCTG 36468 29 100.0 32 ............................. TGCGTCTGATGATCCGTTTGGGCGCCGAATGT 36407 29 100.0 32 ............................. TCCATTTGCTTGCCGTGGCCGGCTACCTTGGT 36346 29 100.0 32 ............................. CAGCTCGCGAACGTGGACGATTGGACCGGGCG 36285 29 100.0 32 ............................. CGCAGTGACCGCGCTGCTCGACCGTGCGCGAC 36224 29 100.0 32 ............................. TCCTCGAAAGCTATTAGACAACCTGCGCGGGA 36163 29 100.0 32 ............................. GAAGCCGTCAAGGCGTCCGGCAGTGGCGAGAC 36102 29 100.0 32 ............................. CGATCGCCTGCGGCAACTTCCACAACTGGCGC 36041 29 96.6 32 ..............T.............. GTGACTTCGGTGGTGGGGGTTAGAGCGGGGGA 35980 29 96.6 32 ..............T.............. AACGTGCTCTCGGCGGTGCCCTCGGTCGAGGT 35919 29 96.6 32 ..............T.............. TCGCAGTCCGGGTCGAATGTCTCGCTCACGTC 35858 29 96.6 32 ..............T.............. AAGTTCATCATCACCTACACGGACGGCCGCGA 35797 29 96.6 32 ..............T.............. GCACAACTCGCCCTGCTGCCCGTCACCCCCGG 35736 29 96.6 32 ..............T.............. ACGCTAGCACATTGACACGCGGACGCGACACA 35675 29 96.6 32 ..............T.............. ACGCGACTTGCCTAACAGGTCGGTGTAGGCCT 35614 29 96.6 32 ..............T.............. TGAAGGGCGGCGTGCGTCATCCGGCCGCCGAT 35553 29 96.6 32 ..............T.............. AAACGCGTCGACGACGCGCACGCCACACTGCT 35492 29 96.6 32 ..............T.............. GTTGCAAACCAAATCAGTTTGATGATGAATCA 35431 29 96.6 32 ..............T.............. GCGGGCGATGGTCTGTGTGCTGGTGGGGCTGA 35370 29 96.6 32 ..............T.............. ACGGTGCGGCATACGTCCTCCCAGACGTTTTC 35309 29 96.6 32 ..............T.............. TGCCGGCCCCCACTTTCGAGGACGGCCGGAAT 35248 29 93.1 32 ..............T.............C GGTTTCTGAGCGACGGGTATCGGATGTTCCAG 35187 29 96.6 32 ..............T.............. TACTCGGCCTCCTCCGGTGTCGGGACGTAATC 35126 29 96.6 32 ..............T.............. ACCACACAGGGCAACTGGTACGTCAACCCTGA 35065 29 96.6 32 ..............T.............. GCCGGTCGGCGTACGCATCGCCAAACATGCGG 35004 29 96.6 32 ..............T.............. CAGTGACTCATCGACGACAAGCGTCATCTGGA 34943 29 96.6 32 ..............T.............. ATCAGCTTCCCGCCTGGCGTTCCCGTATCGAT 34882 29 96.6 32 ..............T.............. GCCGATAACGAAGACACCACGGCACGCAGTGG 34821 29 96.6 32 ..............T.............. ACTCAAAGCAGACGACCCGAGAGACCTCTCCT 34760 29 96.6 32 ..............T.............. AACTCGGTCAGGCCTTCGGGGATGGGAACGGT 34699 29 96.6 32 ..............T.............. AATCCGTGGTGGAAACGCCACAGGACGAAACG 34638 29 93.1 32 ..............T.............A TCGGGTGGATTCGACTGTACGGCCGAGTCTAC 34577 29 93.1 32 .............AT.............. TAGGTTTCCACGACTTCCTTCTTGGATTCGAG 34516 29 96.6 32 ..............T.............. GGGAGATTGAGGAGGGGGTCGGGAGTCAGAAA 34455 29 96.6 32 ..............T.............. GTGCGCGGCATCAAGAACACCGTGTTCGGCGC 34394 29 96.6 32 ..............T.............. CCGGCAAAGGCCGTGACGAACGGTTCCGCATG 34333 29 93.1 32 ..............T.............A TCGCGGAGCTCGTGCAGAACAATCCGCGCGTA 34272 29 96.6 32 ..............T.............. TACCGGCCGAAGAAATTCCCGCTCGCGAAGTA 34211 29 96.6 32 ..............T.............. GAGTTCTACCGGCGCGCCAAGCAATATCGCGC 34150 29 96.6 32 ..............T.............. GTGCTCGACTCCCTGTTGCAGTGGTTCAGCCG 34089 29 96.6 32 ..............T.............. ACCCAGTACACGGTACCGGTGGAGAACATCGA 34028 29 96.6 32 ..............T.............. GTTTCGCATGGTCGCGGCCGCCGTACAAGTAT 33967 29 96.6 32 ..............T.............. CGTGTCTATGACCCACATACGATGCTCACTCA 33906 29 96.6 32 ..............T.............. CTCAACGGCCATAAGCGCATCACCCTCGATGA 33845 29 96.6 32 ..............T.............. ATCCCGCTCGACCCCACACCCGCGCAAGAACG 33784 29 96.6 32 ..............T.............. CAATGGTGGAGGTGTCGTCGAGGGTAAAAAAC 33723 29 96.6 32 ..............T.............. TTGACATGCGTCTTTAAGTATGTACACTGTAA 33662 29 96.6 32 ..............T.............. TCCAATGACGGGTCATGGCGTGGGAAATACTT 33601 29 96.6 32 ..............T.............. ACGGCGCGTACCTGACGAGCAATGAGCGGATC 33540 29 100.0 32 ............................. AGTTTTGACCATGTTCAGCCGTTCCTCGGAAA 33479 29 100.0 32 ............................. AACACGTTCTGGTCGGCGCCCGTGTTGTTGGT 33418 29 96.6 32 ..............T.............. GATGTTCGACAGGTCGGTGAGCAGTTTGCGGC 33357 29 100.0 32 ............................. GTAACACCTCCACGAACGAGGTCGACGCCCAG 33296 29 100.0 32 ............................. TCCCCAGACGGCGGGTCCGCCAGCACCAAGAA 33235 29 100.0 32 ............................. CTCATAGCCAGAACAACTGAATAGAGTGATTG 33174 29 96.6 32 ...C......................... TGTGTCGCCGACCATGGTGCGGACGGTATCCC 33113 29 100.0 32 ............................. AACAATCCCGTGAACGTTTCGCTTGGCAAGAC 33052 29 100.0 32 ............................. CAGGGCCACATGAAGGCCGCGGTGGATACCGC 32991 29 100.0 32 ............................. TGGTGGACGCCACCCCAACGCCACCCACACCA 32930 29 100.0 32 ............................. AAGGAGAATCCGACCATGCACATCATCTTCCG 32869 29 100.0 32 ............................. CGGCCAAAGCGGCCAAAGCGGCCAACGATTTC 32808 29 100.0 32 ............................. GTTCTTAAAACCTTTCTTTCTATAAAAAGGGC 32747 29 100.0 32 ............................. TTCCGCTGCAAGCAGCTCTCCGACGGGCGAAT 32686 29 100.0 32 ............................. AACTGCATCATGCCCCAGCTGAAAGGAGAATA 32625 29 100.0 32 ............................. GCCACCAAGGCCGCGGCCGTACTGCGCAAGGT 32564 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 89 29 98.2 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GATTGTCATCGTGCTGACGGCTGCGCCTCCCAAGATACGAGGTCATCTCACACGATGGTTGTTTGAGATATCTCCAGGTGTGTATGTGGGAAAAGTATCAGCCCGTGTTAGAGAGTTGATTTGGGAGCAAATCCTTGACAATATCCGAGATGGGCGCGCCGTAATGGTATATTCGGCGAACAATGAACAGGGACTGGAGTTCAAAACCTACGGACAGGAGTGGTCGCCTGTTGATTTTGAGGGCCTTGAGCTGATTATGAGGCCGCATAATCAGGGCGAATCCAGCGGGAAATCTCAGGGCGCATCTCGTAGAAAAGGTTGGAGCAATGCATCGCGATATCGTCGTTTTGGTAGATAGTTGTTGTTGCGATGTTAAACTGAGGATTGCGTGTCGACGTGAGGAAGTTTGGAACCATGATGACGTTAGCGAAGTGTGACCGGCTGTGCAAATCGAATTTTTCGAGTATTGTCGGAGTGCGTTTTGCTAATGGAATCAGACT # Right flank : CGGATACGCAAAAATCCGGCCACGAACTCGTGGCCGTGGAGCTCACTGACGTGCGAGCGAACGGCAGGAACGCGCAGCCACTGAGCCGAGCAATAAACTATATTGAACAACCATGAACAGGTCTTGAAGCGCATACAACAACTGTTTGAACGTGCGCACAGGAAACGCATGCAGAAAAGAGCGAAACAATGACAGAACCAGTGCGCCTCAGAGGGTACTACCCGCCAGTCGACAAGAACGCACAATCGTTGCCGACATGCGAGCCCGACCCAGACCTGAAACCCGAACCATGGCTGTTACCCGACTTCATGTTCGACGACCCCGAAGACGAGACGGAGCCACCACAGAATAAAACCAAGCATACGCCGGACAGCGGCCCCGACGAGAAACCAGTAGACCATGACCAATGAGCTGGAACGCATCGCCCATAGCATGTTTGACCCGCATGCGCGGGGATGATGATGAACGAAGGTGAATGACATGCATGTCGCGGAGAAAAT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50763-49235 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUR01000003.1 Bifidobacterium pseudolongum subsp. globosum strain 2029B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================ ================== 50762 29 75.9 140 ..............T.TA..A.....TGT TGCTCTGATGTTAAACTGAGAGTCGGGTATTACTGCAGTGAAGAGGTTCGGAAATATGATGATGTTAGCGAAGTGTGGCCGACTGTGCAAATCGAATTTTTAGAGCATTGCTGGAGAGTGTTTTGCTAATGGAATCAGAC 50593 29 100.0 32 ............................. GCTCTTCGGCGGTGCTTTCCTCGCCGGCGAGG 50532 29 100.0 32 ............................. CTATATAGGTTATACCAGTATCGGAGGTGGCA 50471 29 100.0 32 ............................. CGCGCATCAGCAAAACGTTCCGTGTGGATCAG 50410 29 100.0 32 ............................. GCGCGCTCACCGAACTCGACGAACTGATCACC 50349 29 100.0 32 ............................. AGGAGCACCGGCATCGGCTGATTGGGTTACGG 50288 29 100.0 32 ............................. TACTGTATTTCGTGGTACAAAGACCCCTTGTT 50227 29 100.0 32 ............................. GTCTTGCCGACCACGGTGCTGGAGTTCTTCAG 50166 29 100.0 32 ............................. ATCAGCGAATCCCCGTCGAACCTGACCCGTGA 50105 29 100.0 32 ............................. CAGGACACGACCCTGACCAACGCGCAGAAAGA 50044 29 100.0 32 ............................. GATTTCGTCAAGATCTCCACCACCGTGCTCGA 49983 29 100.0 32 ............................. TAGGGTTCGGCCGCGCCCATGAGGTCGGCGCC 49922 29 100.0 32 ............................. CGAACCGGCGTCCGCTCATGCAGATCAAGGGC 49861 29 100.0 32 ............................. TCCGGAGCGGTCGGGTGGAACAAGACCGGCAG 49800 29 100.0 32 ............................. GAGCATGAGAACATGTGTGAGTATTGCGGCAA 49739 29 100.0 32 ............................. TGTAGGGGTGCCAGCATGCCGGAGTCGCTAAC 49678 29 100.0 32 ............................. GCCGCCGACGCAGCCAAGGACGACGCGTCGAC 49617 29 100.0 32 ............................. CGTGGAAACACCACAGGCGTTCGCGTTCCTAT 49556 29 100.0 32 ............................. TCGTTGGCGCAGATCCAGATCACATCGATGCG 49495 29 100.0 69 ............................. CAGTGTTTTCGGCCTCACAGATGACGGGTATGTTCCGACCCAACCCAAAGGAGGACATCATGGGCACTC 49397 29 89.7 105 ..........T..A.............A. AACATAGGCGTTAGAACATTATGCATTTGCGACTGCCGTACTCGGTACATCGGTTATGCACCATGCATGAGGCGGTGCGAGGACTCGCTATGTGGGAGCAAGTGA 49263 29 79.3 0 .GGC.T........T............A. | ========== ====== ====== ====== ============================= ============================================================================================================================================ ================== 22 29 97.5 42 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GATGCAAGCGATGAGTTGGCATATGCATGGCTTGAGCGGTATGCGTTTAATGTTTCGACAGCGAACAGCGATGCGCATGCTAAGAACTATTCATTGATGTTGGGCGCCGATGGTGTGCGGTTGTCTCCGGTGTACGATGCTGTCGCCACCAGATTCTGGCCTGAGTTTGTGCAAGAGTATGCGATGCCGATAGATGAGGACGTCCCGTTTGCCGAATGGGTGACGCCCTCCCAATGGGCTGAGCTGGCACGTAGGCATATGCTTGATGAGGAACGGGTGGTTGTTCTCGCTCGTACAATGGCTGCTCATGTGCTGACACAGGCTGAAACATTACGTGAAACACTGGCCTCGCAAGAATTCGACCGACTCATGGCATGTCTGCGTAAAGTCAACGAATCAATCGAACCCTTATTCTAGCGTTCGCGGACGAAGTACCTTTCTTTGCAGCTGCGGGTGCGGGATGGTCCGATTGCAGTCTTGCGATTATCGATCTACTCAAG # Right flank : CGCTTCAGCAAGATTCATTTTCAGCCTTGCGGTCGTGCGTTTTTAGGGGAGATACCGGTCAAAGTTACCATTGTAGGAAGTTCTAAGGCCGCGTTCACTCACGACAGTTCTTTCACCACGTTAACCTATGGGTGGGTATTCAGATCAAAGCATCATCTGGAACTTCGCCCCATGGTTTCGGCTTGTCGATATCGAGCCAATGCTGGATGTCTTTGATGCATTCAGCCAGACTCTGGGAATACGACTCCCCAAAATGGAAGTAAGGCTCGTGGAACCGTTCGACGTACTCATGTATCAGTTTTTGGAGCAGATACAAGGTTTGTATAGTGTTTGTTACGGTAAAATCGCAGTATAAGATGATGCAAGAGCGGAACGAGCCGGAAGGAGGAATCTCGTGACGGATATCAGAGATTTCCGCAGCATTGAGGAATACCGGCAGTGGCTGCGCATGAACCGGTTGTTTTCCCAGTATCCTATTGATCAGATCCGCCAGTGGGGGT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.84, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //