Array 1 2525-1405 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWIL01000088.1 Klebsiella pneumoniae strain VRES0216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2524 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 2463 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 2402 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 2341 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2280 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2219 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 2158 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2097 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [2044] 2043 29 89.7 32 ......T.....CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 1982 28 89.7 32 .....-......CT............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 1922 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 1861 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 1800 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [1795] 1738 29 86.2 32 ...........CC..A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT TC [1722] 1675 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1614 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1554 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1493 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1432 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : TTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAG # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2216-851 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWIL01000032.1 Klebsiella pneumoniae strain VRES0216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2215 29 96.6 32 .............A............... AGAGGACTGGCACGTCACGCCCTGCTGCGGAC 2154 29 100.0 32 ............................. CTCCCCGACGGAATGTACGGCAATGACTTCGT 2093 29 100.0 32 ............................. TTGCGGACGTTCAGACGCTGCATGGCGTTCTC 2032 29 100.0 32 ............................. TTATCAATGGGGAAAAATCTTCATTTGTAACT 1971 29 93.1 32 ............CA............... AATCCTGGAGCTGGAAAGGGAGCTTGCCTCGC 1910 29 93.1 32 ............CA............... GCACCCTGGGATGCCTTTTGCACAGTGTCAGG 1849 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 1788 29 93.1 32 ............CA............... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 1727 29 96.6 32 .............C............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 1666 28 93.1 32 .....-.......A............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 1606 29 93.1 32 ............CA............... GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 1545 29 96.6 32 A............................ TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 1484 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 1423 29 96.6 32 ..............A.............. CACTACCAGATCCGAATGGACACCCGTAATGA 1362 29 93.1 32 ............CC............... GAATGAGAGCAAAATAATGAAATTAACAGGAC 1301 29 100.0 32 ............................. CTAATGAGCGGTATATTTTTTCTAATCTGAAA 1240 29 93.1 31 ............CT............... TGACTTTTAAAAAAATCAGCTGAAACAGCCG 1180 28 93.1 32 .....-.......C............... TGCGTGCAGTAAACGAAAATACATCGGTCAAT 1120 28 96.6 32 .....-....................... AATGGTGACAGGCAGTGCACCGGCCTAGAGGC 1060 28 93.1 32 .....-.......C............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 1000 29 100.0 32 ............................. TAAAAGCGTTTTACATGCATTCAAAAAAGTTA 939 29 96.6 32 .............C............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 878 28 75.9 0 ..........A.CA.........-.C.TT | ========== ====== ====== ====== ============================= ================================ ================== 23 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CACAAAGTCACAACAACAGTCAGCAAAAACCACGCGATGATCGTTATTGAGGATTTGAAGGTTTCCAGCATGTCAAAATCTGCAGCGGGTACGGTAGATGAGCCGGGGCGCAACGTTGCGGCAAAATCAGGTCTTAACCGGGCGATACTGGATCAGGGCTGGTACGAAATGCGCCGCCAGCTCGAATATAAGCAGCGCTGGCGTGGCGGGGAAGTGCTGGCAGTAAATCCGGCCTACACCAGCCTGAAATGCGCCTGCTGTGGTCATACCGCGAAGGAAAACCGTCAATCGCAGGCAGTATTTGTCTGCGTGGCGTGTGGTTACGAAGCGAATGCTGATGTAAACGGCGCGTGTAATATTTTAGCGGCAGGACATGCCGTACTTGCCTGCGGAGGGACGGTGCAGTCAGTCCGCCCGATGAAGCAGGAACCTGGCACTGAGCGATCAGTCGTCACCCACTAATAATGGGAATCCCCCTCCTGAATCTCGCAGCGTGAAGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //