Array 1 42169-39578 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHZZ01000047.1 Escherichia coli strain 22-1BK entry47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42168 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42107 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 42046 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41985 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41924 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41863 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41802 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41741 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41680 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41619 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41558 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41497 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41436 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41375 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41314 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41253 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41192 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41131 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 41070 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 41009 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40948 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40887 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40826 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40765 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40704 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40643 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40582 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40521 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40460 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40399 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40338 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40277 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40216 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40155 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40094 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 40033 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39972 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39911 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39850 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39789 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39728 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39667 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39606 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43781-45336 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHZZ01000061.1 Escherichia coli strain 22-1BK entry61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43781 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 43842 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 43903 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 43964 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 44025 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 44086 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 44147 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 44209 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 44270 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 44331 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 44392 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 44453 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 44514 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 44575 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 44636 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 44697 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 44758 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 44819 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 44880 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 44942 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 45003 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 45064 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 45125 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 45186 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 45247 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 45308 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //