Array 1 7586-8034 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQRH01000015.1 Serratia fonticola strain 5l contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7586 28 100.0 32 ............................ TATCTGAGTGATAATCATCGACGTTATCCACA 7646 28 100.0 32 ............................ CTGCGTAGTTCACCACCCAAGATTGGCCTCAA 7706 28 100.0 33 ............................ CCAATGGAATATGAGTACAACGGCGATCTGTGT 7767 28 100.0 32 ............................ AAGCTGGCCCACATGCTGAGCCCGAACTTGCT 7827 28 100.0 32 ............................ TGGCACAAGACGAACCGCAACAAAGGCAACAG 7887 28 100.0 32 ............................ TCTAACGCAAACGAGTTTAGGCGCGTGGCCGT 7947 28 100.0 32 ............................ ATAAAGCCCTGCTGCAGATGCGTAGCGCCAAT 8007 28 92.9 0 .......................G...G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGCGCCGCAAACCAGCGCCAAGAGCCTGGAGTTCGACTCGTCTTTTTTGAATGTTGATGACGTACAGTCGATCTATCTCAGCCGTTTCGCCGAAGGTGCCTCCAGGTTGCCCGGAATTTACAAAACCGCGCTGTATGTTAACGGTCAACTGATCCGTAATACCGATATTGAATTCAAGTCTTGGGCCGATAAGTCGGTCTATCCCTGCCTGACCAGCGACATTATTAAAAAATATTGCGTTCAACTTTTCTCCGCTGAAACTCTTCCGCACGGTGGTATAAAAAACGAGCCACATTCACCCTTGGTAGCTCTGTAATCATCATCTGAAGCTGTATCTATCCATGAGACTCGTAGTATGTGTCGTTCTAGACCCTAATTTTGGGGTGGTTATTAACTAATTGATTTTAAAATAAATTCATGGCGTGAGTGAAAAAGGGTTTTCCAGAGAATTTCAAAGGTTATTGTTTAAGTAACAGAGAATTAGCGCTAGGATGTAACA # Right flank : GGTTGGCGCACCGCCAACTTTCACCCCAAGATTGTTTTTATTATTAAGCTAACTGATATAAATGATTCATAATTTGTATCTATCTCTATGATTCATCATCAATATAAATTAGATGAAAATCTAACATCAATCACTCTATACAGTGAGCCTATTATGTTAAAACAACAATATCGCGTTGGCATCTGTCATAGGTAATCACGTCTTGGATGATTTTATGGCATAAAGCAGGGATGTTTTCATTTAATGCAAAATCAATTTTCGCCTTCTGATCTAAAAACCATCTTGCATTCAAAGCGTGCGAATCTTTACTACCTGCAGCATTGTCGGATCCTAGTCAACGGCGGCAGGGTGGAATACGTTACGGATGAAGGTAAGCAATCCTTGTATTGGAACATCCCGATCGCTAATACCACAGCTGTAATGTTGGGGACGGGAACTTCTGTTACTCAAGCGGCAATGCGTGAGTTTGCTAAAGCCGGGGTGCTGGTTGGATTCTGTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 16533-17580 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQRH01000015.1 Serratia fonticola strain 5l contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16533 28 100.0 32 ............................ AACCCAAGGCATCACGGCAATGATCTTCAGCT 16593 28 100.0 32 ............................ ACTAAATCTTTGAACATCTTTTCGATGCCTTG 16653 28 100.0 32 ............................ GCACTCATCGCGCTGCGGCTCCATTGCTGTGA 16713 28 100.0 32 ............................ AACCGGCGTGGCCATCAGCTTGAAGAAAGTAC 16773 28 100.0 32 ............................ AGATATTCCAGACACCGAACCAGCACCAGCTT 16833 28 100.0 32 ............................ ATTAACGGTGGCTTTAGCTAAAGTAACCACAT 16893 28 100.0 32 ............................ CGCAGCTTCGAATTCGGCCACGGCCTTTTTAA 16953 28 100.0 32 ............................ TTGCGTAACGCCTCAGCGGTACCCGCATCGAT 17013 28 100.0 32 ............................ GTTAGCGTTGTCGCTCCACTTGAAACGAGCGC 17073 28 100.0 32 ............................ TATGGCAAAGCCAGCTTTAGATAGGAAAGCGG 17133 28 100.0 32 ............................ ACTCCGTAGCATTTTGCGATGTACAAACACTG 17193 28 100.0 32 ............................ GAGAGGCTTTACAGGCAACAGGGCATCGATAC 17253 28 100.0 32 ............................ CCATTGATAAACGGAAGAGCGATGGCATTGAA 17313 28 100.0 32 ............................ AGAACGGACTCATGCGCGACGTGTTTGTGATC 17373 28 100.0 32 ............................ TTTTGAAGATAATCCTCTTCAGGGTCATTTTT 17433 28 100.0 32 ............................ TTGCTAACATATCTATGTTGGCTAAAAACCGT 17493 28 96.4 32 ...........................G GGTTTACCCCTGAGAAAGTTAGAGCGGCTTTC 17553 28 75.0 0 .C.....A...C.C...T......A.C. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGTGCTCACTGCCTTTGAGACTTTACCTTGGCGTAAAGGATTACGGGATTACACGGAATGTGGCGAAATTCTGCCGATACCCGCCAATGTAAAATATCGTACAGTGCGACGAGTGCAGCTCAAAAGCAGCGCCGAGAGATTACGTCGTCGCTCTGTTCGCAAGGGATGGGTAACTGAAGAAGAGGCTCGTCTGCGTATTCCTGATGCCGTTGAGAAACGCTCAGCATTGCCATTTATTCGTTTAAAAAGTCTATCCAGCGAGCAAACCTTTTTGTTGTTTATCGAACAAGGCAAGATTTGCGATAACGCAACAGAGGGGGTATTTAGTGCTTATGGTCTAAGCGCAACGGCAACCATCCCGTGGTTTTAACCCTAATTTAATGACTGATTCTAACCTATTGATTTTAAAGGTTGGCGTCAGTCATGTTTAGAAAAGGGTTTTTGGGTGGGGTGGCGGGATTCTATTTTATTAACAGTTAGTTACCGTTAGCATGTAACA # Right flank : ATTAATCTGGAGAGGGAGGCGCGTTGAAGGTCTCAATCTTCGCGTTTACGGAAATAATGTCCACAGTGGGGGCAGATCAGCGTGACGTTTTTTTTCACCTTACTGCGATTTTGCGGCGAACTTTTTGCGCATTCAGGGCAGGTGACATCAACGGGGGCGTCACCGAATAGCTTAAAAGCATCAAAGAAAGACATCTTTTTCACCGGGTAGAGGTAGGAGGAGTTCAGTGTACCTTTATCGCTCGGTGATAGCTCCACATAGATTGGTAAACCACTGGTAGAGACGTAGCCAGCTGCGCGCTAAAAAGGGAGTAACAAGTGGGGAGAAGGGGCGAGGGGGAAGAAAAAAGCCCCGCAAAAAATGAGGGGCAAACACAACAACACCAGGGAAATCGTTGATAACTAATCTGCTATTACTATATGTTTTTTGACACGAGAGTTCATCAATAAATTGCTGCATTATTGCAACATTATAGTTAATTAATTTGTATGCATTTGGCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //