Array 1 213941-211470 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWN01000002.1 Salmonella enterica subsp. enterica strain TG14 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 213940 29 100.0 32 ............................. GCGACATTAAATTAGCGGTGTTGATGCTGGTG 213879 29 100.0 32 ............................. AAATACGACAGCGCACGTTAAAAAACGAAATT 213818 29 100.0 32 ............................. GCATTAATTTAAATAACGCAATTCAGTTAAAT 213757 29 100.0 32 ............................. TGGGAAAACCTGCTCAAAGAGGATATCGGGTC 213696 29 100.0 32 ............................. GCTATATCCCCTGGGGCGTGGCCGCAGCGGGC 213635 29 100.0 32 ............................. GGCGGCACGTTGTTACTGTTTCCCTCAGTGGT 213574 29 100.0 32 ............................. GAGCTTTGTTATATGAAAATTGGATTGATTGG 213513 29 100.0 32 ............................. CTGGCGGGCGCTGAATTTATCGCCGCCGACTA 213452 29 100.0 32 ............................. GCTATAGAGCGCCATCTCCGGGAGCTGACTAA 213391 29 100.0 32 ............................. ATCGCAACTTTTTATCGTGATATCGAGCAATC 213330 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 213269 29 100.0 32 ............................. CGAGAAATTTAAAAATGGAAAATACCTCCGTA 213208 29 100.0 32 ............................. AGTAACCCGTCCTCGTGCCAGCGGCGAGAGCG 213147 29 100.0 32 ............................. TGCGGGAGTACTGGGATCACGATTTCAGCACG 213086 29 100.0 32 ............................. AATACCTACGCGAACGAACAGTGGCTGAAAGG 213025 29 100.0 32 ............................. GAGATTTAAATGATCCACACGATTACGTTAAA 212964 29 100.0 32 ............................. GCCGCGTTGGTGGACGACGTCGGGACGATTTA 212903 29 100.0 32 ............................. GTATCAGGGCGTTATGTAAAAATCTTCTTTCA 212842 29 100.0 32 ............................. TTTCCGAAGACCTCGGCTGGCCCTTTGAAAGG 212781 29 100.0 32 ............................. AATAATATATCAGCCCCGATTCATCATTCGGG 212720 29 100.0 32 ............................. GAGCATGTTTTCGGCCGGAACCTGCCGCGTGT 212659 29 100.0 33 ............................. GTGGCGTTTAGTAAACAACCACACAACGAGCGG 212597 29 100.0 32 ............................. ACGTAGATATTTGAGGGGATTATGGCGAAAAA 212536 29 100.0 32 ............................. GCAAGCTGGGCAAATGCGGCCACGGCGGACCA 212475 29 100.0 32 ............................. CTGGACGGTCGGATCGTGGGCAATTATCCGTT 212414 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 212353 29 100.0 32 ............................. TGAAATAAATAATTCAAATCCAGTTCTTAGCG 212292 29 100.0 32 ............................. GCCTTCTTCCGTAAGCGCCAGCACGTGCACAA 212231 29 100.0 32 ............................. TCGGCCTGTGAATACTGATAACTGCGGCTGTT 212170 29 100.0 32 ............................. AGTCTCAGGAGCCACCTCCCCCGGAATCTGAA 212109 29 100.0 32 ............................. CTAAAAATGGATGTGGCGCCGTAGGGGTTTGC 212048 29 100.0 32 ............................. GAAATATTTTTCCTGACTCCTCCGACTGTTGT 211987 29 100.0 32 ............................. CAGTTAGCTAATCGTGCATGGCGTACCGAAAC 211926 29 100.0 32 ............................. GGCGGTGCCGCAGGCAGCAAACATTCAGATTG 211865 29 100.0 32 ............................. CTTGATAACGCGGCTGGAACCAGCACCGAACA 211804 29 100.0 32 ............................. AGCATTATTCAAAGAAAGCGCGATAGAAAAAA 211743 29 100.0 32 ............................. CCTCGGAAACGGCCAGCGCCGACAACGCCAGT 211682 29 100.0 32 ............................. TCTATTCAAGTAAAGGAAACGGGCTGACTGCA 211621 29 100.0 32 ............................. TTAATGCCGCTGTAAGCTGTGCCGGTGTGAAA 211560 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 211499 29 96.6 0 ............T................ | A [211472] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 231382-230072 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWN01000002.1 Salmonella enterica subsp. enterica strain TG14 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 231381 29 96.6 32 .............T............... CAGTATTTCGGTATGGCAAGCAGTAGCGCGAA 231320 29 96.6 32 .............T............... CTCATCAGATAAACCCCTTTGATTTATCCCGG 231259 29 96.6 32 .............T............... CCGGCGCTTTCAATATTTGAACACATTCGGTG 231198 29 100.0 32 ............................. TCAAAATCCTAAAGTGTCAATTTTTAGCCCAG 231137 29 100.0 32 ............................. GGTCGCTATTTCCTGCCCCCTCGGTGGTCGAG 231076 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 231015 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 230954 29 100.0 32 ............................. TGATCTGGCTGAGTTCTCCAGTGACGACAAAA 230893 29 100.0 33 ............................. GCAACCGGTGCTGAACCGGTGGCGGCTGTCAGC 230831 29 100.0 32 ............................. CGACTCATCTCCCTGGTGTGGCTGGCAGTACA 230770 29 96.6 32 .............T............... CTCCGCGTTACGCCGATCGCGCACATTCCAGC 230709 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 230648 29 100.0 32 ............................. CCCCGGTTGGCTTCGACAAAACTGCAATTGCA 230587 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 230526 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 230465 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 230404 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 230343 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 230282 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 230221 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 230160 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 230099 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //