Array 1 160750-163756 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYH01000002.1 Neisseria sp. 83E34 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 160750 36 100.0 30 .................................... AAGGGAAACCCGCACCCCGCGTCCTGATTT 160816 36 100.0 30 .................................... CTGGCCGATATGCGCCAACACATCCATCTC 160882 36 100.0 30 .................................... GCGTGCCTCCTCCGGAAAACGCCCGTTATA 160948 36 100.0 30 .................................... GCGTGCCTCCTCCGGAAAACGCCCGTTATA 161014 36 100.0 30 .................................... GCGTGCCTCCTCCGGAAAACGCCCGTTATA 161080 36 100.0 30 .................................... TTGAAGCCCGATAAAGCGATTGAGTGGCTT 161146 36 100.0 30 .................................... CCCAATTAGTCATTTCCTGCCCCTTTAAAA 161212 36 100.0 30 .................................... AGGAAATGGCAACCATGCAGGCATTTTTGG 161278 36 100.0 30 .................................... CGGTTTTGATACCATCCCGGGCAGCGTTCG 161344 36 100.0 30 .................................... AAAAACGGTGATAACCGCATTACTCGCTTC 161410 36 100.0 30 .................................... AATAATGCGGAGGAGTGGGCTGTGTCTTCT 161476 36 100.0 31 .................................... TGCGGGAGATATTTAATCCACTTTATCGGCA 161543 36 100.0 30 .................................... TCCTGTCATGGTGTATGGCAAGTTTCCAAG 161609 36 100.0 30 .................................... AGCAGCCTCACCAACAACAATACCAGCTAT 161675 36 100.0 30 .................................... AGCAGCCTCACCAACAACAATACCAGCTAT 161741 36 100.0 30 .................................... CGTAAAGATGCGTGCCGCTCCAAATACTCG 161807 36 100.0 30 .................................... TGGATTCCCAATCGGAACCGACTTTTTCGC 161873 36 100.0 30 .................................... TCCCAACCCGTTTTTGCCGCGTTGCAACCG 161939 36 100.0 30 .................................... ATTGGGCATGGTGTTATGGCCACGCCACGC 162005 36 100.0 30 .................................... GCATCTATCAAATCAGGCAACAGGCTGCCG 162071 36 100.0 30 .................................... AGAGCCTTTGCTTGAGATTTTGAACCTGAT 162137 36 100.0 30 .................................... GGGTAGCCGAAGTAAAGCTAAGCAACCTGA 162203 36 100.0 30 .................................... TGCTTTTTCAGCATAGACCTTAGCAACATA 162269 36 100.0 30 .................................... CTCACCTTATCGTCTAAGCCTAACGTACTT 162335 36 100.0 30 .................................... ACGCATCAATGCGCTGGGACATACTTTCAG 162401 36 100.0 30 .................................... ATTAATGGCGGTATTCCCACAAATAAGTGA 162467 36 100.0 30 .................................... ACGCTTTAGACGGCCAAATGATAAGATTTT 162533 36 100.0 30 .................................... ACGCTGCATTTTTTTATCAGTCTTACGCCG 162599 36 100.0 30 .................................... AAAACCAAGTTATCACCCAATTCTTTCCCT 162665 36 100.0 30 .................................... CCTTTCGGCGATGCTGCCTGTTGAATTTGG 162731 36 100.0 30 .................................... CACTAATTTCATTGCTACGACAACTATCAT 162797 36 100.0 30 .................................... CAATATTCAGCTATTAGTTTTGCATCTTGC 162863 36 100.0 30 .................................... ACTAGCAGTTCCCCCCTCCCTCAAGATCAA 162929 36 100.0 30 .................................... CGGAAACATGGAGATAACGGCATTAATCAT 162995 36 100.0 30 .................................... GATAGTGGCCATGCTGAAAGCCGATGCGGG 163061 36 100.0 30 .................................... CGTGTTATTTTCCGTGTTGTTGATCGTGGT 163127 36 100.0 30 .................................... GAACATCACGGCAAACAGCATAAAAAACGA 163193 36 100.0 30 .................................... GCTTAAGGTTGTGTATGCAATATGACTATC 163259 36 100.0 30 .................................... TACGAAATGTTCGTATGCTTCGCTTTTTGC 163325 36 100.0 30 .................................... TTAACCTTAGAGCCACCACCCGAACCGCCG 163391 36 100.0 30 .................................... ATTGAATTTAAACAGGCGGTCTTACGTTAA 163457 36 100.0 30 .................................... TTTACCGGGCAGCGGAAGACGGCGTCAGTC 163523 36 100.0 30 .................................... ACTCGGATGCTGGGTTATAAGAATAATATC 163589 36 100.0 30 .................................... CATAATACTGATTGTTTGAGGCGAGGGGCA 163655 36 100.0 30 .................................... TAGGTGGATTAGTGTAGAAACAGCACTTCC 163721 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 46 36 100.0 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : AGCACACAAGGTTTGTGCCTGCTGGAGTTTCCCGAGCGCAGAATGCTGGAGAGCGAACTCTTGGCCGTGCAAAAAGCATTTCAGGCGGATTTTGTGTGGCGCGACACGGTGCGCAGCCAAACTTTGCAGCAAGAGTTGGATCTGTATTTTGAAGGCCGTCTGAAAAATTTCACCACGCCGCTCGATCCGGTCGGCACACCGTTTCAGCAGCAAGTTTGGCGCGAGCTGCAAAGTATTCCTTACGGTGAAACACGCAGCTACAAGCAGCAGGCGGAACGCATCGGCAAACCGCAGGCCGTGCGTGCCGTAGCCTCTGCCAACGGTCAGAACAAAATTTCCATCCTGATACCGTGCCACCGCGTGATCGGCAGCAATGGCGATTTAACCGGTTACGGCGGCGGCCTTGTGCGAAAAAGGGCGTTGTTGGAATTGGAAGGCGCAATGCTTGACTGAAAAAGGATAAGATGGAAGTTGATATAGTCATAATGGTGTGGAAAGTG # Right flank : TACCTCAACAGGGAAGCCTTATAAAATAAGGTTTCCCTGTTTTATTTTGGTTAAAAAAACGACTTTAAAAAAGCAAAAGTTGGTCGGCATTCACCTTTTTTTCGCGAGGTTTTGGCTCACCAATAAGCATAACCATGCTTGCATATTGTTTTTCTGTTACCTCTAAATAGCGGACTTGGCCTTCTTCGGGTAAATGTAGTAACAGTCTTTTGTGGTGTTTCTGCAACGCATCTCTTCCTTTTACAATGCGCGAATAAACTGACAATTGCAGCATGTGATAGCCGTCTTTCTGTAAAAATTTACGAAATTGATTGGCGGCTTTTCTCTTGGCTGTAGTGGTTACAGGTAAGTCAAAGAAAACGATTAAGCGCATAAATTGGGCCTCACTCATAATCATGTACCTTTAAGCTCAGCATTTGTGGCAACTTTAACAGCTTGGGCTTGTTTTGGCTGATGGCCGTCTGAAAAGATTGTATGGTGCGGTCTATGGCAGCCAATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 13667-12103 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYH01000005.1 Neisseria sp. 83E34 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 13666 32 100.0 34 ................................ GGCTTGCCTCTTGTGATTTTGCTACCCACTTTTC 13600 32 100.0 36 ................................ AAAAGCTTGCAGAATTAAGGCACGGCGGTTATACGC 13532 32 100.0 35 ................................ TTTTGGGGACTTAATCCAGCATAGGCTACAAACTG 13465 32 100.0 34 ................................ TTCACCCGAATATTTTTTACCCATCCTTACTACC 13399 32 100.0 35 ................................ CTGAACTTCGCCCATTTTGTCACAAGCAAGAATGC 13332 32 100.0 35 ................................ TACAACCAACATCAAAAATATTAAACAGCAATCAA 13265 32 100.0 36 ................................ ATGATTGAGGATGGTGCGCCATGCGATGAAGATGAG 13197 32 100.0 35 ................................ AATCGAAAGCATCAACATGGGCGTTGATGCAAACG 13130 32 100.0 34 ................................ CGCAGTGAGCGCGTGAATAAATTGGTTGGGGGCA 13064 32 100.0 35 ................................ TACGATGCGGCAAACGTGTATTGCACGTTTTATAA 12997 32 100.0 35 ................................ AAAAGATTCCCAGCTTTGGGAAGATACGCCGCCTA 12930 32 100.0 34 ................................ ATCAAATAAGCGCCGGTAAGCTCCTCTTGCGGAA 12864 32 100.0 34 ................................ ATGCTGCGGTCGTCGGTGTCTGTGTTTTGCTTCG 12798 32 100.0 35 ................................ AACCGCCAAGCCCGAGGGAAAACAGGGCAAGCCAA 12731 32 100.0 36 ................................ CAGCCAGCATCAAAAAAAATCCGCCGAGTGTTGAAG 12663 32 100.0 34 ................................ ACTGAAATCGAACCCTTTCCCAGTGCCGTACTCG 12597 32 100.0 35 ................................ GCAGATCCGGATATTCAGGGAAATATAGATCAGCG 12530 32 100.0 33 ................................ TTCCGACTAGTTTTGTTATGTCGCCGTAATTTG 12465 32 100.0 34 ................................ TTTTGTTTTTTTCGCAGTGCCACGCTTTTCGCGA 12399 32 96.9 35 ....T........................... ACGGCTTAATACGTACATGTACTCTTTGTCTGAAA 12332 32 100.0 34 ................................ ATCTGAAATTAACGGCACACCCGCACAATTGGAT 12266 32 100.0 34 ................................ AATGCAATTCGGCGCGGATTAGCTACCCGCGCCG 12200 32 100.0 34 ................................ GCAAACGGCCAAGGAAGTTTTACCGCCGCCACCG 12134 32 90.6 0 ...........C.....C......C....... | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.5 35 TCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : GATAAGGGGAAATAGTGTGTTGATGTTGATTACTTATGATATTTCGCTGGAAGACGCGGCAGGGCAGGCGAGGCTGCGGCGCATCGCCAAACATTGTTTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTTACGCCTGATCAGTGGGTAAAACTGAAAGCCAAGCTATTGGACACTTACCAGCCTGAAACAGACAGCCTGCGTTTTTACCATCTGGGCAGCAAATGGCGGCGCAAGGTGGAGCATCATGGTGCGAAGGAGGCGGTAGATGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACGTATGGTTCTCATGAAAATGCGGGGAGGTTGGCGATGCGGGATTGTTCTTTAACAATCAGGAAATTAGGAAAGCGGGTGTGGCGGAATCAGGCTGTGTTATACTCGCTTTTCGCATTTTCGGGGAGCTTTAGCGAATCAGGGCTAAGCAAGCCTTGATGGATAAAGGTTTCCGAGAAGGCT # Right flank : AGACAAGTTTCGCCGCTTTGCAGAATACGGCAACCAGCGCAGAAATAAAGAAAAACAAAGCGACCTATAAAAGGTCGCTTTCATTATCTTATTGTTCGGGTTTAGGTTTGATGTCATTAAGATGCAAACGTTTTGCTTCGATTTCCGCATCAGTTAGAGGATGGTCGGCATGTTCTTGCAATTCTTCTACTGAGTTTTCAATCACCAATTCACGCTCTTCGGCTTCCATTTCTGCGGCAGGGGTAACGTCGAAAGTGCTGTCGTTTTGATTTTGGCTCATAGCGTATCCTTGTTTTATTGTATTGAAAATGAAGAAACATAGTAACACGGCAAGTTGGCATTAGAAGGGTTGTTGCATATTTTTACGTCATATTAAAATCGGGTAAATTATGGTTAACCATTCAAATTATAGCTGTATCGATTTGCAGCGGTTTTATCGCTACATTTCCATGCCTGTCTGAAAAACAAAACGTGCAATCAATCACTTCCAAACCAGCAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //