Array 1 662-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCB01000131.1 Mycobacterium tuberculosis strain Bir 77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 661 28 100.0 45 ............................ TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCGGTCGTCA 588 28 89.3 44 GA..C....................... GCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGGGTCGTCAG 516 28 100.0 48 ............................ CTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACGGTCGTCAG 440 28 100.0 46 ............................ TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAGGTCGTCAG 366 28 100.0 48 ............................ CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGGTCGTCAG 290 28 100.0 46 ............................ TACACCACGCGTCGTGCCATCAGTCAGCGTCCTCCTGGTCGTCAGA 216 28 92.9 46 C..A........................ CCATATCGGGGACGGCGACGCTGCGAGAGGACACGCCAGTCGTCAG 142 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 8 28 97.8 46 ACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CCCCTCTCGGGGTTTTGGGTCTGACGACACTCTCAACCGCGCCACGCTCAAAAAAAGTGTTATTGGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGATCCGCGAAATTCACTGCGCGTTATTCACGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTAAGTGCCCCACGGCCCGGTCGTCAG # Right flank : CGCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAGGTTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAGGAGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 2 919-1973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCB01000131.1 Mycobacterium tuberculosis strain Bir 77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 919 36 100.0 43 .................................... CCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAA 998 36 100.0 24 .................................... CGTGAATAACGCGCAGTGAATTTC Deletion [1058] 1058 36 94.4 39 .CG................................. CCCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGT A [1062] 1134 35 97.2 34 ............................-....... CCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 1203 36 100.0 36 .................................... CGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 1275 36 100.0 38 .................................... CTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 1349 36 100.0 41 .................................... CGTAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 1426 35 97.2 35 ...........................-........ CCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 1496 36 100.0 40 .................................... CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 1572 36 100.0 38 .................................... TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 1646 36 100.0 35 .................................... CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 1717 36 100.0 36 .................................... CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 1789 36 97.2 37 ......G............................. TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 1862 36 100.0 40 .................................... GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 1938 36 97.2 0 ...C................................ | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 98.9 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GTCCCCTCTCGGGGTTTTGGGTCTGACGACCGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGCGTTTCCGTCCCCTCTCGGGGTTTGGGTCTGACGACCGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGGGCCGTGGGGCACTTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA # Right flank : AC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1211-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCB01000019.1 Mycobacterium tuberculosis strain Bir 77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1210 37 94.6 39 A.................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTG 1134 37 100.0 35 ..................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCGC 1062 37 100.0 33 ..................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCG 992 37 97.3 40 ...................................C. CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCC 915 37 100.0 35 ..................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGA 843 37 100.0 33 ..................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCG 773 36 97.3 40 .........-........................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTAC 697 37 100.0 36 ..................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAC 624 37 100.0 35 ..................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAC 552 36 97.3 40 .........-........................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTAC 476 37 100.0 35 ..................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAA 404 37 100.0 36 ..................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCC 331 37 100.0 35 ..................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAA 259 37 100.0 32 ..................................... ATGCGAATCCGCTGTCAGCACATGGGATTTCG 190 36 97.3 40 .........-........................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTAC 114 36 97.3 39 .........-........................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCA 39 37 97.3 0 T.................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 98.7 36 GGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Left flank : TCGGGGTTTTGGGTCTGACGACCACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCGGTTTCCGTCCCTCTCGGGGTTTTGGGTCTGACGACTCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGGGTTTCCGTCCCTCTCGGGGTTTTGGGTCTGACGACTCGACGATTGGGACATCGACATCGACGCGATCGTCGACGAGTTTCCGTCCTCTCTCGGGGTTTTGGGTCTGACGACGTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGAGGACATGGAGCAGTAGCGTGGCTGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCA # Right flank : CCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 1788-1391 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCB01000019.1 Mycobacterium tuberculosis strain Bir 77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================== ================== 1787 27 100.0 45 ........................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAGGTTTCCGTC 1715 27 100.0 44 ........................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCGGTTTCCGT 1644 27 100.0 47 ........................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGGGTTTCCGT 1570 27 100.0 48 ........................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGAGTTTCCGT 1495 27 100.0 50 ........................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGGGTTTCCGTC T [1493] 1417 27 96.3 0 .......................G... | ========== ====== ====== ====== =========================== ================================================== ================== 6 27 99.4 47 CCCTCTCGGGGTTTTGGGTCTGACGAC # Left flank : CCCGTTCGCCTGCCTGCTCATCGGCCAACCCACCCTGCGGCGGCGGATGAAACTCGGCGTGCTCGCCGCGCTTGACCAGCGCATCGGACTCCGATATGCCATGCCGCCCATGACCGACACCAACACCGGCAGCTACCTACGCCACCACCTCAAGCTAGCCGGACGCGACGATGCCCTGTTCTCCGACGACGCCATCGGGTTGATCCACCAGACCAGCCGGGGCTACCCCCGCGCGGTCAACAACCTCGCCCTGCAAGCCCTCGTCGCCGCCTTCGCCGCCGACAAGGCCATCGTCGACGAATCCACCACCCGCACCGCCATCGCCGAAGTCACGGCAGACTGAACACCACACCGACACCCCGAACACCACCGACCCCGCCGGACATCTCCCGGCGGGGTCATTTCATGACCAAACGTCCTCACCGTCAACGCCGCCATCATGCTCATCCTGAATGCCGGTCAACAGACGCGGTGGCGACCCAGTCGTCGCGGTTTCCGTC # Right flank : ATGGAGCAGTAGCGTGGCTGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAAGTTTCCGTCCCCTCTCGTGGTTTTGGGTCTGACGACTGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCGCGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTAGAAGGCGATCACTGGAAGCACGGCGCTTGCGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGCCCGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCCGGTTTCCGTCCCCTCTCGGGGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCTCGGGGTTTTGGGTCTGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //