Array 1 91374-89580 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB850958.1 Clostridium thermobutyricum strain 209318 acBRg-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 91373 29 100.0 36 ............................. AGTTTTCTTATTAATGCACTATTAAGTCTTAATGAT 91308 29 100.0 37 ............................. CTGTTATAGGATATAATTCATTTACAAATCCATTTTC 91242 29 100.0 37 ............................. GTACGCAAACTAATTGTATCGTAAGTTCTGCATATAG 91176 29 100.0 37 ............................. ACCATTCGTTGAATTTTTCGTGGATTATTTATAAATC 91110 29 100.0 36 ............................. TATTTTTCACCTTTATAAGTTTGTCTTACTTCAATT 91045 29 100.0 36 ............................. CCAATATTTAATTCCCAAATTCTAAAACTAATCCCC 90980 29 100.0 36 ............................. TAATAATATACTAAATACTGGGTATTGTTTTATCAA 90915 29 100.0 37 ............................. TTATGGAAGCACAGAATAGATTAGATAAGAATAAATT 90849 29 100.0 35 ............................. TGCTCTAAAATCGAAAGAAATAACTTTTACTTCAC 90785 29 100.0 35 ............................. AAAAAAAATAAGACCAAGCACTTAATCTTGGTCTC 90721 29 100.0 36 ............................. GCAGCTTGAAGAAATCTTCTCATTCTGCTACTCAAA 90656 29 100.0 37 ............................. ATTTTTGTAACCCGATGTAACCTTAAGTAGCCTTTAA 90590 29 100.0 37 ............................. TCATCAACTGGAGTCATATCATCATTAAAATTATCAT 90524 29 100.0 36 ............................. TCTGCATTATAATGAATTAGCATTTTATCTTTATCT 90459 29 100.0 38 ............................. AGTACAATTTAAAATAATCCAGGAAGCAGGAACAAAAA 90392 29 100.0 37 ............................. TTATTAAGCTCTCTTACTTCAGCTAATTCTTCTCTAG 90326 29 100.0 36 ............................. CAATATAATAGTAAATATTAGTTTAAAATTTGGCAA 90261 29 100.0 36 ............................. GTTATATAGTCTATCTTTTGTTCCAGTTCTTCTATT 90196 29 100.0 36 ............................. TAAATTCTTTTGGTTCATCTTTTATTTTTATATCTT 90131 29 100.0 37 ............................. TTAAATTCAATTCTTAGATGTATGGAGATAATGAAAG 90065 29 100.0 37 ............................. GAAGAAGTTGAGGTGTTTGGCTTAGGTTATGAAAATA 89999 29 100.0 37 ............................. ACACTGTTGGTAGCTGATTGGCCATTTTCCAACACAA 89933 29 100.0 36 ............................. TTTTATAAAAGGATATGAAGGTTTCGCACCTAATTT 89868 29 100.0 36 ............................. AACACTGCTGTTACTTTTGCACCAAAACTTTCTAAA 89803 29 100.0 36 ............................. TAGAATAGAAGGAGGTAGGAGGGATTTTCCCTCCTT 89738 29 100.0 37 ............................. GTATAATCAAATAATGATAGTATAACTTTTTTATTCA 89672 29 100.0 36 ............................. AAAATAGAAAAGCAACTGGCAATTAAAACTCACTAG 89607 28 72.4 0 A...........T...-.A....T.T.TA | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 99.0 36 GTTTTAGATTAACTATGTGGAATGTAAAT # Left flank : AAGCTGTAGTTGAAGATGAAAAATACAAAGGATTAAAAGCGTGGTGGTAGATGTTTGTTATAGTTGTATATGATGTTGGAGAAAAAAGAGTAAATAAAGTAAGAAAGAAACTTAAAATGAGTTTAACTTGGACTCAAAATTCAGTATTTGAAGGCGAAATAACAGAAAGCAAATTGAATAGGCTAGTTCATGATGTTAAAATGTATATGGAGATAGGAGATTCTCTTTATGTTTATGAAGTTAAAAATCCTAATAATATAAATAAAAAAGTATACGGAATAGAGAGAAATGCAGATACATTATTTATTTAAAAAGTAATTTGCAGTAAACCTAATTTTTATAAATACATTAGAAAAGCATTGATGTTACTTAGCTTAGGTAGGTTTCTTATAGATAAATTAAAAACTTATTAATGGTTTACTGCAAAATAATAATTATTCTGTTAAATAAAATGCTTGAAAATGGCTTAAAATGGTGAGATTTTTATATAAAAAAATAGG # Right flank : AAGAAGGAAAACACGAAATATACAATGAATATGCATAAAATAATATATTTTATTAAAAGCAAGTATACTTAAAGCTAAATCCAAATGATTTAATTAAGTATACTTCTTTCATTTTTATATATTAAAATAAATTTTTAACAATAAAAAATATGAAAAATGAATTTATTAGATTAATTGCTTTCAAAAAAATATTAATAAAGAGTAAAATATTGTATTCTTATATAAATTTTTAAAATGCATTATTATACATAAGGTTATAACTTAAATTAATGATTTAATAAAAAAAATGAAAAGTTTTATTAATATGATTAAAAATAAAAACAAATTAATAAAATAAAAATTTTATAATGCTCTTTTAATAGAATTTTAATTTATGCAGAGTTGATTATTAAATGCATTCAGTATATCATACTAAATAAGAAATTTCTGAACATTTAAAAAAACTTAAGTTTATTTATTCGTAAATATACGAATAAAAGAATTAATTAACGAAAGAAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 69734-69270 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB850959.1 Clostridium thermobutyricum strain 209318 acBRg-supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 69733 36 97.2 30 ...............G.................... CAACATCTAAATCAAGTTGTTCTTGTAAAG 69667 36 100.0 30 .................................... AAAAATGCAGTAAATCCCCAACCGACACCT 69601 36 100.0 30 .................................... AAAAACGGAGTTGATTCAATGCCCCTTTTT 69535 36 100.0 30 .................................... CCAACCTTCTAATGATAATACTTTTATTTC 69469 36 100.0 29 .................................... CGTGTCCGTGATGTGATGTCACAAAGCTA 69400 36 83.3 4 ..............................NNNNNN NNNN Deletion [69361] 69368 34 83.3 29 --NNNN.............................. CTTACGTGTCCGTGATGTGATGTCACAAA 69305 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 95.5 26 GCTATAGTTCCTAGTAAATTTTTGATATGCTATAAT # Left flank : TTTGTATCATGTTATATTCATTTTTTACCTGGATTTCTATATTTATATGTTCTTTATTATTAGTGGTGGCTTTTATATCTAACCTACTAAACTTACTTTCTAAATACTCTTTATCTATATCATTGTTTCTTATTTCGACTTCTTGTATTGGATTTGTTGGTTTAATTACTGCATTTAAAAAATTTATTAATATAGGTTTATTCTTTTCTGACCCAAATATCTTTTTAAATACAAAATCTATTTGCGGATTAAGTAATGTCCTATATACCATGATAATATTCCTCCTTATTGGTTAGTTTTTATAGTTAATTATATTATAGACTATTATATAATTTTAAAATACTATATTTTCCTAAATTATCTGAAAAAGAACTAATTATATTATCAAAATATTTACCTAAATTACTAACTTATTCTTTTAAACTTCTAAGTTAATTATTAACGCCTTCAGTAGGAGTAATATCTTTAATCTAAATAGTTTCATTGATACCATTGTTATT # Right flank : ATGAATTATAAAACCCGTTGAAATTACTTAGTTTCAACGGGTTTTAACTTTCTAAAAAATACTCAATTGTGATGAATTTATAGTCTTTTCTTGTTTTTTTGGCATACCTACTAAGAATTTCATTTCTGAAAATTGTTTTTCTGTTATCTTTAAATATCTAACTGATCCTTTTGATGGTAAATTATTTTCTAATCTATTTAAATGTTTGTTTATCCCATCTATTCCATTACATATTCTTGTATAAACTGAATATTGAAGCATGATATATCCATCGTTTAATAAAAATCTTCTGAAATTTTGATAATCTTTCCTATCTTCTTTTCTAACAACAGGCAAATCAAAGAAAACTAATATTCTCATAAATTTATTACTCATAAGAATGATATTCTAAATCTTTTATAATAGGAACTTTTAATAATCTAAAGTCTTTATTATTTACTGCTGTCTTATAGGAAGATATCATTTTATCTATTGCATTTAAAATAGAATGGTTTTTATTT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATAGTTCCTAGTAAATTTTTGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2163999-2164693 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB850956.1 Clostridium thermobutyricum strain 209318 acBRg-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2163999 36 100.0 30 .................................... ATATTTGCATATAAACACTATTGCTAATAA 2164065 36 100.0 30 .................................... AACATTAATTCATTTAAGCGAAAGTAATGC 2164131 36 100.0 30 .................................... TAAGGATGTGAGATAGTTGACTAATACTGT 2164197 36 100.0 30 .................................... AGAAGCAAAGTTTTTAGGAAAGAAGCAATA 2164263 36 100.0 30 .................................... TAGTGAATTACTAAATAAACTGTCAATTAT 2164329 36 100.0 30 .................................... TTTAACTAAAATTGCTAAAGCGCTTAAAGT 2164395 36 100.0 30 .................................... ATGTATGGAGAAGTTAGGTTGAAAGGGGAG 2164461 36 100.0 30 .................................... CTCATTCTTCTTCTTGTATTAATGTATAAA 2164527 36 100.0 30 .................................... AAAAATATATTTGATGAATTAACTTTAGTT 2164593 36 100.0 29 .................................... TATTTAATTTTTTGGAATGAAACGCAGTT 2164658 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTATAGTTCCTAGTAAATTCTTGATATGCTATAAT # Left flank : AAAATATAACTTTACGAATTCATTATATTGATTTTTATTTATTTGTATATATTTTTCACCATATATGCCTTGTGTTTCATCTATCAATATAGTATCCCATTTATTATCTATCTTTGCATTACAAAATTTTTTTCTTAGTTCACTTGTTTCGTTATCATAATCTTCTGTAATTTCTTGCATAAACTTATAAATTGTATATAATTCAATATTACTTATTTCACCCAACTCATTCTTTATTATATTTTTTATTTCTGATTTAAATATTAAAATCAATACATTTTTACTTTCTACAGCATCTATTTTTGCTTTGTTAACTATATCAATTATTTTATCTTCTAACCTATTCATTTCATATTTAAACATAATATATTTTTTAAATCTTTCTTATTAGTTATAAAATTTTCTTCTTTTATATCAGGTAAAATTACTACATTAAAAGTTTTATATCTTCTTTCTAATTCATAATATAATATTCCGTTTTTCAATACTTAGTTTATACA # Right flank : TAGAAACTATGAAACCCGTTGAAATCACTTAGTTTCAACGGGTTTTAACTTTCTAAAAAACATGAACTTATAGTCTTTTCTTGTTTTTTTGGCATACCTACTAAGAATTTCATTTCTGAAAATTGCTTTTCTGTTATCTTTAAATATCTAACTGATCCTTTTGAAGGTAAATTATTTTCTAATCTATTTAAATGTTTATTTACCCCATCTGTTCCATTACATATTCTTGTATAAACTGAATATTGAAGCATGATATATCCATCGTTTAATAAAAATCTTCTGAAACTTTGATAATCTTTCCTATCTTCTTTTCTAACAACAGGCAAATCAAAGAAAACTAATATTCTCATAAATTTATTACTCATAAGCATGATATTCTAAATCTTTTATAATAGGAACTTTTAATAATCTAAAGTCTTTATTATTTACTGCTGTTGTATAGGAAGATATCATTTTCTCTATTGCATTTAAAATAGAATGGTTTTTATTTTCTATTATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTTGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //