Array 1 17641-20455 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWDE010000037.1 Phocaeicola vulgatus strain H23 NODE_37_length_49666_cov_47.918022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 17641 47 97.9 30 ...A........................................... ACTTGCATTCTTGGCTATTATCAGGCTGGT 17718 47 100.0 30 ............................................... CCTCGGGTGTACGCTTAGCACTCGTTACTG 17795 47 100.0 30 ............................................... ATGTTTTCATTTGTATATAGCTTGCACTTC 17872 47 100.0 30 ............................................... GAGGATACAGGTAGTTCCCCTTGGTCAGGT 17949 47 100.0 30 ............................................... CAACCTTAGCAGTAAACAATTTCTTCGAAC 18026 47 100.0 30 ............................................... AATCGATGCCGCAATGTTTTCCCCATGCTT 18103 47 100.0 30 ............................................... TTCACACGGCTGATCCCCGTAGGTTCAACC 18180 47 100.0 30 ............................................... CAAATTGCGTAGGTGTCATTTGCTCGAACT 18257 47 100.0 30 ............................................... ACACCGATACAACCAGTATAGTCACAATCA 18334 47 100.0 29 ............................................... ACTTGTATCTCGGTCTCTTGTCAAAGTGG 18410 47 100.0 30 ............................................... TGAATCTGAGTGCTCAAGTAATGAGAGCGG 18487 47 100.0 30 ............................................... TCTTCTCATACTCTATGCCTGTTTTAATGA 18564 47 100.0 30 ............................................... TCATACCACAATTCTTCCTCATTGTTATTG 18641 47 100.0 30 ............................................... GAAGCTGTCTTGCCTTTGCGCACTCCGTGC 18718 47 100.0 30 ............................................... AACAGTAGATTGAGTAGGATGCATCTGTGA 18795 47 100.0 30 ............................................... GTGTATGACGTAATATATGAGTTTAAGCCA 18872 47 100.0 30 ............................................... TCTGCTGCTCTAGACCAATCTACAGAAGCT 18949 47 100.0 29 ............................................... TTCTAACACAGGTAAGGCTGCTATTACTA 19025 47 100.0 30 ............................................... CGACCAGTATTTCTATCCTTAACTGAAATA 19102 47 100.0 29 ............................................... ACGCAATGGTTATAAACTTTCAGAGGCTT 19178 47 100.0 30 ............................................... AAGTGCATTTTGCAGCCATTCAGTAAGCGC 19255 47 100.0 29 ............................................... ACCCTTTAAAACTTTGTATTATGACTACT 19331 47 100.0 30 ............................................... CTACTGGCTGAATAATCGGTACCGCCAATT 19408 47 100.0 30 ............................................... TATTGTCCTTCTTTGTAGATGGTCTTACAT 19485 47 100.0 30 ............................................... CGATTTACCCGGTATAATTGAGTTTAACGA 19562 47 100.0 30 ............................................... TTACCCTGCGGAACAAGATAACGGCAGTCC 19639 47 100.0 30 ............................................... CGACGTGAACCTGTTGCCGTATTCCGATGA 19716 47 100.0 30 ............................................... GACAAGTTGTATTTAAAGGAGTTTCAGGCT 19793 47 100.0 30 ............................................... GGGTGGTCGAAGTGGGTATGAGTTTACTGA 19870 47 100.0 30 ............................................... GGGACACAAACATTCTGAAGAATCAAGGAG 19947 47 100.0 30 ............................................... GGCGTTTTCAATTACTTCGCTTAGAAAAGC 20024 47 100.0 30 ............................................... AGTTGGAAGGATTATATACCTTTGACACCT 20101 47 100.0 30 ............................................... TCTGTACCGAATTTCCCGGAGTAGATGCAA 20178 47 100.0 30 ............................................... TTAAGACTCGTGCGGTGGTTGCAGGAGGTC 20255 47 100.0 30 ............................................... CATCTTCACTACTGCGAGGTCGATGTTTGT 20332 47 100.0 30 ............................................... GCTAAAGTCTTTTTCCGAACGTATGTTTTA 20409 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 37 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGGTTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CGGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTCTGAAACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 635-1918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWDE010000130.1 Phocaeicola vulgatus strain H23 NODE_130_length_3211_cov_53.088086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 635 33 100.0 33 ................................. GGCCGCTTCAGTCATTTCCTTGTACAGCATGAT 701 33 100.0 32 ................................. CGTCAACATCATTGTAAACCCAATAAGTAGAG 766 33 97.0 33 ................................C TCTTGCTACTGACAAACCATTATATCCTGTTGA 832 33 100.0 33 ................................. TCTCTTCTCCCCATGAAAGCAAAAATTCCATTC 898 33 97.0 33 ................................C GTTTTATTTGGGTGAAGTCGTATAGCCCTGCCA 964 33 97.0 33 ................................G ATAGCAGCCTTGTTAAATGCCTGTGCGGAAATT 1030 33 97.0 35 ................................C ATGCCTGGTAGAACTCCTCCTCCAGCTCGGCCATG 1098 33 97.0 34 ................................T TGAATCCATAATTATGACCTTTGACGAACCTTCC 1165 33 100.0 34 ................................. AAACGTCCGATACGTATAAGGTTGCGTCCATACC 1232 33 100.0 32 ................................. ATCGACAGCACATTCTCCAATATTTCCATCCG 1297 33 100.0 32 ................................. AAGCATAGGAATCTGTTCGTGCCATCCTCTAT 1362 33 100.0 33 ................................. ATCTTACTTTCAGAAGTAAAGCATTTCACTTCT 1428 33 100.0 32 ................................. TTGGAATCAGCCTTTGCGGAAGCCGGAGGTGT 1493 33 100.0 34 ................................. TTCTTGGTCGCTGACTTGAGCGAAGATGAAAGGA 1560 33 97.0 32 ................................C TATAACGCGCGTATTGTAGAAAATACTCCATG 1625 33 100.0 31 ................................. TCCTTATATGTAAATCGAAGCATTGATAGTA 1689 33 100.0 33 ................................. AATTTGAGGAATCAGATAAAGATGTTGATTCTT 1755 33 97.0 33 ................................C TGAGCCAGCATCTCTCATAGCCCTCCTTCCAGA 1821 33 97.0 32 ................................C TGATTGGACGGCCGGGAATTCAGCACGGTGAT 1886 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 20 33 98.7 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : CTGAGCCAGCATCTCTCATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTTCCAGAGTCACACCCTGCGTGGGTGTGTGGATTGAAACATGTACAAAGGGATAGTAGAAAATAGAAGTTATGTCACACCCTGCGTGGGTGTGTGGATTGAAACTTTATAATAGGTTTCATGAATGTTCGGCATTTTGGGTCACACCCTGCGTGGGTGTGTGGATTGAAACCGTAATGGACAAAGGTACTGTTATTACGGAAAAAGTCACACCCTGCGTGGGTGTGTGGATTGAAACACTTATAATCTTACATTTGTTGTCTTTGCAATAGTCACACCCTGCGTGGGTGTGTGGATTGAAACGATTATGCACCCTCGTCAAACGGGGCAAGGGATTGTCACACCCTGCGTGGGTGTGTGGATTGAAACTGGGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2052-2546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWDE010000130.1 Phocaeicola vulgatus strain H23 NODE_130_length_3211_cov_53.088086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2052 33 100.0 32 ................................. TGTACAAAGGGATAGTAGAAAATAGAAGTTAT 2117 33 97.0 34 ................................T TTATAATAGGTTTCATGAATGTTCGGCATTTTGG 2184 33 97.0 33 ................................C GTAATGGACAAAGGTACTGTTATTACGGAAAAA 2250 33 100.0 32 ................................. CTTATAATCTTACATTTGTTGTCTTTGCAATA 2315 33 97.0 33 ................................G ATTATGCACCCTCGTCAAACGGGGCAAGGGATT 2381 33 97.0 32 ................................T GGGAAGCTTGCGCCGGATACATTATGGACGTT 2446 33 100.0 33 ................................. ATGACGAGGTGAATACGTGTATAGACAACCATA 2512 33 93.9 0 ....................A.........G.. | TA [2531] ========== ====== ====== ====== ================================= ================================== ================== 8 33 97.7 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : TGAAAGGAGTCACACCCTGCGTGGGTGTGTGGATTGAAACCTATAACGCGCGTATTGTAGAAAATACTCCATGGTCACACCCTGCGTGGGTGTGTGGATTGAAACATCCTTATATGTAAATCGAAGCATTGATAGTAGTCACACCCTGCGTGGGTGTGTGGATTGAAACAAATTTGAGGAATCAGATAAAGATGTTGATTCTTGTCACACCCTGCGTGGGTGTGTGGATTGAAACCTGAGCCAGCATCTCTCATAGCCCTCCTTCCAGAGTCACACCCTGCGTGGGTGTGTGGATTGAAACCTGATTGGACGGCCGGGAATTCAGCACGGTGATGTCACACCCTGCGTGGGTGTGTGGATTGAAACCTGAGCCAGCATCTCTCATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTTCCAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTTCTTATCTTTATAAAATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //