Array 1 4423310-4422976 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031418.1 Nocardia farcinica strain W6977 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4423309 29 100.0 32 ............................. CGGGCCAACCCCGCCCGCGAGCACAGCATGAG 4423248 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 4423187 29 100.0 32 ............................. GGGTTGACACTGGTCCGCAACGAGACCGGTAA 4423126 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 4423065 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 4423004 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAATCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGGCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4431200-4430502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031418.1 Nocardia farcinica strain W6977 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4431199 29 100.0 32 ............................. AGGCGGTGCTCGAAGGTCGTGAAAACATTGCT 4431138 29 100.0 32 ............................. GGCGGCGCCGCGGGCACCCGCACCCCCTCGAC 4431077 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 4431016 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 4430955 29 100.0 32 ............................. CAGCTCAGAAAGCCGTCGAGCAGCGTGCCGGT 4430894 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 4430833 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 4430772 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 4430711 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 4430650 29 100.0 32 ............................. GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 4430589 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 4430529 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGCGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGAGGGCGAGTGTAGGGATCCCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTAGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGGCGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACCTCGTCGACTTTGCCGCTGGGCAGTTCCCAGATGCCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGGCATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCCGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5113954-5114347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031418.1 Nocardia farcinica strain W6977 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5113954 28 100.0 33 ............................ CCCGCGAAGCCTTCGCCGAGGCCGAAGGAATCC 5114015 28 100.0 33 ............................ CGGGACCGACGTGGCGCGTGCCGAGGAATTCGA 5114076 28 100.0 33 ............................ CCCCATGACCCCCACCGAGGTCGACGCCGCGTG 5114137 28 100.0 33 ............................ CGGCAGGGCGAAGCGGGCGATGCCCGCCGACAG 5114198 28 100.0 33 ............................ CTACGAGAGCAAGGGGATCGGCCTGGTCCTCAT 5114259 28 100.0 33 ............................ CGGCGGATTCGGGGTGCGCTGATGCATCCGCTG 5114320 28 92.9 0 ...........C........A....... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GTTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTGTTTATTTTTCGTGGGCCTTCTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAAGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CCGGTCGACGTGGCGTGGCCCACGGCTCCCGCAGAGGAGGTGTTCGGCTGCGTCGTCTGCGTGTGCGCCGCCCACTGACATGTGTGGGTTTCGGTAGTAACCGCCGAAAACCAACGGATATGGCGTAGAAGCTGGTCGGCGCCGGTTCGTGTCCGGGGCCGAGGAGCGCGGTGAGCTTTCAATCAAGCGTCCACGGTTCCTGGAGGGTTAGCCTTTCCTGCATGAGCACGCCCGACACCGCACTATCAGCCGCAGCGGCCGGTCGCCGCCGCTTGTCCTTGGGTATGTTCGCGCTGGCCGTGATCGTGTATCTGGCGATCATCCAGCTCGGTGGTCTGTTGATGACCGCGTTGACCGGTGAGGACGATTTCCTGTCCACGCGCGCGGTGTTCTACGGCATGATCATCCCCCTCGGTATCGCCTTGGTATTCACCTACGGGTTGATTGCCTATCTGGGATGGCTCCACCCGGTCTTGCATGATGATCGCTCGGTCCGGTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 5116053-5116508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031418.1 Nocardia farcinica strain W6977 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5116053 29 96.6 32 ................T............ GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 5116114 29 96.6 32 ................T............ TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 5116175 29 100.0 32 ............................. TGATCCGGGCGATCCTCGACGCCCTCACCGGC 5116236 29 100.0 32 ............................. TGAGCCGCGATACCTATCGAGCTACGTAGCCA 5116297 29 96.6 32 ....................A........ GAGAGTTACTGATCGGGATGACTTGAGGGTGG 5116358 29 100.0 32 ............................. CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 5116419 29 89.7 32 C...................A..T..... GAGAAGCTGATCGTCGCCGACCTCTTCACGCT 5116480 29 75.9 0 ..............T..T.C.TC.C.G.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.4 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGCGGAAGGTCTTCGTCGTGGACAACGTCCGGGCGATTTCGGCCACCGAGCTGGCCGGCCGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5127468-5128060 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031418.1 Nocardia farcinica strain W6977 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 5127468 29 93.1 32 .......T....G................ AGGTGTCAACCGGGGCACCACACACCACAAGG 5127529 29 96.6 32 ............G................ CGGCCCAATCGGGGCACCCAAGCTGATGTACC 5127590 29 96.6 32 ............G................ GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 5127651 29 96.6 32 ............................T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 5127712 29 100.0 32 ............................. GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 5127773 29 96.6 32 .............G............... GTGAACACGGTGACCGGCCCGTACCGGCTGTT 5127834 29 100.0 32 ............................. GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 5127895 29 96.6 32 .............C............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 5127956 29 93.1 46 ..........T..............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC C,T [5127961,5127984] 5128033 28 75.9 0 A.......G..A..T..-C...C...... | ========== ====== ====== ====== ============================= ============================================== ================== 10 29 94.5 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : CGGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 5137245-5138309 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031418.1 Nocardia farcinica strain W6977 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5137245 28 100.0 33 ............................ CCGCGAGATGCTGGAGCGGCTGATGAAGACCCG 5137306 28 100.0 33 ............................ GGCAATTTTGGTGGCGTGCTCGTAGTAGACCGG 5137367 28 100.0 33 ............................ ACTGTGATTGACAGTGTGGAAATCTACGTATGC 5137428 28 100.0 33 ............................ CGACACGACCCTGCAGCGGATCGTGATCGCCTG 5137489 28 100.0 33 ............................ CCAGCCGCCGCTCATGATCGGCGAGGAACATCA 5137550 28 100.0 33 ............................ CAGCCCAGCGCAGCGACCACCCGACCAGGTGGG 5137611 28 100.0 33 ............................ CACGGTCGCCCGAGCGATCAACGAGCTACAGAA 5137672 28 100.0 33 ............................ CGCCTTCGACCCGGCCGACATGACCGCCGCGTC 5137733 28 100.0 33 ............................ CGCAGGCGCGAGCGCAGCTCGCGAACGACGGCG 5137794 28 92.9 33 ..........................AA ACCGGCGTGCGGGAAAAGGTGCAGGCCGTGGTA 5137855 28 100.0 33 ............................ GGCGAGACCCACGGCCGCACCATCGGCATCGGC 5137916 28 100.0 33 ............................ CGGCGGCATCACCCGCACCGTCACCATCCAGCT 5137977 28 100.0 33 ............................ CCTTGACCGGGGTGTTCGCGCGTTCGGCTTCCC 5138038 28 100.0 33 ............................ CCCGATGACCGCCATCCCGCCACCCAAGCGGAC 5138099 28 100.0 33 ............................ CCGGTCCTCACCCGTGTCGGGCCCGCGGTACTG 5138160 28 96.4 33 ........G................... CTCGAACGGCAGCGTCCAGAGGTCGCCCTCGGT 5138221 28 100.0 33 ............................ CCAGCCAGCAGCGAATGCGTTGGCGGTCAGCAT 5138282 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCTCGGAGGTAGTCACCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGTCATCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGGGGAGGCGGCCGCGTCGACGTTAGGTAACGACTGCATACACCTCACCCCCCGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTGGTTCTTCCCGGCCTGGGTGCGGCGTTCTCGGCGCCCGGTCTCCCGGTCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 5251868-5253113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031418.1 Nocardia farcinica strain W6977 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 5251868 28 100.0 33 ............................ CCCGCTCCCCCTATCCGGCTGGTAACCGGATTC 5251929 28 100.0 33 ............................ TCCGAGCCCGACCAACCCCAGGTCAGAGGCACA 5251990 28 100.0 33 ............................ CGCATGGACCCCGGCCACATGCGCGGCTTCATA 5252051 28 100.0 33 ............................ CTAGGCGGTCACCGTGTTGCTGGGTTTGAATCG 5252112 28 100.0 33 ............................ CCGAATTGGGTATCGAAATGGTTTGCCACGTCA 5252173 28 100.0 33 ............................ CGCGGTCAGGCTGGTGTTGATCTCGCTGATCTG 5252234 28 100.0 33 ............................ CGCCTGCCTAGGGAGTCCGCCGAACATGACAAC 5252295 28 100.0 30 ............................ CGCCAAACCCACCACCACCACCGCGGCGAC 5252353 28 100.0 33 ............................ CGCCGACTCCTTGGACTCGACGTAGTTCTTCAG 5252414 28 92.9 33 AT.......................... GCCGAGGTCGATTCCGCGGGCGTCGGCGTAGGC 5252475 28 92.9 33 AT.......................... CTGCTCGACACCGCTTCGCGTGAGGCACCAGGC 5252536 28 92.9 33 AT.......................... CTTCCGCTTCTGACGAGCCGAACGCCGCTCGGT 5252597 28 92.9 33 AT.......................... CCCTTCGACCGGTCGGGCGTCGTCCTCGAGGAC 5252658 28 92.9 33 AT.......................... CGGGTTCACGGGCTGGGCGACCGGGAAGCGGTT 5252719 28 92.9 33 AT.......................... CACCGCGCCCCAGACGGACGCCCACACCCAGGA 5252780 28 96.4 33 .T.......................... TCACCCGGTCACCGTCCGCCACTCGGTGACGTA 5252841 28 92.9 33 .T............C............. CTCGCCAGCGTGCCCGCGAAGGTGGCCGATGCG 5252902 28 96.4 33 .T.......................... CGACGTCGAGAAGGCGCAGGCCCAGGTCAACTT 5252963 28 96.4 32 .T.......................... CGCGAACGGGCGCCGCCGTCGTCGGGGAAGAG 5253023 28 96.4 35 .T.......................... CCCGGTACCGCCGCCGCCACCCCCCCGCCCCCGCC 5253086 28 89.3 0 .T............C...........T. | ========== ====== ====== ====== ============================ =================================== ================== 21 28 96.4 33 GCGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCGGCGAGGTGCTGAGTGCGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTGGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAGCCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGGCCCGCGTCCTCGACCCTCGGGTGCGCACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //