Array 1 18508-17080 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXRA01000011.1 Staphylococcus chromogenes strain SNUC 1386 contig011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 18507 36 100.0 30 .................................... TGATTAAAAATTTATCTATTAAAGAATATT 18441 36 100.0 30 .................................... TAAAAGAAAGTATTTATCCTAATAAATGGG 18375 36 100.0 30 .................................... GTTGAGGTAACAGGAGACACAGTTGTTTCT 18309 36 100.0 30 .................................... GTTAGAGCTGAAATAAGTAAATCTAATGTA 18243 36 100.0 30 .................................... GTCACCTGACCTGTTTTTTAAACCACACTG 18177 36 100.0 30 .................................... AAACTCTTGAGTTATTAAATAAATATGAGT 18111 36 100.0 30 .................................... TGTTCAACTGTTTCACTCACTGTCACTCTA 18045 36 100.0 30 .................................... ACAAACAGTACTTTAATATCGCTAAAATTA 17979 36 100.0 30 .................................... ACGAAAAAGAAATACAAAGACCCGGACAAA 17913 36 100.0 29 .................................... TTAAAGAGGCAGATATATTAATTAACGCC 17848 36 100.0 30 .................................... TACAAAAGATGACGGTCAAACTTATACCTT 17782 36 100.0 31 .................................... GCAAATCAATACAAATGTGTCAGACGATGAC 17715 36 100.0 30 .................................... ATACGCTTGATTTGTCTAAGGGAAAGACTT 17649 36 100.0 30 .................................... GAAAACGAAAGACTATATGACTTAAAGCAA 17583 36 100.0 30 .................................... CAAAGCAAGTAATTTAGCTGCGTCATCTGC 17517 36 100.0 31 .................................... ATTGACGTTTTCCCAAAGGTCTTACGACTGC 17450 36 100.0 30 .................................... TTCTTTACTCATATTTCCCATTTCTTCTTC 17384 36 100.0 29 .................................... TACTGACGATGATGATTGGGAGGTTATTT 17319 36 100.0 30 .................................... AAACTGGGACATATCCAGACTTCTCAATCA 17253 36 100.0 29 .................................... ATCAGCTACAGCGTCAGTAATGCCAATCA 17188 36 100.0 31 .................................... CTTCATTTGGCTTGAATGATTGGATAACTAC 17121 36 94.4 0 ...........................T.......A | C,AC,TTT [17083,17086,17090] ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.7 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : GATGACACCTTCATCATTTTCCTCTTTATTATCTTCACTATGACTAGCCGCAATCGTTAAAATATTGTTGTTAAAATCAACACTAATATCAGATTTGTCCATACCTGGTAATTCAGCAGACACGATATAAGCATCGTCACGTTCAGTAATATCTGTTTTAAAGTCGTTTGTATTTAATAAACCTTGTCCAAAGTCTCTAAATAAGTCACTTGGATTCATGTCAAAAATTGAATTGTTAAATGGTTTCATTTGGAATGCCATAAAGCATCGCTCCTTCATATTATCATTATTTCGTCAATATCAAGAAACTGGTTGTGATGAAGGGAGGTAACTGATGTCCTATCCCTTACAAGTCTTATTATAAGACAAAGGTCAAAATTAGTCAAGGTCAAAGTTTGATGTTCATTTTGATCTTAATCAGGATATGTAAATTTTTAGAGAAACCTTTACATATCAAGGGGTTATGCAATTGAGAGAGTTATAGTATACTGTAGCTAGAG # Right flank : TGTACTATAAAATAGAATTGAAAATTATCTTGACTTTATATTCTTACATGTTAGAATATTCTTACAAGTACTTATTGTGCTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTATGCTTAATTTATAATTGTAACTAAAAAGGGGGATACATAACATGACGAATTATATACTTGGACTCGATATAGGTATTACTTCTGTTGGATACGGGATTGTTAACAGTGAGACGAGAGAGATTATAGATGCAGGGGTACGACTTTTTCCAGAAGCAGATGTAAATAACAATGAAGGTCGACGTAGTAAAAGAGGAGCACGCCGTCTTAAAAGAAGACGTATACATCGTTTAGAGAGAGTCAAACAGCTTTTAGCCGAATACGAATTGTTAAATTCTTCATCTATTCCACAAAGCACCAATCCTTACGAAATACGTGTAAGAGGATTAAGAAATGAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //