Array 1 170854-166637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALCQ010000004.1 Rubrivivax sp. JA1026 4_length=330791_depth=1.02x, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 170853 36 100.0 37 .................................... GGTGCGCGTACATGATGCCCGTCTGATCCGACGAGCC 170780 36 100.0 37 .................................... AGCGCCGCAATCTGCGCAGCGGTCAGACGCTCTTGGC 170707 36 100.0 37 .................................... AGCGCATCGCCGATGGCTTTCTTGTCCAGCGCAGGCG 170634 36 100.0 36 .................................... GTCTGGTCGCTGAAAACCTCGCGCACCGTCTTTGTG 170562 36 100.0 35 .................................... CGTCTCGGTCACGGCATCACTCCAGCCAGCGCGAT 170491 36 100.0 35 .................................... AGTGCCTGCTCGGTGCTGCCGCCCGGCTTGGCGTC 170420 36 100.0 37 .................................... GAGTACTTGCGCAGGAACATCTCGACGCTGTGCCCGA 170347 36 100.0 37 .................................... AAGCCGACGAGTGGCGGGCGCGGCGTTGGCGTCCGCT 170274 36 100.0 36 .................................... AACGCCACGTACCCGACCAAGCTGGCCGAGCAGCGC 170202 36 100.0 35 .................................... GCCGTCAACACCGGCGCCCGCGACGAGAACGTCTG 170131 36 100.0 38 .................................... GCGGCGTATGAGCGGCGAGTCGTGGCGGCGCATGAGCA 170057 36 100.0 36 .................................... TGCGCGCTCTTCGAGTTGAAGCGCGGCGCCAGGCCG 169985 36 100.0 36 .................................... CGCGTGGTGCTCAGGGACGCCGCACTTGCCCCCGAG 169913 36 100.0 38 .................................... CACGCGTCGATCAGCGCGACGCCGGTGCGAGTGCTAGT 169839 36 100.0 36 .................................... CCAGGCGCTCACGTACACGTTCTTGAAGTCCTCCCA 169767 36 100.0 37 .................................... ATCTTGGCAAGTTCGTCAAGCAGCTCGTGGGCCTCAA 169694 36 100.0 35 .................................... TCACGCTGAATGACCAGAGGCTCCTGCTCCAGCTC 169623 36 100.0 36 .................................... AGCTTGACGACGGGGGCAGACAGCGCCGTCGATCCG 169551 36 100.0 37 .................................... CAGCGCGCCGCCTCCTTGTTGTTGATCTTGAGGACGA 169478 36 100.0 35 .................................... TTCACGCCGAAGATCGAATTCGTGCCGATCTTCAC 169407 36 100.0 38 .................................... GGCTGTTGCTGCAGAGCGTGCGTCGCACGTACCTGCCG 169333 36 100.0 35 .................................... GAGGGCCAGCGCCTGGGCTACGTGTGCCGCTTCGA 169262 36 100.0 37 .................................... GTCTCCCAGCACGTCGGGTCGGTGCACAGGTCGCGCT 169189 36 100.0 38 .................................... TCGGCGCTCTCGGCACCCAGCACGTAGATCACGAAGAT 169115 36 100.0 38 .................................... CGGGTAGGCGTGACAGAGCTGGAGTAGCGCACCAGCTC 169041 36 100.0 35 .................................... ACGCCGTCTATGGCGTTTTCCTGCGACCGGATCGC 168970 36 97.2 35 ..........T......................... GTGACCGTGGCGCCGGGGAAGGTGCGCTCGATGTC 168899 36 100.0 37 .................................... TTGCCGCCGGTGATGCCGCGCCACGTCCAGCGTTCCG 168826 36 100.0 36 .................................... TGCAGGATGCCGATCGCGAACTCGCCGGCGCCGGCG 168754 36 100.0 35 .................................... TCAGTGGTTCTCACCCGCGACGACAGATGACCCTC 168683 36 100.0 36 .................................... TGGTTGGGGTGGAAGGGCTGGAGCGGCGGGGCGGGG 168611 36 100.0 36 .................................... CTCGTGCCCGTCTTCGTGACGCAGCTTGCAGGTGAC 168539 36 100.0 35 .................................... GATGCGGCCGCTGACGCGCTTTCATCGTGGGCGCG 168468 36 100.0 35 .................................... TACGGCTCGGCGCAGGCGCTGATGACGCTGCTGCA 168397 36 100.0 36 .................................... TGCGGCCTGGTCACCGACCCCACGTGCGGCCACGTC 168325 36 100.0 35 .................................... TCGGCCAGCGTCCAGTCGACGGACGGCGCAGCCTC 168254 36 100.0 35 .................................... TGGACCTCGCGGGCGCCGGCGGCCAGGGCGTCGCG 168183 36 100.0 37 .................................... GTGTCACGATCCTGCAGACGGGCGTCAACCGATCGCG 168110 36 100.0 37 .................................... TTCTCGCCCCGGTGAGTGCCGCCGGTAAAGCCGCGCC 168037 36 100.0 39 .................................... GATCTGCACCTCGTGGTCGGTCGGTAGCCGCAGCGTCGC 167962 36 100.0 35 .................................... CCGCGCAGGTCGGCCATGGCCTCGATCAGCTGCCG 167891 36 100.0 35 .................................... TCGACGGTGCGCAGGCCGCCCAGGCCCAGCATGCC 167820 36 100.0 36 .................................... GTCATGATCACGCATCCAGTGAAAGCTGACCCTGCC 167748 36 100.0 35 .................................... GTCACGGTCTTCTGCGCGTTGACGAACGCACTGCG 167677 36 100.0 36 .................................... GGCAAGGACGCCTTCCAGATCTACGCGACCGAGCGT 167605 36 100.0 36 .................................... ATGGCGTCTCCACGGCGCGCAGCGCCTTGTCTACCG 167533 36 100.0 35 .................................... ATCTCGTGCACCTGGCCGCCCTGCACCGCGACGTC 167462 36 100.0 35 .................................... CTTGCGCGCGGTGTAGAGCCGCAGCCGTGGCGCGG 167391 36 100.0 36 .................................... GTGATGCACGACCCGCGCCCGCTGCCCTTCGTGCGT 167319 36 100.0 35 .................................... GCCGTGAACGCGGCGCTTTGCAGCAGCACGCGCAG 167248 36 100.0 36 .................................... ATCTCACCTTCGAGACGGACCCTCTCGGCCATGACG 167176 36 100.0 35 .................................... TTGCAGACGTTCCCGCTGATCACCAGCGGCACCGA 167105 36 100.0 36 .................................... GCGGCCGGCAGCGAGACGATGCGCAGCGTCTTTTGG 167033 36 100.0 37 .................................... GCAAAGGACAGCCACAAGCGGGTGCGCGAGAGCTGGC 166960 36 100.0 37 .................................... GAGAAGGCCATGGAGAAGGCCAGCAAGGCGACCGAGA 166887 36 100.0 36 .................................... GACACGACGCTCAAGACCATCCAGTCGCTCGTGCCG 166815 36 100.0 36 .................................... GGCACGCACTCCCGCACCGCGCCGCGCGACCAGATC 166743 36 97.2 36 ................T................... AACGGTGCCATCGTGCAGCGGCTGCATTTCGAATAC 166671 35 75.0 0 ...-............C......AT.C.GA....CT | ========== ====== ====== ====== ==================================== ======================================= ================== 59 36 99.5 36 GTCATCCGAGGCGCTCAGCCTCGGCCTCATTGAAGC # Left flank : CCTGATCCTCGTGACCTACGACATCGCCGACGAACGGCGCTGGCGCGCGGTGTTCAAGCTGATGAACGGCTTCGGCGAGTGGATGCAGTTGTCGGTGTTCCAGTGCCGGCTTGGTGCCATGCGTCGTGCCGAACTGATGGCGCGCATCACCGACACCATCGCGCCGTCCGAGGATCACGTGCTGATCGTCGACCTCGGCCCCGCCGACCGCGTCGAGCCGCGTGTGCAGAGCCTCGGCAAGCGCAGCTTCGTGCCGATCGAGCGCGTGCCGACGATCGTCTGATCGCGGCATGACGGCCTGCCGCCGAGCCGCGAGCGCTGTGGTGCTGGCGGCCGCCCCAGGGGAGCGCTCGCGCAGCGCAAAGCTCAGCGCCGACAAGCACTTGCATTGCCCGACCCTGGACCCTGGTGCGTGCATCGCCGCTCGCCAGGCCATGTCTCCGCCAGCGCTCGCAAACGCGGGCCAAAATCCGCTGCTGGCGGGCGTTCTGCGAGGGCCT # Right flank : TTGGAGTGCTTGTCGATGTTGAGCCGCGCGCCGCCCGCACCATCCTCCAGACCCCGGCCCAGCGCATCGTCGACGAAGCCGCGGCCCTGACGCGGCGCACCCGTTGATCCGTCCGCACTTCGCCTCCCCGCTCCTAGAATCCCCCCACCTCGCGCAGCACGAGCCCCCGGGCGATCAGACCGGTTGCGTTTCGGACGTTGCAGGCCAAGGGGCGCGAGGTGCCTCGCGCTGGCGCTGGTGGCGTTGCCTACTGCAGCTTGTGCCCCGCCAGCCGCTTCGGGTCGGGGATGCGGATCTCGCGCTTGTCGATGACGATCAGCCCGGCGGCTTCCAGCTCGTGCAGCACGCGCGAGAAGTACTCGGGGGTCAGCGACAGCCGCGACGCGATCGTCGCCTTGCTGACCGGCAGGCTCACGCGCAGGTCGCGGCGCTGGGCCTGGGCGGCCGGCGTCACGCCGGCGTCGGCCAGCGAGAACGCGGCGGCGTCCTCGGCCTCCTCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCGAGGCGCTCAGCCTCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.70,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //