Array 1 17-1073 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACUK01000271.1 Saccharolobus solfataricus 98/2 contig274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 17 24 100.0 41 ........................ CGTCCCGTTGTACATGCCGAGGAGGGCGTAAGAGCCGTTGG 82 24 100.0 43 ........................ AGAAAATAAGATAATCTTTTTCAAACCTAAACAAAACACCCAA 149 24 100.0 39 ........................ CGTGCTTAATTTCAAATAGAAAAAATAAAAAAACTCTGA 212 24 100.0 46 ........................ TATTTGACATTATAACCCAACCTGGTGAAATCCTCCAATAGCATCT 282 24 100.0 41 ........................ ATAAAATCGGCGTTTCAACATATTGTCCTTGAATATAATCA 347 24 100.0 37 ........................ CCTTAAAAAGTTACCTGAACCATTATTCTGCGTGATG 408 24 100.0 39 ........................ TTTTTTCAACTCATTTTCACGGTCGTAGTACGCATCACT 471 24 100.0 41 ........................ AATTCTGCGAAATAAATAAATCGTGTAAATACGCAAAAATA 536 24 100.0 40 ........................ TATCAACAAAATTATAGTTACAGTTCTGGAAAAAGAACAT 600 24 100.0 40 ........................ AATAAATGGAAGCATAATAGTGGTACATAATGGTGGGGAA 664 24 100.0 41 ........................ ATGAGGAGAACCCTCGCTGGCAGGGGAGAAGTCAGTACGGC 729 24 100.0 40 ........................ TTCATTCTCAAAATAATTTCCGAAAACAATTAGGAATAAC 793 24 100.0 41 ........................ AGTGAAATTCAACTAACTGCACAAACTCCAACACTTTTAAG 858 24 100.0 40 ........................ GTATGTAATGAACTTTATGAAGAAAATGCTAGATTATTTG 922 24 100.0 40 ........................ TTAAGCCGACGCTCCATTGATATCCATAGTCATACATTGT 986 24 100.0 40 ........................ GAGGCAATAGTGAATGGTGTAGTTATATGAGCAATGTGTT 1050 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 17 24 100.0 41 GCTAATCTACTATAGAATTGAAAG # Left flank : AGTGTTGTGGTATCTTG # Right flank : TAGAAGATGACTTCCTCCCCGCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 3913-9871 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACUK01000159.1 Saccharolobus solfataricus 98/2 contig160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 3913 24 100.0 38 ........................ TTTGTAAAACGTATAAGTCCCGTTAATGAGAAGACGGC 3975 24 100.0 40 ........................ CAACGCCAACTCCGCCAATTTCCGCATTGATGTTCGCTGG 4039 24 100.0 42 ........................ TCTTCAAACTTCCCACGGCACAACGGAGGCATGCAAATTATT 4105 24 100.0 40 ........................ GTAGTAAGCTTTCCTTCTTTATCCTCTAGACCGCTGTAGT 4169 24 100.0 38 ........................ AGCAATGTACGAACCACCACCTGCTCCAGTACTGTTCA 4231 24 100.0 39 ........................ GAACTGTCGTGGTGTTCATGAAATATGGGTATGCATATT 4294 24 100.0 39 ........................ GCAAAGAGTCCATTCAATAACACATATTTTGCACATAAG 4357 24 100.0 39 ........................ AACATCCTGATCTATACTACCCCTAATCTTTCTGTAGCT 4420 24 100.0 39 ........................ ATCTGGATGAGCTGTTGATCGGAGACATTAGTTAGGTCT 4483 24 100.0 40 ........................ CAGTCTGACTCTGAGTTGGCGAATTATTATGAGAAGCTAA 4547 24 100.0 39 ........................ CTATCCCCAAATCATTCTGCCTAATGCGTCAGGAGGGAG 4610 24 100.0 39 ........................ ACCACGAGCACGACCTCAAATATAACACCGCCAAAAATC 4673 24 100.0 40 ........................ TATCTTCCAGATGTCTCAGAAACGCCTTAAAATTATTGAT 4737 24 100.0 38 ........................ TACATTAGACCCTAGTTGGTTTATCGCTGGTAACGTCG 4799 24 100.0 40 ........................ ACACTTAGCGACATAAAAACCGCACTGACTTACAATTACC 4863 24 100.0 40 ........................ CGACATACATATATATGCATTTCCGTGGGAGTGTTACAAA 4927 24 100.0 37 ........................ ACATATGGTTGGTCTCCAACATTTGGTGAGTATATCT 4988 24 100.0 38 ........................ GCTTCTACCACGATCGTATAGTATTTCTTCCCTATCTT 5050 24 100.0 39 ........................ ACTTAAGACATTAAACGTTGCCCTAGGTGAACTAGGCAA 5113 24 100.0 38 ........................ AAACAAACGAGGTTAATTATTCTTAACTGTATCGTGAA 5175 24 100.0 38 ........................ CCTGGGACAAGTTCTGTTGTAGCTGAGGAGAAACGTAT 5237 24 100.0 41 ........................ TCTGATAGCACCAGACAAGTAAAAGCGTATATCCTAGTCAA 5302 24 100.0 39 ........................ AACATATTCTGGTACGGGTTCGCCATCTGGTACACCATT 5365 24 100.0 39 ........................ TTTCTGTATTTTCTCGCCCTTCTAGCTAAATTTTCTAAA 5428 24 100.0 37 ........................ AGACGCTGATGATAAGCTGTCTAAGAAGGTTTCAAGG 5489 24 100.0 38 ........................ CATCCATTTCCGGTACACGATCCCACGTTTGTGTAGTC 5551 24 100.0 40 ........................ ACATCGCAAGCGATCTATTGTTCAGTCTATTCCTGGCGGC 5615 24 100.0 38 ........................ AACTCCTTTGCAATCCTATATCTAGTGTAGCCGTCTAA 5677 24 100.0 37 ........................ CTGCTCCATCAAACGGCCCCGTGAGGGATACTATGAA 5738 24 100.0 40 ........................ AATTTGAACATAATTCGGCCTCGTCAGTTTTCCACAGATA 5802 24 100.0 39 ........................ TCCCTAACTTAGGTTGGGGTAAAGAAATAGAACATAGAT 5865 24 100.0 38 ........................ TTTACTGACAACGCCATCATACTTACTAGCCCAACTAA 5927 24 100.0 40 ........................ GTCCATTCTCCATTTATCTCAACCTTATCACAAATTTGGA 5991 24 100.0 41 ........................ TCAGTTCTAGAAAGAATTATTAGCATTAGATCTTCTAGACT 6056 24 100.0 37 ........................ CTCTCTATCCCAGATGGAATTCCAAAGGATCAAGCAG 6117 24 100.0 39 ........................ ATCTGAATTTCCTCAGCTTCCATTGCATAATTTATTCTA 6180 24 100.0 40 ........................ TATTTACCTTAATATTATGTATAATAGATAAGAGCTCCCT 6244 24 100.0 38 ........................ ACTATGGACCTACTACAGGGCCTATCTGACTTTCTGTC 6306 24 100.0 38 ........................ TTATTGTCAGAAAAAGAAATTATACTCCGATTAATAGC 6368 24 100.0 40 ........................ GTCAAAATTGCCCAACCGAACGTTAGCAAAAATGCAGCAC 6432 24 100.0 41 ........................ TCCCTTTCAGATTTGCAATATGTTAGAGCGAGCTTCGCAAA 6497 24 100.0 39 ........................ GCTGAATTGTAAAATTACGTTTATTACTTTCAGTCAACC 6560 24 100.0 39 ........................ GTTTTATTTATAAACGGCGGGTCTAGATAAAATACAGTT 6623 24 100.0 40 ........................ TCACTCTTTCAGTCATCATTCTCTTTGCTGAGATTGCTCT 6687 24 100.0 35 ........................ GCGAAAACAATAGCAGGCGAAATAGAAGATAAAAT 6746 24 100.0 39 ........................ GCAATAGACAATATAAGGAAGAGCTTACCACCTAGAGGC 6809 24 100.0 36 ........................ CCTAGAGGCGTAGCGGGCTCACAAGAAAACATTAAT 6869 24 100.0 38 ........................ AATGCCTGAAGCAATAACGCCCAAGTTACATGCTCTTG 6931 24 100.0 38 ........................ ATCCCGCTACGGCAATCCCTACGAATAGATCGGCATTA 6993 24 100.0 38 ........................ GTGTATAAGCACATTAGTAGGATTAGGCACGGTACAAG 7055 24 100.0 41 ........................ AATCACGAAAGCGATACTAAGGGCAATACAATACAAACATG 7120 24 100.0 39 ........................ CTTATTTTGGTGTCAATAATCTGTATGTTGCCGTATTGC 7183 24 100.0 40 ........................ AGATTGTTTTATTAATACCAAGTAGACAATTATATATTTT 7247 24 100.0 39 ........................ CCAAAACATGTCACATGTGCCGATATTGATATTTACAAA 7310 24 100.0 38 ........................ AAATCTACCGATCAACGGACGAGGGGGAACGCTAAGAA 7372 24 100.0 44 ........................ GGGAGTTCCCATTCGATTTTGGGAACCCTCAAGCACAGTCTGTG 7440 24 100.0 41 ........................ TTGTGCGCCTAGAGTTGCTACGCCTTGTTTCCACACCTCAT 7505 24 100.0 38 ........................ CTAACTTGTTAAAGTTCTGTTGTAGCTCGTTAAGTTGT 7567 24 100.0 36 ........................ GTTCCAGCTAAGATGTTCTTTCCTGCAGTCTTTGTT 7627 24 100.0 39 ........................ AACTAAGCCTTCACTAGGTGAGATAAAGAGCATAGCTAT 7690 24 100.0 38 ........................ ATCCGTTCTCCGTCCCGATCCGTACCGTTCTCTGTACT 7752 24 100.0 37 ........................ AGCATAACTTCATCTTCTTCTACAACTTCGACAGCTT 7813 24 100.0 42 ........................ TTAATTTATTGTCATCAAATCTATTTAGATACGCTAGTATTA 7879 24 100.0 39 ........................ ATATTTCTTCGAATGGGTTTTCTGTATCACCTTCTTCAT 7942 24 100.0 40 ........................ CATTTGTTATCAACTGTCCGGGTCCAGCGCTAGATGCGGT 8006 24 100.0 37 ........................ CAAAGTCAGAGCTGGACTATCGTAGACATCTATAATA 8067 24 100.0 38 ........................ ACGTAGCCTAGACTTGCTATAACTCCGTTGTATTGCCC 8129 24 100.0 39 ........................ ATACCAACAGCAACAACAAACTTATTCTTCGCTCATACA 8192 24 100.0 40 ........................ ACGAACACACCCCTTAAAACTCTTTTTCCAACATTCACCT 8256 24 100.0 40 ........................ CAAAGTCAGAGCTGGACTATCGTAGACATCTATAATAGAG 8320 24 100.0 39 ........................ TCTTAGCGAACTTGCAAAATATTCCGACCAAAGCTAATA 8383 24 100.0 40 ........................ TCAGGTGAGGAAGATGGTCTCCAAAACTACTGTTATTGGT 8447 24 100.0 43 ........................ GAGAGCTACAAACACGCTACCTAATAAAATTTCCAGATTGTAG 8514 24 100.0 37 ........................ ATACAGATTTCGTTATCCATATCCTACATGACTTTCC 8575 24 100.0 39 ........................ ATACATCGATCTTGTAATTAGATATCCATTGACTGTTAT 8638 24 100.0 40 ........................ ATGGAATAGGCTCTCAACAGCAGTATAATTGGCAAGTATT 8702 24 100.0 40 ........................ TCTACTCTTATAATTCCGTTACTTATCTTAACAGAGAACG 8766 24 100.0 38 ........................ CGTTTCTATTGCAAGGTCTGAGATTTTTGGCCTGAGTA 8828 24 100.0 40 ........................ GTATTGAAACGCTTAAGGTCAGCTCTAATTCTGTACGGAT 8892 24 100.0 44 ........................ ATGTTACTAAGTAAGTTTAATAATATATTATAAAATGCCATATA 8960 24 100.0 38 ........................ CTAAGCAGTGACTCACAGTTTAGACATTCACAAGTATC 9022 24 100.0 41 ........................ TTCTAAGCGTGTAAAGATCTATCTGACAACACGAAACTATG 9087 24 100.0 40 ........................ TTGAATATTGTACAAAGGAACGTTTAACCCTATAATAGAC 9151 24 100.0 37 ........................ CAATCCCATTCGTTTTACTCACTTCTAAGAACCTCGC 9212 24 100.0 40 ........................ AGTCTCTGCATCATGATCCCTGCCCCAGCTAAGACGTTCT 9276 24 100.0 40 ........................ ACGATTTTCGGTGTGAATAATGTAAATTTGCAAGTATCTG 9340 24 100.0 39 ........................ GTCTTTATGGCCCTCTGGGTCTTTCCACCATTGAGAGGA 9403 24 100.0 40 ........................ TTATCCTCATTCTATCGGTGAGTGGAACAAATTGGGTAGC 9467 24 100.0 40 ........................ ATCGTTATGCTGTAAACTTCCCCGGTTCTCAATCCCGTTT 9531 24 100.0 40 ........................ AGTTAACAATACTTTATTGTCAAAGAAGCAAGGATATGCG 9595 24 100.0 41 ........................ TTCAAACTAGATCTAGAAGATTTCTATCGGCATCTTTACAT 9660 24 100.0 40 ........................ ACGATATGAAAGTTGCCAGAGCCTTAAACAGAATTGGTTC 9724 24 100.0 39 ........................ GCTTCTTGTCCCTGAACTCCTTCTTGAAATGGATTTATT 9787 24 100.0 37 ........................ TTTCGTATAAGGACCAGAACGGCAATACCCAAACTGT 9848 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 95 24 100.0 39 GATAATCTCTTATAGAATTGAAAG # Left flank : GCTTTATCGGAGGCATATAATAGTTCCACCCCCGAAGCTCCTCCTCAATAGGGTCTGAGGCCCTATATGAGTGGAGTCTTCGTAGCTGTCTAACTATCTGCGACCTCACAATATAATAGCAGTTGAAAAATCTAAAAACCGTTTTAAGGAGGGGGGTAAAAGAATTCCCGAATTTACTAGGGATTAACCTAGAATTAAGAAGATCATCTCTATATAAAGATTAATAATTAAACTAGGGAAAAAACTTACTTCATCGTTAAGAGAATAGTCTAGTAATTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGGGGTCGTTTGATGTTAGTTTCTTAGGAGGTAGGGCGTTATCCTCAAATCATTACCTCCATGAAGAATACCTTATCCTCCCGGGCTTAGTAGGGATTGAAAAAACTATAAAAAAATTGAAAACACAAACCAGAGAAAAGCTTATAAATAACTAAGGAGAAAATAAGAAATAGTAAGAGATTAATAAACCCTCA # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTCTTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 210-4891 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACUK01000127.1 Saccharolobus solfataricus 98/2 contig127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================================================================================== ================== 210 24 100.0 43 ........................ AATAAACCCATTCTTCTTCGCCCGTTAGTATTCTAACACTGCC 277 24 100.0 41 ........................ ACAGGGATGCGGGTTTAACGCCCCCAGAATGGATTGACCTT 342 24 100.0 39 ........................ ATTCTAATAAATCAATTAAAGTTAAGACAAAAAACGTGG 405 24 100.0 39 ........................ ATTCATATTGGAAATGGAGTTGAAATGTGCATAAATGAT 468 24 100.0 41 ........................ GTACCATCTATAATCTCAATTTACCGCAGAAATAAGATTAC 533 24 100.0 43 ........................ ATTTCGAAAAATGCAAAAATAAAAAAATTATTGACAAAAATAG 600 24 100.0 43 ........................ CTACACCGATTCCGATACCCATTATAACGCCGATAACTAACAT 667 24 100.0 40 ........................ TCCTTTCGTTGTCTGCTTTTCTGTTACTATACACCAATCT 731 24 100.0 40 ........................ ACGGAGCAAGCGTCACCGAGACACCTCGGTTAAAGCGAGG 795 24 100.0 44 ........................ ATATAAACTATATAATTACTAAGATTTTGTAAAATTATTCTTAC 863 24 100.0 37 ........................ CAAAGGTGAGCTGAATGGCTAAGAAGACAGAAGTAGA 924 24 100.0 41 ........................ GGACGGCCTCTTAGAAATACTACTGCTTCACCGACAGACAA 989 24 100.0 41 ........................ CCAAATAATAATTGGAGCGGTGCAAAAAATTCAAAATTCCA 1054 24 100.0 39 ........................ AAATACTGAACGGTGGAATAAGTGTCACTGACCCCCATA 1117 24 100.0 44 ........................ TATGGCAAATAGGACAGATCTTAGTATGCTCAGCGTAACGGATG 1185 24 100.0 39 ........................ TGTACTCCACCATCTTCTGCAGCTTCCTGAAGGGTAAGG 1248 24 100.0 43 ........................ ACAGTATTGGACGCCGTAACGAATATTATCACCGGTTCACCAA 1315 24 100.0 39 ........................ TATTCATAATTTATTATATTTATTCGTTTCGTTATTTGT 1378 24 100.0 40 ........................ CTTTTCGTTAGCGTGGGGATTCGAAATGTTTATTAACTCT 1442 24 100.0 39 ........................ CTTCAAACGCTACCTCGACAGTCCTACAGCCTACAGCAC 1505 24 100.0 45 ........................ TAAATTTAACTTCATATATTCAAGGTTTTACGATTTTGGAGGGCT 1574 24 100.0 42 ........................ AATTTCATTGTACTATCACCTCATCCTTATTTATCATTATTT 1640 24 100.0 41 ........................ TGATTGAATGATGTTAGGAGTAAAAATAGATGTTCCGTTCA 1705 24 100.0 40 ........................ AGTTTTTCATCTAAAAGTTTTAGTCCATTTTCAACATCAT 1769 24 100.0 44 ........................ AAAACTTGGACAAGTTTCTCACACTGTTCATCACTGATTATTCT 1837 24 100.0 42 ........................ ACTTCACTTACTGCATACTCATGTTCAGTGTTATAATCGTCA 1903 24 100.0 39 ........................ GCAATTCCGTTAGGAGTTATAATTTTACTTGTTAGTTTA 1966 24 100.0 42 ........................ ATTATGATATTTAAAATTCTTTCTGTGTCACGGGGATTATAA 2032 24 100.0 40 ........................ TATTAAAAGAATGATGAATAAGTTATAATTCTTTTTTTAT 2096 24 100.0 40 ........................ TAGGTTTTGTGAAAGTGACAAATGCCCATGGAAGGGACAA 2160 24 100.0 39 ........................ TTTTCCTCCATCTTTATCATTCTTCCTCGCCCTCCTGCA 2223 24 100.0 37 ........................ ACAACGCGATGTAGAGCGTTAGGAAAGCAACAGTGTA 2284 24 100.0 43 ........................ ATGAACTGTTTTGCAATGAACGTGTATGAGAGTTTGTACAAGA 2351 24 100.0 44 ........................ ATTGGTACATTCTCTATATATAACATATGATCTATTGTATACAT 2419 24 100.0 40 ........................ AATTGGCGAAATTGTTGTATTCTGAAAAGTCATAGTTAAA 2483 24 100.0 43 ........................ GCAATGATATCCCCGACCCACCTGTTGCAATTGCTGGATATCC 2550 24 100.0 40 ........................ GTCTTGCGCTAGGTGATGGTACTATATGTATATCATTTTG 2614 24 100.0 46 ........................ CATCGACACTGTCAGTAACACCTGACCAAGGCTACCAGTTACAGTT 2684 24 100.0 42 ........................ TGTGTAGAATCATAGTTATAATATAGTGCTAATTTATCGTTT 2750 24 100.0 41 ........................ TGAATTGTTGGAGGTGATAAATACAAACCTAGTTTATTTAT 2815 24 100.0 37 ........................ TCAGAAGTCAGAGACACATCTCAAAGAGGCTCATAAG 2876 24 100.0 38 ........................ ATGCAAAAATTTAAGCTTTTTGCCAACTTTTAACCGTA 2938 24 100.0 41 ........................ ATAACCGTGATCAAATACAGTGCAACACATAGCATCGTCGT 3003 24 100.0 38 ........................ GTTGGTAAAGGAAGTTTTGTGTCGAAAAGCCAGATACT 3065 24 100.0 43 ........................ TCACGATAATGTTACATTCGTGATCGTACGTATAGCCCCTCCT 3132 24 100.0 41 ........................ TACTGCTATTATGATAACAAAGTTTTACCTAGTCTTTACAA 3197 24 100.0 39 ........................ ATTATTACACCGACTATAAGCAAAGCTATTGCTATTGTT 3260 24 100.0 38 ........................ AACGTATTAGAACAACTGGTTCTATATCACGTGTTCAA 3322 24 100.0 42 ........................ ATTCTATTCCATAATCAACATACTTATTACATGTGTAGTAAA 3388 24 100.0 40 ........................ TAATCTCATCCAATTATATGCGGTTTGCCATTGATAATTA 3452 24 100.0 39 ........................ CTTTAGACACGGGATTAATCCCTACACGACGAACCTCAT 3515 24 100.0 40 ........................ TTTTCTGCGGGATCTGTAAACCTTAAAAAGTCGGGGTCTT 3579 24 100.0 40 ........................ TTTAATTGGTGGTCTAAAATGTTAACTTTTTCTGTTTCAT 3643 24 100.0 39 ........................ ATTAGAACCTTCCAAATGTCCTTTACTAAGTCTGGGAAA 3706 24 100.0 40 ........................ AGCTCTCCAACTAACTTACCCTCCAGCACCGGCGTAACAG 3770 24 100.0 41 ........................ GAGAGAAAGGAACGAAGTGATGATATCTAATTAAATCTCCA 3835 24 100.0 42 ........................ TACCTTCTTCAATGCCTTCCAATGCCTCTTTCCTCATTCTTT 3901 24 100.0 40 ........................ CTAACTCTCTTCTGAATTCTTCATTTGTTTCGCATGCTAA 3965 24 100.0 39 ........................ TTATTTCTTGCAAAGTTCTTGAAATCATAAAGTGTTAGA 4028 24 100.0 41 ........................ ATATACATATCTTCACTCTCCTTTATAAACTTTTCTCTATC 4093 24 100.0 42 ........................ TTAAAATTTCAATTTTTTTACTTTCTTCAATTTGTTTTCCAG 4159 24 100.0 40 ........................ ATGACGTCCAACATATCGTTGCCGTTCATCGCCCCACCAA 4223 24 100.0 38 ........................ GCTTTATCATTTTATCAATTCACTCCATTTAAAAATCC 4285 24 100.0 40 ........................ ATAAGAATTCCAGTTTCTGGAACTGGAAAACAACCGCTTT 4349 24 100.0 43 ........................ AGAATACTTGTTACCTAACTGGTTGAGCAAAAACTTTAAATAT 4416 24 100.0 106 ........................ CCCGCACTTCTATAGAGTTGTAGCTTTTTTACCCCATGTTTATATTCTCAAACAGCTGTTTAAAACCCGCACTTCTATAGAGTTGTAGCAAGGGGCTTACTAACAG 4546 24 100.0 40 ........................ GACCAGAAGGAGGGTTCTATAAGTACCCGAGGATATTAGG 4610 24 100.0 38 ........................ TTCCAGGTTCAGATATTACAAATGAAAAAGGACGTGTT 4672 24 100.0 41 ........................ TATTTGGAGATGCAACACTTTCAGATAGTAGTACTGTGCCG 4737 24 100.0 44 ........................ GTTACACCTAATAGCACATATAGCGTTGGGAAGAAGCTGAAGAA 4805 24 100.0 39 ........................ CTGCTTTTTAGACTTCTTTTTGTCTCCATTAGCCTTTCC 4868 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================================================================================== ================== 72 24 100.0 42 GCTAATCTACTATAGAATTGAAAG # Left flank : CTTTCCTTGAATCATAGTTGTCGTGCTCACTATCTCACCCCTATCAATACCCATCTGTACAATCCTTTGAACATCATATAGAACCTTAGTCACAGCCTCTTTGGATAAGGCATTAGCAAACCTATCCACTAGTGTTGGAGACTCGCTATAGAGGAAGCCCACAGCCAACAAGTTGGCTACCCTCACTATGATACCCTCCTTCTCTTCTTG # Right flank : ATGTATCCATATTCAATAATGCATTAACTCCAAGTG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 39-1955 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACUK01000047.1 Saccharolobus solfataricus 98/2 contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 39 24 100.0 41 ........................ ATCGCTGATCCAGAACCACGTGGCGAATACAGGAAGAACTA 104 24 100.0 39 ........................ ATCAAAAGTCCGCTATGGTCTAACGGTGTAAATAATTCT 167 24 100.0 37 ........................ AATTGGATCCCTACGGTTGACGGATCACCGAAAGTGT 228 24 100.0 39 ........................ ATCATATTTTGAATTCTCTTATACAGAAATCTTTGATAT 291 24 100.0 41 ........................ ATAGCTATATATGGAAATGTTCCAGACGCGGAATATGTTGC 356 24 100.0 39 ........................ AAGCCTACACAGGATAGGATACTCAAATTATATGAAAAT 419 24 100.0 42 ........................ TTTGCGCATTTACTTTTGTATGAGCTAGGCTATTTACATCAT 485 24 100.0 37 ........................ CTGAAATATCCTTCAAATTGATTTGCCAATAAATTAA 546 24 100.0 37 ........................ TGTTCTGTCGTTACTGTCGTAAAGCACGTCCTATTAT 607 24 100.0 38 ........................ ACAGTGCAGAAGTCTAATCCAAATTATTCTACTTTAGC 669 24 100.0 39 ........................ TCCTTGGAGATGTTGATGTTTTATACGGTATTATGTGAA 732 24 100.0 38 ........................ GCACAATTCGCCAACGATTTCGGTTCGCTTTATACCTT 794 24 100.0 41 ........................ CAAATTTCGGCGAAAATTGTACCGAATTTCGGCATTGCTGG 859 24 100.0 40 ........................ AAGATCATGGTATTGATATTCAAAAACATTATTCAGAGTG 923 24 100.0 42 ........................ ATTAGAAAAGTTTAAGATTACGCATGCAAATATGTTTTTGAT 989 24 100.0 39 ........................ TTCTGTTTCGAAGAAAACCCGCCTCAGATTCATTATGGG 1052 24 100.0 39 ........................ AAATCAAACGGAAACTCCCCGGATATTATCATGTCTAAA 1115 24 100.0 37 ........................ CCTCATCGTAAACATGCAATCTTGCATATTCAGTGTA 1176 24 100.0 39 ........................ GCGATATATGTTATAAGAGGAGAAGGGACTTTACCCCCT 1239 24 100.0 41 ........................ ATATACATCGCCGGTTTTATAGCAACTGCACAGCAACAAAT 1304 24 100.0 38 ........................ GAAGTTGCAAAAATTGCCAATGTTTTTTTCAAACGCGT 1366 24 95.8 39 T....................... ATTTATGATGAAAATAGGAAATTTTTCAGAAGAATTATA 1429 24 100.0 37 ........................ AAAAGTTTAAATACCCGAAGCCACAAAGGTAAAAATA 1490 24 100.0 40 ........................ CGTTCTAGAGCTAAACGATGCATACGCGGTGGTACAACTA 1554 24 100.0 41 ........................ ATTCGGGGAAAACTTATGCATTATAAGAAGAAGAGATATTT 1619 24 100.0 40 ........................ TCAAATAAGGAACAACTCTGGGTAAGCCCACAATACGCAA 1683 24 100.0 38 ........................ CTTAGCGTCTCAACCTGAACCAAACTTCCTAGATCAAC 1745 24 100.0 38 ........................ TAAACTAGATCCTTATATTTCACGTAAATGTAAAGGGG 1807 24 100.0 38 ........................ TAAGGAGTAAGCTAGCACTAGCAATAGCGGTTGCAATA 1869 24 100.0 39 ........................ GTTCATCAGTTCTACCTTTTGGTCCAAAGGCTGATCCAA 1932 24 95.8 0 ..G..................... | ========== ====== ====== ====== ======================== ========================================== ================== 31 24 99.7 39 GATAATCTCTTATAGAATTGAAAG # Left flank : ATCTAGCGTTGTCTCTGCCGTTATATATTTGAAAGTGTG # Right flank : GATCTTGATGATATTCAATGAAGTCCATTAGTACTTCCCCCCAAGGAGGTTGGAGAGAGGGAGAAAAAGAGTCGTTTGAGAGGTTGATAAATAGGATTATGAGGTTGGGAAGGGTTAGAGGGATGAGAGTGATTTTTGCAACGTATAAACCCCAAGATTTAAATGATTTAATGTTAACGTTAACTAACTTAAAGATTGCATTGAGGGTTAAAGAAGACGCTTTAGATAGGATTAACATGAAGGAATAAGCTAAGTTGTTGCAAGCTTCACCACCAGGGTATGGAGCGTTGAGGACTTTCTCGTTAAAGGTGAGAGATCTGATATTCAGAAATGAGAAGTATCAAGATTCATGAAGATTAGATAGATCTTAGTAGTGTTTAGAAGGTAGTATTATTTCTAGTTAAAGTGCCAAGCACTGCCTTAGGTGTAAAATCCCTTCCATCATAGGTCCACACGCTATTTAAACTGTAAGCGTATTCTAAAAACCTCCTTAACAAATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTCTTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 2373-2785 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACUK01000010.1 Saccharolobus solfataricus 98/2 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 2373 24 100.0 39 ........................ ATACTGCAAGCGAATTGGCGGAAAATTGGCAGCGACGTG 2436 24 100.0 42 ........................ TTATCTAATTTTAATAATCAAGGAAATTCATTAACTCAAATA 2502 24 100.0 39 ........................ CCCATTCATCTCTTTCTTTGCAGCTTTGTTCTAACATTA 2565 24 100.0 41 ........................ TGGTAAATAGCTCTGTTAGGCCCAGTTATTCCATATTCTGA 2630 24 100.0 44 ........................ ATTTTCTAATATATCTAATTCACTCTGCGTATCATTATGGATAA 2698 24 100.0 40 ........................ CCCGCCCAGCCAGACTGTTTTCAGCCCAAACCGGCTAATT 2762 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 7 24 100.0 41 GATAATCTACTATAGAATTGAAAG # Left flank : TCCATCATATGTATACATATTTAATAAAAAATTAAAGAAAAATTATAATATTCCACACTTTTTATAATGAATTCCACGTTAGACTGAAAATTGCTATAATTTATTAAGATTAAATTAATAAAATTATTATTTATATTGAAAATTCATATAAGATATTTTATATTTACTAAAAGATTTTTATCATTTGTATTTTCTTATGCTAAAACTATCCCTTTAAAATCCAGTAAAAATACGATTATTAAGAATAGACGAAAATCTTGTAAATGATTACATTTCTCTTAAAGAAAATATAGGGAAAGAGTTCCCCCGTATACAATCGTTGTTTTCCTTATTCGCTAATTCGTTTTGGGCTAGGTTGTTATCCTAAATTCATTATCTTTATGAAGAATTCGTTAAAATCCCGGGAAAACCCGGGAATAGTAAAAAAGAGAACAAAAATAATAATAATACTAATGAAAGAAGGGAGAAGAAAAGATAAAATAGAGGGTTTAAAATCCTAA # Right flank : GAAATTTATCAAGTCGAAGATTGCACTAGAGTCAAAAGGTATCATTTCTTTCTTTCCTTCATTTCTTTAACTCTCCGACTACTTCATCAGTATTGATTTTTACTATCTCTTTAGATGCTAAATCCAATAATCTTCTTGCTTGCTCTTCTTCCTTCTTTCTAACTTCTTCTTCCAAATCCTTTCTTAAAACCTCACTTACATTAATCTTATATTCTTTTGCTTTTTCTAACATTTCTCTCCTAACCTTTGTCGAGGCAGCAACCCGTTCGCCTATAATGACCTTCTTGAATTATAAGGTAATAAATATTCTGTAGTAGAATGTTTTCTACCTTATGCTTTCTAGGCTTAAAATTTAAATTCTTTAGGATGATAGATATTAATTGTGGAATGATTTCGAGGCTTAGACTAACCATAAAAGAAACCTCATAATCTTTGTACATAACGTTTGTTAAACTGTATTTAGCCTTTACATTTCTAGGTTTTTCTGCATGAGTATCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 11436-4104 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACUK01000096.1 Saccharolobus solfataricus 98/2 contig96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 11435 25 100.0 38 ......................... ATTTTAGCAATGCAATAGATCAACAATTGAAAGAAACT 11372 25 100.0 39 ......................... ATTTTCATCTCTTGGATTGAAAATAAATGAATTTTCTTC 11308 25 100.0 41 ......................... TGTTTCACAAATTTCAAACTTGCAAACGCAACAATTAAATA 11242 25 100.0 40 ......................... GTTTTTGGTCAAATATTTGGACAACACTTACAAGAATTGG 11177 25 100.0 38 ......................... TAGTCAACGACAAAGTGCTTAAAACCCGTGTTATACTC 11114 25 100.0 39 ......................... GCTGTAATAGTCGCAATAGCAAAAGCCGAAACAATGAGT 11050 25 100.0 41 ......................... CAATAGAATTTTTCTTAGTTGGCATTGACAAGTATAATTCT 10984 25 100.0 40 ......................... CAAAATTCCAAACTTTGGGAATTTCTAGTTTCCAAATTTC 10919 25 100.0 39 ......................... TTTAAACGCCTTGCAATGGTAGAAACATCAGTAGAAGAC 10855 25 100.0 41 ......................... CGCTTTCGACTGCGACAACTGTCGTTTGGCTCATTTGTTGC 10789 25 100.0 38 ......................... TTATTTCAAATACTATTATCTCCGCCATATGTTTACAT 10726 25 100.0 38 ......................... ATTATCTGCAATTTTAGCAACTGAGAGGGCAATAATTT 10663 25 100.0 40 ......................... TTTTTTCTTTAAAAGCTCTAGGCAGTTCATTTCTATTTCA 10598 25 100.0 39 ......................... CATGCCAAATTTGTAATCCCTAGCTTGCTGAACAAAATA 10534 25 100.0 44 ......................... AGTACTGATAATCTGAAGGTATTGGACTAGAACCCATGAAGTTC 10465 25 100.0 37 ......................... GCTTTAACTTGGTACGCACTTTACGCCATGATAAACG 10403 25 100.0 39 ......................... GAATTTTGTGTTACTGCAACGCCAAGATTTTCAAATGTT 10339 25 100.0 36 ......................... GTTGAATTTTTGCAACTGGTATGTTGTATTTTTGCA 10278 25 100.0 42 ......................... AATTTGTTACACGGCTAGGATTTTTTTTCCTAGATGTACAAT 10211 25 100.0 38 ......................... TTCTAATCTTTTGCCCATTACTGCATCATATCTACTAG 10148 25 100.0 38 ......................... ATCTTTACCTTTATATAAATCTTGTTCGTAACAAATAA 10085 25 100.0 37 ......................... ACAAAACGAGGAGTTTATAGTAAAATCAACTATGAAA 10023 25 100.0 35 ......................... ATTATTTGAAGAGAGGGTGAGAGAAGCATGAAAAG 9963 25 100.0 36 ......................... AACTACAACGAGGTGAGAAACGATGACTAAACGTTT 9902 25 100.0 38 ......................... TTTAACCAGCATAACAGCATCTAAAAGAATGGGAATTG 9839 25 100.0 36 ......................... TAGATATATGGCGATGAATTGCATTAGTCAGTGGTG 9778 25 100.0 39 ......................... ATTTTTAACGCTATGACGCTAGCCCTCATGTTAGCTTTT 9714 25 100.0 37 ......................... AAAGTTTGTTCTTCTGTTTCGTTTTGTTGTTCTGACT 9652 25 100.0 38 ......................... CCCCTTTTGCCGTCTTTTTAGTTACCACAATGCACCAA 9589 25 100.0 39 ......................... CCGTATCCAGAAATAATTAACCAATCGCTTGTTTGTGAC 9525 25 100.0 37 ......................... AAATTAACGTAAAGAGGGAATTTCTCGCACCTATCAA 9463 25 100.0 42 ......................... GAATAAACATTGGTACTGTACTTTGTAGTACTGCATACGGTG 9396 25 100.0 39 ......................... GCATCTGTCGGCAACCTCACTTATTCACGTGGGGGTGCG 9332 25 100.0 37 ......................... TCTCTCAGAAACTCCCAACAAATTTGCTATTTGTTGA 9270 25 100.0 39 ......................... TGCAATTTGTTGAATTGAATAACCTTTTCTAATTAGTTG 9206 25 100.0 42 ......................... TTGAACTTGTAGAAATTGTTCATATGAAACAGCATAATTTTC 9139 25 100.0 40 ......................... TTTACAGTTAATGGAATTCCTTTTTGTGCATACAATAACG 9074 25 100.0 36 ......................... CTCATTATTTCATCATAAAGATTATCCACTGCAATT 9013 25 100.0 39 ......................... ATGCATTCCACCTCTGTTTCTTCCTCTTTACGCATTTCT 8949 25 100.0 36 ......................... CTCTATATTCTACTATCCTCCCTCTCTGCTCTGGCG 8888 25 100.0 39 ......................... ATCTCTGATTTCTCAGTTCTCTAATTCCGAATACTACAT 8824 25 100.0 41 ......................... TAAAACTGCTCAAAAATGCTAGAATTATAATTATGGCTATG 8758 25 100.0 41 ......................... ATTTTGAATGTTACGACTCTCGTCATTTTTCCACCTCTTCT 8692 25 100.0 36 ......................... GGAGTAATCTTTCCAGTCAAAAGACTTTCAGCCCTC 8631 25 100.0 36 ......................... TTTATAAGCTTCAATAGAGCTTTATCTTGAGCAATC 8570 25 100.0 39 ......................... ATAAATGGTACGTCTTCAGGCGGAAAGCCTTCCATTTGT 8506 25 100.0 34 ......................... ATATTACCTTGCTGGATAAAGTTAATGATTTCAT 8447 25 100.0 38 ......................... ATCTTTAATAAATCCTCCTTTATTCTCATGTAATGCAT 8384 25 100.0 40 ......................... TTATATTACGATAAAAGTGCCAGATATGGTTGTTGGCATT 8319 25 100.0 40 ......................... CCCACCAGAAAAAAAGAAGGGTGGGGGGCAAGGGCCCCGG 8254 25 100.0 40 ......................... GCATATATTATTGGCTGAGGTAAGGTCGGCATATCTGTCG 8189 25 100.0 39 ......................... CCATCCAAGCCTTGATTTGATATTCCTTTTAATGTCTGC 8125 25 100.0 40 ......................... TTCATTATCCTCAATTTTTTCTATACCCTTGTTGTTCATT 8060 25 100.0 39 ......................... CCCCACTGGAATGCACCATTTCTTGCAAGTAATACATTT 7996 25 100.0 40 ......................... ATGCAGTTTGGCCTAAAGGAATATATACGTTAATGTCTGC 7931 25 100.0 38 ......................... CCATTATTCGGCACTGCATTTAATTGAAGCACTATACT 7868 25 100.0 39 ......................... AATATTTTGAATATTTGTACACCCATATGAAAAACGCAG 7804 25 100.0 37 ......................... TATCTCTTATTCGTAAGGGTTAAAACAAAATTATCTT 7742 25 100.0 35 ......................... TTTTTATTTAAGAACACTGATGGAAAGATCTATAG 7682 25 100.0 37 ......................... ACCCATATTGAAGAGTTTGAGCATAAAAATGATTCTA 7620 25 100.0 38 ......................... TGATTGCGTTACGTCACCATGGGGCTATTCGTTCTGAT 7557 25 100.0 39 ......................... TTAATGTGAAGAAAATTGTTAAACGCGTTTTGCGACATT 7493 25 100.0 40 ......................... CACTACATCTATTGTTTTTCCTTTTGTAAGACATTCCTCA 7428 25 100.0 40 ......................... CTGTTATTACGTCTCTAATTGCCACGGGCTTAAAAAGCGG 7363 25 100.0 39 ......................... ATCAATTTACGCCTTTTAGAAATCCAATTTCAATTATTC 7299 25 100.0 42 ......................... GAAGCAATAGCCAACCCACAAAGCTGACACTATTCATTCGTC 7232 25 100.0 38 ......................... GTATTCAAAAGAGAACTGGGGGATTCAAGGTAATACCT 7169 25 100.0 36 ......................... CTCCGTAAGGCCCCCATACAGTAAAGTAGCAGTTTT 7108 25 100.0 37 ......................... ATAGAAATATAAATCTCAGCAATTCTTGATATATTGT 7046 25 100.0 36 ......................... TCCGTTATCATGTTGACTGGAAATGCGTTTAATAGT 6985 25 100.0 39 ......................... ACCCACAGCACATTGCCATATCCACTAAAATTATACTGA 6921 25 100.0 38 ......................... ATAAATATGTTAACGAATGTTGTAAATTGGTATTCGTT 6858 25 100.0 38 ......................... AAAGGAATAATAAGCATGAACCGGGGAGTTCACGCTTT 6795 25 100.0 38 ......................... TCAAACTCATGAAGCTACTGTAATCCATTTCACATAAA 6732 25 100.0 38 ......................... ATCATTTCGTGAAATTTTCGCAACAAACGAAAAAAATT 6669 25 100.0 40 ......................... ATTATATTGATAAATTGATAAGAATGCCCGAAAATGATTT 6604 25 100.0 42 ......................... AAAAACTTTTCACATTCGACATTAAAAAATAAAATAATTTTG 6537 25 96.0 39 ...............A......... AATTCGTATACCTTAGTAGTATTATCATCAATATTGTAT 6473 25 100.0 39 ......................... TTCTCAATTGCCTTTCCCACGATAACCTCAATCCAGTAG 6409 25 100.0 37 ......................... TCTACGTTGTTAAATTCATATACAGCTTGGCTCATAT 6347 25 100.0 38 ......................... ACGTATTTAAATTTTTTGGTAGTACTTTCCTTGTGTAT 6284 25 100.0 41 ......................... AGTATACAACAATGCAATAAGTGTTGATAGCTTTGCATCTT 6218 25 100.0 40 ......................... CGCTTCTCCGTCTTTTCAGTTATAATGCGTAAAAGCTTAC 6153 25 100.0 37 ......................... CAGCAAGAAGTTCACTCTCTACATCTTATGATTTCGG 6091 25 100.0 36 ......................... CGTTTTCGTCTGGATTATTTATTATCTCTAAGCCCT 6030 25 100.0 36 ......................... ACCTTTATTTTAAGTCCTAGCCTCTTCCCTATCCAT 5969 25 100.0 38 ......................... TTGTTTCACCTCCTTATTAAAAGCGACAGACGGTCGAC 5906 25 100.0 37 ......................... TCATTTCACTGTGTAGAGGTTGAACACCTAATTTTTT 5844 25 100.0 40 ......................... CTTTGATTGTCCGCTCTCGTTCTTTTCCACACTGAAGATG 5779 25 100.0 38 ......................... AGCTTTATGACACTCATTATCATATACTCAAAATTATA 5716 25 100.0 40 ......................... TCGATTTTTTTCGAGGATGGATTTGTTTCATGAAAGAGCC 5651 25 100.0 39 ......................... CAGCTCGACGATGACGAATACAAGATGCTGTATAATGCG 5587 25 100.0 40 ......................... TTTCTCAACTGATCCACGGCTTCAGAGAAGATGTTTGGAT 5522 25 100.0 39 ......................... GAACGAACATGGTAAGCCCTGAGGACCTTGAAAACGATG 5458 25 100.0 40 ......................... CTCAGCAGATTTAAACTAACGATATTAATTGTACACACTG 5393 25 100.0 39 ......................... TTAAGTTGTTTTGCTCTATTTAAAACAAAAATAATCCAA 5329 25 100.0 39 ......................... CAAGTGCAATAGCAAACTACTACTAAATATAACATATAT 5265 25 100.0 38 ......................... CTATATGGGGTCAGGGTGGAACTAAAATCGTGGCTTTA 5202 25 100.0 39 ......................... CTTACTTAAGCCTAATATCTCCGCAACTTCATCAATAGT 5138 25 100.0 41 ......................... GAACTCTCTATTGCTGACGAACTAAGAGAAAATTGTTTCAA 5072 25 100.0 38 ......................... TCTAACAATGAATCTGTCATAAAGTGCCCGCAACTCTT 5009 25 100.0 36 ......................... AGATTATCAATCAAGTGATAGAGATATTGCAATTTT 4948 25 100.0 39 ......................... TGTTAGATACGGCAAGGCAAAGATTACAAACAAGGATGT 4884 25 100.0 39 ......................... AAAATGGTGCTTATCGCTATTAGGTAGTCGGCGTTGTTT 4820 25 100.0 36 ......................... ACTACTCTTACTTTTTGCATTCCTTTTGGAGTAGGC 4759 25 100.0 39 ......................... TATTTACGTGCATAAAGAACATACCTCCAGCGCCTCCTC 4695 25 100.0 37 ......................... TCGTAAACTTGAAACTGACCCGTATATCCGAATTTAC 4633 25 100.0 39 ......................... GTATTATTCTCATAATAGGAACCGCCCTAGTGTATGCTA 4569 25 100.0 37 ......................... CGTGATTACATGGAACATTACTTTTCCACCGAATATT 4507 25 100.0 39 ......................... TTTATGTTTTCGAGTTCTTCTGGTCTTAACATCACTCTA 4443 25 100.0 36 ......................... GTCAGTTATACGCTACATATGAAAAGATAAATGAAG 4382 25 100.0 38 ......................... ATCTCTCTTAGTTTTGTCAAAGCTTCTGACCCGCTCCT 4319 25 100.0 40 ......................... TCTATCTTTATTGTTACAACTTTTGCATACGACATAATTT 4254 25 100.0 39 ......................... TCCTCTATCATCTCCTTTAAGCACTGTGTAATCTCACTT 4190 25 100.0 37 ......................... TAATACTGCAGTAACGGTACAAGTCATTGACAGCGCT 4128 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================ ================== 116 25 100.0 39 GATTAATCCCAAAAGGAATTGAAAG # Left flank : GTCACATCCCTCACAATCCATAATGAAAATGTCGGCA # Right flank : ATATGGTATTCAGTAAATTCATGCTATAGTCAATTTCTTAGTAAGTGCGAAGAGAAATAGCTTTTGTCTATACAAAGAATACCAGTTAAATCCCTTAACCCACTTATTTCCAACATTCCCCATTTAATAGCCCTTTTTATTTCTTTGCAATTATTACGAAAAAGACTATATTTGCAAGTGCTCAAATGTTTCACGTCAAGAATCCGCAACTAACCCGTTCCCTAAGAACTAAGTATATTTTACACTTCTTTAAACTAATGGCTTACCATTGTTTGATGATGTGCATATCAAGTTATGATAAATCTTATAATGAGAATTCCAGCAAATTAAAAGAAGGCATTACATGCCTCGCCTCTAACAGACCTGAGTTCGCAACTGTAGGAAGGAATTTTGAGGGAAGTGAGGATATGGAAACAATATGTTTCCTTTTTGGCTACGTTACGATGAGAGTTACTTGAGATAAAAGAGTTATTAGTTTGCATTGTCTATCTATATAATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCCAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13590-9192 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACUK01000006.1 Saccharolobus solfataricus 98/2 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 13589 25 96.0 38 .........C............... TAATATTCTTCCACTGAATCATCTTTAAACAAAAAATT 13526 25 96.0 37 .........C............... TTTGCTAATGATTCACCTTCAATTTTCACCATATTAT 13464 25 96.0 38 .........C............... GTACTTATGTGTTGATGCAAACTCTGCGAATAGATCTA 13401 25 96.0 36 .........C............... ATCTTAGAGAATTCTGGAGTACCTTCATAATGTGGT 13340 25 96.0 40 .........C............... GGAATGAGTTTAGATAGCTCTTCATCTATTTTCAAATCAT 13275 25 96.0 36 .........C............... ATGCTAACAATGCTCCGATAATACCTCCAACTCCTG 13214 25 96.0 40 .........C............... TACATTATTGTTAGTCGGTACAGCATTTATTTGGACAACA 13149 25 96.0 41 .........C............... TATTATCCATATTTTCATTATACATTGCACTCAGAATTTTT 13083 25 96.0 38 .........C............... AAGTCTCCCTCAATGAAAAACTGCGCACAAATTGAGTA 13020 25 96.0 38 .........C............... CATTTCTTCCTCATTTAGTTCGTCTTTTTCCTGTAATT 12957 25 96.0 38 .........C............... TGTGACACCTAAGAGTACGTACAGCGTTGGGAAGAAGC 12894 25 96.0 35 .........C............... ATAATTATTCAAGATGCGATATTGTTTCAAATTTT 12834 25 96.0 34 .........C............... CTCTAAATGGAATTTGAGAATTTAATATTTTATC 12775 25 96.0 37 .........C............... AAACAACGCAGCAAAAACGAAGAAGATAACGACATAA 12713 25 96.0 37 .........C............... GCAAGGGGTAGACCCGCGACCTGTGGGGCACGCACCC 12651 25 96.0 39 .........C............... ATGTGTCCGTTCGGTGCGATGTATATTTGTACGTCTTTT 12587 25 96.0 36 .........C............... GCGTTTCTCTCAGTGGAACTCAAGGGCAGACAATTA 12526 25 96.0 39 .........C............... CCCGAATCCATTAGGTGTAGTTGGAACGAAATATATTAT 12462 25 96.0 43 .........C............... TTAACCAAAATACACGTTTACCCAGATGGCACGCTGGCTAATT 12394 25 96.0 36 .........C............... TTGATAGTCACAGCACCTGGGTCTCCATGATATAAT 12333 25 96.0 39 .........C............... GTTCTAGGCCCTCCACTTTTCACGAGAAAATAAATATCA 12269 25 96.0 40 .........C............... AATAAACTCTTTGCTTTGAACGGCCACTTTGTGGATTTAT 12204 25 96.0 38 .........C............... ACATAGAAGATGTTAGCCTTTGAAATGGTTTAGCTAAT 12141 25 100.0 40 ......................... AATGATATTGCATGGTTCAATAACTATAGAGAAACGGCGT 12076 25 100.0 40 ......................... CTTTGTGTAAGTGATCGCTTGTACTCGCAATCTTAGCTTG 12011 25 100.0 39 ......................... TTACTTCTGATGGCATCCTCAAATCTCGCAATTAGTGCT 11947 25 100.0 34 ......................... ATAAATACTTAAAGACAATATACAGACCATTACC 11888 25 100.0 41 ......................... AGAACCACACTATATCACTAGCCGAACCGGCAATATTAACA 11822 25 100.0 39 ......................... GAACATTTCCATGATTTTATCACTAAACTCTTCCAAGTT 11758 25 100.0 36 ......................... AATCCAACTGTAGCTAGCACGATTCTTGCTAATGTG 11697 25 100.0 36 ......................... AGCTTCAAACATTTTTATAACTTCATCAACTTGAAG 11636 25 100.0 38 ......................... CACACCAAGGAACTTCAGCCAAAGATATGCCAAGTGGA 11573 25 100.0 44 ......................... TGATAAATATGAAGTATTTACTTCCGCAATACTTGATAGAATTC 11504 25 100.0 37 ......................... GGTTTTAAACATCTCAAGAAGTCTGAGCGGTGGTAAA 11442 25 100.0 36 ......................... ATCTTCTTTAGAGGTGAAACATTAACAAGTACTTCA 11381 25 100.0 38 ......................... TCTTCGTCGCTATAAGTTTTTACCCATATTCTAATGCC 11318 25 100.0 40 ......................... CTAATTTTTTCAGTTAGTTCGTCCAACAATTCAGTGACTT 11253 25 100.0 38 ......................... ATTTTCTTCTGTGCGAGCTTGTTTACGTCGTTCAGCGT 11190 25 100.0 39 ......................... AAGATGAAGAAACGCTTAAGATCTTCAACTTGCTGAAGG 11126 25 100.0 41 ......................... GAGACCAATTAGCAGCAGCAGCCGAAAGCAGCGGTTATGCC 11060 25 100.0 40 ......................... AGTTAAACGAAGCGAGCAAAAGCGGAAAGAGAGGAAGGGA 10995 25 100.0 40 ......................... TTGGGATGCGCTGCTAAATGTCCAAACGTCCCCGTAACCG 10930 25 100.0 35 ......................... TTTACCTCGTCAATTGTGTTACCTTTGCAGAATTT 10870 25 100.0 40 ......................... CTACTTATTCAGGCCACTACTACTACACTACTCACACTAC 10805 25 100.0 38 ......................... AGTTGCTGTACCCCCTGTAGTTCGCCTCTAAAGATGTG 10742 25 100.0 37 ......................... GTAACCTTCATTGTCTCACCCTCCTCCCGTTTCCATG 10680 25 100.0 36 ......................... AGATAAAAACATGACTGTTACTGTATCTGATCACGG 10619 25 100.0 38 ......................... CCGTTCTCTGTTCTCTATTCTCTATTCTCTGTATATTC 10556 25 100.0 42 ......................... ATATATCTAATATTGCATCATTCTTATCGCTCATAATCATAT 10489 25 100.0 40 ......................... AGTATCACCCTTATCGTAAGTACATTATTGCTTGCGGTTT 10424 25 100.0 37 ......................... TTACATTCAAATGTTCCATCACTGGTGAAGTTTTGTT 10362 25 100.0 39 ......................... CTTACCGTAATATCAGTGTTAATGATCATGGTCTCACTC 10298 25 100.0 40 ......................... TTTATTTTCGTTATTACCAAATCACTAATATTTAATATTG 10233 25 100.0 38 ......................... TGTAATACTTGAAATCTCCTGCAAACTTTTTCCCTCTG 10170 25 100.0 40 ......................... TCACCATACACCTCTTCTAACACTTCCTCGAATGGATTTG 10105 25 100.0 37 ......................... ATCCATGCTGAGTTCAACTACGATGAACTGATGCATG 10043 25 100.0 37 ......................... TTCTCATCGTAAGGCTTGAAATATATTTTAACACTAG 9981 25 100.0 39 ......................... TATCTTCCCTTATAACGTATGTGGCGTTGGGGATTTTAC 9917 25 100.0 39 ......................... TTAGAACTTGCTGATATGGGCATGCTTTCTATTACCCTT 9853 25 100.0 41 ......................... ATATTATCGAAATCAACTACTCCACCAATATTAAACATTTT 9787 25 100.0 39 ......................... CCATTATTCGGTACAGCGTTTAACTGTAACACTATACTA 9723 25 100.0 39 ......................... CCATTATTCGGTACAGCGTTTAACTGTAACACTATACTA 9659 25 100.0 35 ......................... CGCCTACAACAACAACAACTACCACCACTACCACG 9599 25 100.0 40 ......................... TGTACGGGTTGGAAGAGACTCTGAATGAGTTTCTATTACT 9534 25 100.0 38 ......................... ATTCTGTCAAAGTATATTACCAGCTTTATTGAAGAATC 9471 25 100.0 37 ......................... ATATCTTTTTGGTTATATATTCCAAGTTTCACTTGGT 9409 25 100.0 39 ......................... TCAACTTATGCGCAATATGACAATGGAGAAAACGTATTT 9345 25 100.0 41 ......................... TTGACAAATATGATATCATAATAGACGCAAGAGGTGTAGAC 9279 25 100.0 38 ......................... TTTTGTGTCATCAAAAGTTCATTTAACTCTATCTTCAA 9216 25 96.0 0 ........................T | ========== ====== ====== ====== ========================= ============================================ ================== 70 25 98.6 38 GATTAATCCTAAAAGGAATTGAAAG # Left flank : GCCATATTATTTGAAGATTGGGGATTTACTTTTTGGGATT # Right flank : TACGCAATAGAGTCTAAGTAAAATAATCCTCATTAGAGTGAGAAAATAGCGTTTCATTAACCATTAAGTGATTTTACTTCTACCTCTCCAAAGCCAATGTTCCTACTCTTTCCCACGCCGAAGTAATTTACGTAATCCAATAGCCTCCTAATGTTCTCCCTTATCTTACTGCCTTTTCTAGCACTCAACTCAAACACAACCCATCCCACAAACCCCTTATTGGGTATGTTTCCGTAATAAGCAGTCATAGGTCTTATCCTATAGTTCACCTCTCTAAAGTAGTATAACGTCTTACTACCAGTAACTCCAACGATCTTCTTATCCATATATCTATTCCAGTGGGAGGCTATAGAGTAGAAGAGGAGTGGAACGTAAGGGAATAACACGTATCTGTTCTCTTTTCTTTTCATCCTAGGCCTAGGGGGTTGTAAAAGCGTAGGCGTCTTGAAGTGAACTCTGTAAAATCTGGCGTCCTCTGCCATGACGTTTTCCTTTACTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : GATTAATCCCAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //