Array 1 76826-76677 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCWD01000003.1 Cronobacter sakazakii strain MOD1-J172 csakJor172_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76825 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76765 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76704 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 201180-203892 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCWD01000002.1 Cronobacter sakazakii strain MOD1-J172 csakJor172_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201180 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 201241 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 201302 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 201363 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 201424 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 201485 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 201546 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 201607 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 201668 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 201729 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 201790 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 201851 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 201912 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 201973 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 202034 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 202095 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 202156 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 202217 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 202278 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 202339 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 202400 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 202461 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 202522 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 202583 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 202644 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 202705 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 202766 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 202827 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 202888 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 202949 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 203010 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 203071 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 203132 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 203193 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 203254 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 203315 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 203376 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 203437 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 203498 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 203559 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 203620 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 203681 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 203742 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 203803 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 203864 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230113-231179 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCWD01000002.1 Cronobacter sakazakii strain MOD1-J172 csakJor172_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230113 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 230174 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 230235 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 230296 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 230357 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 230418 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 230479 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 230540 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 230601 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 230662 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 230723 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 230784 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 230845 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 230906 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 230967 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 231029 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 231090 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 231151 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //