Array 1 517768-517914 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000001.1 Streptomyces sp. Root63 contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================ ================== 517768 23 100.0 30 ....................... AGTGTGCCGGGCCGTCCGGCGCTTCGTTCT 517821 23 100.0 48 ....................... GAGATGCAGGCCCGACGTGGCTGCCGGGCCGCCCCGCGCAACGGTTCC 517892 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================================ ================== 3 23 100.0 40 GTCCTCAAGCGCCGGACGGGCTG # Left flank : CGGGCAACAAGTCCGAGCTGGCGGTCGGCTACTCCACGCTGTACGGGGACGCGGTCGGGGCGTACGGGCCGATCAAGGACGTCTACAAGTCGTCGGTCTTCCGGCTGGCGAAGTGGCGCAACCGGGCCGCCGAGGAGCGGGGGCAGACTCCGCCGATCCCGGAGGCCTCGATCACGAAGCCGCCGAGCGCGGAGCTGCGGCCGGGGCAGGTCGACACGGACTCGCTGCCGGACTACGACGTCCTGGACGCGATCCTGGAGATGTACGTCGACCGGGACCAGGGTCTCGACGCCATCGTGGCGGCCGGGTTCGACGCGGAGCTGGTGGCGAAGACGCTGCGGATGGTGGACGCGGCCGAGTACAAGCGGCGGCAGTATCCGCCGGGGACGAAGATCTCGCCCAAGGGGTTCGGGAAGGACCGGCGGCTGCCGATCACGAACCGCTGGCGCGAGTCGTCGTAGCGGGTGGGCGGTTACCGGGGGCGTCCGGTGGCCGCCTTC # Right flank : GGAGTGGGTGTCGGAGTGGGGGCTCGACGGGCTTGTTGCCGTCGGTTCGCGGGGCGAGGTGCGGGGGCCTCCTGCCACCACGCGGGATTTCGGTGACGGGTCCCGGTCCAGGTGGCCCGCTGTCACCGCCACTGCCAGGCCCGCCACCGCGAGGACCGCGCCGACCAGGGCCGGGGACGTCCAGCCCCAGCCCGCCGCGATGGCCACGCCGCCCAGCCACGCGCCGCCCGCGTTGGCCAGGTTGAACGCGGAGTGGTTGGAGGCGGAGGCCAGCGTCGGGGCGTCCTTCGCCTTGTTCATCACCAGCATCTGGAGCGGCGTCGTCGTCATGAACCCCACGCCGCCCAGCAGCACCACCATCACCAGCGCCGCCCACGGGACGTGCACCGTGAACGGGAAGACCACCAGGACCACCGCGAGCGCGCCGAGCGATCCGTACAGGGTCGGGCGCAGCGCCCGGTCCGTGAGGGGGCCGGCGGCCAGGGCGCCCAGGGTCATCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCAAGCGCCGGACGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 580437-579569 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000018.1 Streptomyces sp. Root63 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 580436 28 79.3 40 AA.....T..........-......C..A AACGCATGAGGTATGGGTCCCTACCCTTCTCCGTCGTGGA A [580413] 580367 28 79.3 68 ..-.G.......T......G..CC..... GTGTTGCGCGACACACTGCGCGGCGCGTTGCCTCGACGTCCGTTCCTTGAAACGTGAAGAGCGTGATT G [580363] 580270 29 89.7 32 ..TG..C...................... GACGTCCTCAAGGAGGACTGGGCGAAGGGCAT TA [580260] 580207 29 100.0 32 ............................. CAGTACTGCACGTGCCGCATCCGCTTGATGAC 580146 29 96.6 32 .................T........... GTGTTCCGAAACGGCCCGTACGTCATGGGTTT 580085 29 100.0 32 ............................. CTGGGGCGTCCGTGGAAGACGGACAAGCTGCG 580024 29 96.6 32 .......T..................... CCGTGCTTCCGGATCCCGTGCCCCGACCCGGT 579963 29 100.0 32 ............................. ATGGAAAGCAAGGGGACCGCCGAGGTCGGCCT 579902 29 100.0 32 ............................. GACCTCCTGCCCACCGTCCAGGGGTTCGTGAC 579841 29 100.0 32 ............................. TACAGGACGGGGACGTTGCCATGCACCGCCAG 579780 29 96.6 32 .........................T... GCGCTCACGGACGCCCGCGCCGAGGCCGGGAA 579719 29 93.1 32 ..........T..............T... AACGACGTCATGGACGGCATCCGCACCGTCTC 579658 29 96.6 32 ..................A.......... ACGTGCTGGAGGGTGTCGGTGCCCCTGAGGCC 579597 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================================================== ================== 14 29 94.8 35 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : TCACGGGATTGGCCTTCCGAAGAACGCAGCAGAAGAAGCTGTCTCGCAATGCTTCGTCGCCTTGCTGCATCTTCGTAAAAACCGGCGCGGGGGAATTCGGACAACCGCAGGTACACCAAGTTCGTGGTCCCGTAGAGTACTTACTGCTGCACGCCTCTCTGGGAGGTGCGCGGAATCCCATTGGCTCTTCAGGCGACAGCACATCGAGATGAACGCACGACCCTCTCGAGGGATGTGGCGCAACCTCGACCGTGTCTGCGCTCTGGAGAAGCAGTGTCTCGGTTCCTGCGGAAGTTCGTTCTGCGACGCGAGGTCCTCCTCGAGGTATCGCGCGTGGTGGTCAGCACGGTACTCCGTGTCCTGATCAACGAACTCGTCAGCTGGCTCTTCTGAGCCAACGGCGACGGACCCCAGAGGTCCGTCGCCTCCTACATGGCGAGGATGTCCCGCTGGCTTCCGATGTTTCCCCATTACGGCTCTGTCTTCCCGCGCGTCCAGCA # Right flank : CCTAGAACAACGAACAGGCACACAGGGCAGAGGCGGTAGAGGGGAACGATGCTCTTCTCGAAGATGGACAGGGGTGGATGCCCTTTACGTTACGAGGCGGGCCCGTACTCGACGGTCGAGTCGGCGCACTGTTCGGCGAGGTCGAGGAGGGCAGCCTGCTCGGTCTGGTCCGCGTTGAGGTTCCAGCGGAGCTTCGTGGCGGTCCAGTCGACCAGGTACGTGCACGTCGCGGACTCGGCGGGCGGCATCCACTGGGCCGGGTCCTTATCGGCCTTCGACCGGTTGGTCTTCGCGGTCACCGCGACCAGCGACCGCTCGGCGTCGAGGTCGTTGGCGTAGGCCTCGCGGCGCTCGGGCGTCCAGTCGTGGGCGCCGACTGGCGGGGAGCGTCATTCCAGAGGTGCGGTATTCGGTGCTGCCCATGGGTCGTCGTACACGTGGCCGTTGTCGGGGGAGGTGGATTCGTGCTGCTTTGCCCGGGCTCCTCGTTCCTCCTCCCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 588996-589455 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000018.1 Streptomyces sp. Root63 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 588996 29 58.6 33 AAAGCTC....A...A...GC.......C GCCGGCGGCACGGTCAGCAAGGAGTTCCACGGG T [589005] 589059 29 82.8 32 .C...A.....AG............C... TTCGTCACCACTAACTACACCGCGCTGTTCGC 589120 29 82.8 32 C.........T.AA.........A..... ACGGAGGCGGCGCTGTTCGCGGCGTCGCTGCT 589181 29 100.0 32 ............................. GGCAAGCTTGTCGACCGAATGCGGGAAGCCGG 589242 29 86.2 32 ....CT..........G......A..... CCGATGTGCAATCAGGAGGTGGGCGCCGATGG 589303 29 96.6 31 ....G........................ GGGGAGCGCCCGATCGAGCGCGTCTCCCCAG CGG [589315] 589366 29 96.6 32 T............................ TCGAGCAGGTCCTCGGGCCCGCCGTCCGAGCG 589427 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 88.0 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : AGGCGGGCTAGAGCCGTCGCATATCACCGCCCACCCGCTCGCCACTGTACGAAACCAACAGGGTTCCAAGGGCCCTGTTGCAAAACAGAGAATTCAGCATGCCCGCACGCAATTCGATGGGACGGCCCGAATCCTCGACGCCGAACTGCTTCGCGAAAAGATCGCTACCGGCATCGGGCGCGGCAAAGCATACGGATGCGGACTTCTCAGTATTGCTCCCATTCGATGAATTCAACCGAGTGCCGACCGAAGCCGTGCCGAGCTGCTGGTCACAGCGCTCCTACACGGCAACGACCTCGGCATTTCCTCCATGGCCACCCTTGCGCGGGAGTAAGAATAAGCCACCCGCCAGAGTATTATACGGAAGGTGGCGTTGTCGTCCGCGAGGGAAGTTATGTGAACCGCTCAGCGTGAGTTATCTGCGCGACTACCTCCGGTCAAATTCTGCGCGCACGGAAAGCAGCGGAATGAAGCCGAGCTTCGTAAGGCGAGGTAGCAAA # Right flank : GGAGAAGCTGGTCACCGGGCAGTCCTCCTCGGGTTGCGGGCCGCCGTGCCGTACACAGCGGCCCAGGAGCGTTGGTTCGGCAGGTGGCACACGCCGTCGATCTAGCGGGACGTCACGGTCTGGGTGAACAGGGGGACGTGAAATTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGCACGATGGCTAAGGTCCCCGAGCGGTTCGGTGTGGATCCCGAGCAGGCCGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTGCACCTCGCACTCCTGGAGGACACCGTCATCCCACACCTGGGGGCAGGTGGGGCAGCCGACTGGACTGCTGAGTACCAGCTGCGGCTCCTCGCCCCCCTACGTCGAGCACAAGGACTACC # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 589999-591671 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000018.1 Streptomyces sp. Root63 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 589999 29 96.6 32 ..........................T.. TTCGACCCGCACTCCGGGAAAGTCCTGGAGGA 590060 29 93.1 32 ..A...............C.......... GAGTCCCCGGTCGATGAGCGGGTACGGAAGCG 590121 29 86.2 32 .AA.......T.T................ GGGGTCACCAGGCCGTGGTGGTTGCCGCCGGC 590182 29 96.6 32 .....T....................... GTGCGGTGAATGCGGCACTCAGTGGAGAGCAG 590243 29 100.0 32 ............................. GGGGACGCCAACGCGGCCACGCCCGGCGCGTC 590304 29 100.0 32 ............................. TTGTTCGGCCGCGTCCCCGGGTGCCGGACGTA 590365 29 96.6 32 ..A.......................... CCCAACCGCAAGGTCATCCGCCTCCAGCAGAT 590426 29 100.0 32 ............................. GTGACCCAGCTCGGCACCCCCGGCGCCGGCGT 590487 29 96.6 32 ................T............ GGGGCCCGGTGACCACCCAGCCCGAGCGCATC 590548 29 100.0 32 ............................. TCGCTCAAGGATGTGGGGATCACCCCGCCCGA 590609 29 100.0 32 ............................. CAGCCCTGGCAGGCGGCTCGGGGTACGTACAG 590670 29 100.0 32 ............................. ACGCCTAGTTGACCGCGACCATGCTGTGGAAG 590731 29 93.1 32 ..C.....................G.... ACGATGGCGGCTCGTGCGGCCCGGAGGGCGGG 590792 29 96.6 32 ..C.......................... CTCACCGGTACCGTGGACGTGCCCGTGGTCGG 590853 29 100.0 32 ............................. TCGACTTGCGCGGGCTAGTCGTCGCCCAGGAG 590914 29 96.6 32 ..T.......................... GCGCCGTCCGCGAGGCCCCAGACCTCGTGGAG 590975 29 100.0 32 ............................. TTGTACGCGACGTCGGAGTAGTTCTCCTTCCG 591036 29 100.0 32 ............................. GCGGTGATGGTGCCCGTGACGAACCCGTTGGC 591097 29 100.0 32 ............................. CACTTCTACGACAAGGTCCTCGTACCGCTGCG 591158 29 96.6 32 .....................A....... GCGCGACGTCTCCGCCGCGCCCTCGTCCGCCC 591219 29 96.6 32 C............................ TTGATCAGTTGTTGTTATCACTCCTTCGAGGG 591280 29 100.0 32 ............................. GTGACCCGGTACGCGTCCTGACGACGGCGTGA 591341 29 100.0 32 ............................. GTCCGGCAGGGGTTCCTCACCATGTCCCCGTC 591402 29 100.0 32 ............................. GGCGGTGATGATGCGGCTGCCGTGCTCGTGGC 591463 29 100.0 31 ............................. TCCATCGCGGGCGGTTGCCCGCCCTCCTCTT 591523 29 100.0 32 ............................. TGACGCAGTACACCGTCTCCCCAGTCCACAGG 591584 27 86.2 32 ........--.A........A........ CAGGAGGGCACCCGCCGACGTCGGCGGAGGCC 591643 29 93.1 0 .................A..........T | ========== ====== ====== ====== ============================= ================================ ================== 28 29 97.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGTGCCGTACACAGCGGCCCAGGAGCGTTGGTTCGGCAGGTGGCACACGCCGTCGATCTAGCGGGACGTCACGGTCTGGGTGAACAGGGGGACGTGAAATTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGCACGATGGCTAAGGTCCCCGAGCGGTTCGGTGTGGATCCCGAGCAGGCCGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTGCACCTCGCACTCCTGGAGGACACCGTCATCCCACACCTGGGGGCAGGTGGGGCAGCCGACTGGACTGCTGAGTACCAGCTGCGGCTCCTCGCCCCCCTACGTCGAGCACAAGGACTACCCGCACGACTAGCGCTCGACGGCAAGTCCCCTGCCAGGGTCTCCC # Right flank : TGAGCGCTTAGGGCGCCCCGCCCTCGCAGAAATCGGGGGAGCCGAAGGCATGTCTGGAGGCCGTAGAATCCACGATCGCGCGACACTGCCCATGAAGGAGCACACCGAGCCATGCGCACAGCCACAGCGGCGATCACCGCGTTATCCGCAACCCTACTGCTCACCGCCTGCGGCGGCAGCAGCCCTGAGTCGAAGGCCGAAACCAGCGCCACGGCCGCGCCCACTATCACCCAGGCCCCGGCGATCACTCCATACATGGACGGTTACGCCCACGGTCAGGAACGTCGCACCGACCCGGAGTTCAAGAGCACCGAGAAGGCCATCATCTTCGACCCGGTCACCGGGCAGCCCAAGGCGAATCCGAAGGACGACACCCTCACGGTTGCCCTGCGGGTCGCAAGCCACTGTCGTGACTGGTCACAGCAGGAGTACACCGACTCTTCCGACCAAGACGCCTACTTCGAAGGATGTCGCGCCGGCATCGACGACAGGCCGCCCAC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 592358-593116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000018.1 Streptomyces sp. Root63 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 592358 29 93.1 31 .......TT.................... CCGACCCCGCGGAGGAACCCGCCCGGCGTGA 592418 29 100.0 32 ............................. GCCAAGGGCACCCCCGTCACCTACGCCGGGGT 592479 29 93.1 32 .G...............A........... ACGCGGTCCTGGCCCAGCGCTCCCTCTACGCC 592540 29 96.6 32 .G........................... TCCTGCTGGGTCATGGAGTGCTGGGCCTTGGA 592601 29 100.0 32 ............................. TAGCCCTCGTAGCCGAGCCGGCCGATCACACC 592662 29 100.0 32 ............................. CCGACGCCCAGGAGCGGCTGGAGCAGGCCCTG 592723 29 93.1 32 ....G........C............... ACGTCCTTGATGATCCCGCCGATGTCGGCCAG 592784 27 93.1 32 ............--............... GCGTCCATCAGGTCGGCCGGACGCTGGCGCTC 592843 29 100.0 32 ............................. CACTCTGCGGCGACAGGGGCGAGAGCCCCACT 592904 29 96.6 32 .......T..................... AAGCAGTTCCTCAGCTTCGGGTCCGGGTCGGT 592965 29 100.0 32 ............................. TGGCGGACGGTCCCCTCGACGCGCACCACGGG 593026 29 100.0 32 ............................. ACGAACTCGGCGTCGCGCTCCTGAGAGTCGTC 593087 29 82.8 0 ...........A.......G.A..CT... | T [593090] ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.0 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : AGTCGAAGGCCGAAACCAGCGCCACGGCCGCGCCCACTATCACCCAGGCCCCGGCGATCACTCCATACATGGACGGTTACGCCCACGGTCAGGAACGTCGCACCGACCCGGAGTTCAAGAGCACCGAGAAGGCCATCATCTTCGACCCGGTCACCGGGCAGCCCAAGGCGAATCCGAAGGACGACACCCTCACGGTTGCCCTGCGGGTCGCAAGCCACTGTCGTGACTGGTCACAGCAGGAGTACACCGACTCTTCCGACCAAGACGCCTACTTCGAAGGATGTCGCGCCGGCATCGACGACAGGCCGCCCACCAAATCCTAACGAAGATGATGTAGCCGACGGCGAAATCGGCGCCATAAAGCACGTTCTGCCCGCTATGAGCACGTAACGCGGTCATGACCGGGCTTCTTGAGGCGTCTGAAGCAGATCAGGCAGCAGGCCAGGGAGACTTTGACGTTCGGGCGGCCCTTGCGCGAGGTGACAGGCCATCAGTTTATC # Right flank : GGCCGCTGGATCAACGGGGAACTGTGTCCTGGCGGTCGCCGGTAAGGACTTCGCTGCAGGCGAGCCGGGAGTGGTCGTCGACGGTGGAGTGGACGTAGTAGTAACCGATCACCGGCGAGGCGGGCACGCCCACGACCGGACCGATGCGGGCCGGTCCCAGCTTGCGGTCCCGACTCAGCGGCAGACCTGCGCCTCGACTTCGGCGGATGTGTCCGATGCGCGGTCCTGGCAAGCCAGCTGGAGCGGTCATGCAGGCTCTCGGCGAGGCGGCTGGGCGATCAGCCGGACGAACTGGGCACCCCGTCTCCCTCAGCAACTCCGCCTGGACCGGTTTCCGGCATCCGGGCGACAGTCAGCCATCATCGCCTGACTTCCAATCAGGAAAGTCAGCAAATGGTCAGCATCGATCCGATTGAACCCTGACACACAAGCTCGAACACGAGACTCGATGCGCCTTCCTTCACATCCAGCAGACCTTCGGACCCCGGCCACAGGGCAGA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6152-6001 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000007.1 Streptomyces sp. Root63 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6151 29 100.0 32 ............................. ACGCGCGCCGAGGCCGTCGTCCACGCCCTGGC 6090 29 100.0 32 ............................. ATTTCGCGCAGGGCTCGGTCAAGCTGGTATTG 6029 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAACTGCCGGTAGGCGTCGGGCAGGGCGATGTCGTGCTCGGCCTCGAACGCAGCGACGCGTGCCTCTGCCAGCTTCGGACCGGGACGGAACTCGTGTTGTTCTTCTCCGAAGGAGTGGCTGCGCAGCGGTTGGAACGGGATCGCGGCCAGCTTGCGACGCAGGCGGGGTATGCGGGGATCCATGGTGCATCTTCTCTCGTCCCTGTCACCCTATGGGTGGCTGTAGCCAGCTGGCCAGAAGAACTCTCTTCCCCAGGAGAGCGAAGCCGGCCCGGCCGAGCATCTGGCGCTCGATCAGCTTCCCGAGGTCCCGCCCGCCCGAAAAACGTCACTCCGCGTGATGGTTCACGGAATGTGTGCCAGAACCGCTTGAAGTGAACGAAGCCAGCTGGGGATAGCCTTGTCGTCACGGCAGGAGAGAGCTGATGGTTGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACGCTTTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : GTTAGGGGGCCGCCAGACGTGCCCGCTCTGCTCATACAGCTTCGTCAGCGCCGCAAATTCGCCTCGGCGGTGGGGGCTTTTCGTCATGCCCGGAGTCAGCCGAGGGAGTCGATGGCCTTCACGATCAGGGCGCGCGCCGCCGCGCCGTACACGGCCATGCCGCGCAGTTGCTCGAACGCCTTGAGGTAGAGACCGATCTCACCGGGCTGGGTGATGTTGACCTGCGCGGAGAGCAGTTCGACCGAGACGAGGGTGTCGTCGTAGACGTGGAAGGTCTCCTGCGGCCATAGCACCCGTTCCCGGGCGGCCATAGGAATGATGCCCAGCGACACGGTCGGCAGCGCCCCGACGGTCAGCAGGTGGCCGAGCTGCGCGGCTACCGCGTCGGCCGAACCGAGCTGGAAGTACAGCACCGACTCCTCGATGAGAAGCACGACTCGGTGCCCCGGCTCCCGGATGATCCGGGACCTCTCGACCCGCGCCGCAGCCGCCTCGGGCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37285-39047 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000007.1 Streptomyces sp. Root63 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 37285 29 100.0 32 ............................. CGGTACGTGAACAAGACGCCGCGCAGGAAGTT 37346 29 100.0 32 ............................. CACCTAAAGTGTCCGAGCCGAGGGTGGCCGTC 37407 29 96.6 32 ............................A CAGGAAGGGCCCCCGGATCACCAGGGGCCCCA 37468 29 100.0 32 ............................. TGGCCGTACTGCGCACCAACGACCTGGGGAAG 37529 29 100.0 32 ............................. GATGCACACGTACGCGCACATCGTTTCGTGGA 37590 29 100.0 32 ............................. GGCGGCTGCATGGGGGCGAGGTCCAGCACGAA 37651 29 96.6 32 ............................A ACCCTCATCAGCGGGCGGGTCCGGACCTCGGT 37712 29 100.0 32 ............................. AACATCATCCCGGGCGCCGAGGCCGCCGGGAT 37773 29 100.0 32 ............................. CGTTCGATGCCACGCCGGGGCCGCTGACAGAG 37834 29 96.6 32 ........A.................... GTCGCGGGCGAGTCCGCCGTCGTCTTCCGGCT 37895 29 96.6 32 ............................T GAGTCGGTCTCGAAGTTCCACGTGGTCAGTCA 37956 29 100.0 32 ............................. GCGCACGCGTGTCGCGCACGCGCGAGGAGACG 38017 29 100.0 32 ............................. GGGTTGCCGATCAGGTCGCTCAACAGGTTGCG 38078 29 100.0 32 ............................. GCCCGCCCCGAGCGCCCGGCCGGACCGGTCCG 38139 29 100.0 32 ............................. GATCGGCGGATCCGGCTCCCACACCCTGACGA 38200 29 96.6 32 ........A.................... GGCACGGCAGCGTGCTCCGCTCCGTCGTACGC 38261 29 100.0 32 ............................. GTGCCCACGGCACGTCGCGGTTGTGGGTCTCC 38322 29 100.0 32 ............................. CGTCCGTCGCCTCCGCCTCCGCGCTCCACCCG 38383 29 100.0 32 ............................. AAGCTGATCGCGGCGGGCCAGTCCCGCCTCAA 38444 29 93.1 32 ..............G..A........... TCGGCTCAGGGCATCATGCGCCGGCCCGACTG 38505 29 100.0 32 ............................. ACCCCGTCCATGCTGGGCTGGTCGACGTCGTT 38566 29 96.6 32 .......T..................... ACGGGCCGGGTCCGGCACCCGGTGTTCGGGAA 38627 29 100.0 32 ............................. GTCGAGACCACGGTCTGACGTCAGCTCACCGA 38688 29 96.6 32 ............................G AAGTCCGGCACGGACGTCGAGGCCGAGGGCGA 38749 29 93.1 31 ...........G.............C... GTCTGCAATCCCGGATGGTTGTACGGACCGA 38809 29 82.8 181 .AA....A...G................A CGGCGGGGTCCGGAGCCGGAGAGCGCGGCCGTCTGCTCGCTTACGGGGCTCAAGTAGTAGCAATTCTCGCTGATTGCGCACTGAAGGTGAGCGGAAGTGAGCAGGATGCGCCTAATGGTGGGCAAGGTGGGCTTCTGCAACACGGATGGCATAGATGATCAGTTACATCTCTCACTACTCA 39019 29 69.0 0 A..G....T...TAGC.A......A.... | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 27 29 96.8 38 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TTGCCTTCCCGATGTCATGCACCCCAGACAGCCACACCACCAGTTGCCGGGCATCCTCCACCCCGCCGGGCAACGGCCCCGCGATCACATCCCGAACCTGCTCAGGGAGCCACTCGTCCCACAACAGCCCCGCCACAGCGGCGCTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCCTCCGTATCCCGGTCGTGCTTCGCCCACACTCGCCGAACAGCACCCTGCAGCCGCCCCCCAAGGCCCGAACAGGCCCCACCCTCATCAGCCATGTCAGATGAATACAGGCAAACAACTGAACAACACGCCCTGATCAGAAAATCTGATGCTTTTCGATCGACAACATCACTTCAACCGATAACTCGCCGTAAGATCCGCCCGACGTAATCCGCGACCCAGCACAACAGGCAACAGGAAGATGCCGAAATAACCTATATGTCGAAATCGGTGAAAGTGTGTGAGATCTCGGCCCTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : CACGGAGGGCATCGCAAGTGCTTGCTCCCTGCGCACGCAGGGGTTTCCGAAGTTCAGCCGTTCCTCGACAGCCCGACATCATCAGCAAGCATGCGTGGACGCGCCACAGGCAGGCATGATGCTGAGTAGGTCAGTCGCTGAGATGGACGGAAGCAGGCTTCATGACGAGTGCACCGGACTACAGCCAAGGCGTTGATGCCGAACGCGCGTTGAAGTTCGCTGTTCAGCGCATCCGTGGAGACCGTGTCCAAATCATCGAGGGGATCATCGAGCCTGTGTCACCGACCTGGGATCACGAGCGCGCTGCGAAGCTCGTCCGTCGGCAGATCGAAGATCGGGTAGATGATCTTGGGTGTGTCGAAGGCTCTGGAAACTTGGATCTCCCGGGGTCGTCCAACTGGTACGTCCCAGACATCGCCGTGGTCCCCGAGGACCTTGCGAGAGGCGGAGGCGCACTGCTCCCGGACCAGACCCTGCTGATCGTAGAGGTGACTTCAGAG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 39899-40658 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000007.1 Streptomyces sp. Root63 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39899 29 86.2 32 .........A.C........A....T... ACCCTTGATCAGGAACCGGAGCCGGGCCCACG 39960 29 82.8 32 .........A.G.T.......C...T... GACCGGATGGTCCAGGCCGAGCGGACCTTCGT 40021 29 86.2 31 ...........G......A......T..G ACGGCGCTGGCGGCACCGACGGCATGCCCGA 40081 29 93.1 32 .....A...................T... AACCGCAACCCGGAGCGCGACGAGACCGACCG 40142 29 86.2 32 ..C..........G...A.......T... AGCTCCGCGATCTTCGCGGCCACAACCGGGTC 40203 28 82.8 31 T..........G.GT..-........... CGCAGTACGTCCAGTGCTCCGCGTGCAGGAC T [40227] 40263 29 100.0 32 ............................. GAACCGCAGCTGCACCCGGCCAGCGTCGCCGG 40324 29 100.0 32 ............................. AAGGTCGGCCGCCGCCACCAGCTCGCCCGACA 40385 29 100.0 32 ............................. TTGCACGCATGCATGCTCACCTTGCTTGCATG 40446 29 100.0 32 ............................. GGTTATGACGCCGCCAGCCTCAAGGCCACCGG 40507 29 100.0 32 ............................. ATGGTTGACCCGTCGGTACCCAGCGCAGAGAG 40568 29 93.1 32 ................T........T... GAGACGCTGTGGCACATCCCGCCGGGCGAGTT 40629 29 96.6 0 ...........G................. | T [40654] ========== ====== ====== ====== ============================= ================================ ================== 13 29 92.8 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : GTGTGTCGAAGGCTCTGGAAACTTGGATCTCCCGGGGTCGTCCAACTGGTACGTCCCAGACATCGCCGTGGTCCCCGAGGACCTTGCGAGAGGCGGAGGCGCACTGCTCCCGGACCAGACCCTGCTGATCGTAGAGGTGACTTCAGAGTCAAACGCCGAGACCGATCGAGTAGTGAAACGCCGCCGGTACGCCGAGTACGGTGCCCCGCTCTATCTCCTCGTGGATCGGATGGAGGGGAGCCTGACCCTGTTCTCGGAGCCGGGCCGGCTCGGCTACACCCGAGTCGACGGACCACACCCCTTCGGCACCACAGTGCACCTGCCAGCGCCATTCGGCCTTGACCTCGACACGGCCGGCCTCGCGTAGCAGTCAGATCTGGCAGTCGGGGCTCCGCATGTACAGAGGGATGGCCGCCTCCCGGCACAGGGCAGCCGGGCCACCCTGCCTTCGGGTGCGGGGCTACATCCCACTTCCGGATATCCGGAAGTGACTCATCGAT # Right flank : CGCGCCGGGCGGGGGGTCCTCGATGCGAAGGCCCCCCTCCTCGACCTCGAAACCACGGCGGACATCCCCACCGCCCCCTACCCCGGACTCGTCACCCTCGGAACGACGGAGAACGGGGACCTGCTGCTCACCGACCTCCTGCACACCGGGGCACTGCTCCTCGACGGCACCGCCGACGACGTCCTCGCCGTCGGCAGGGCGATGACCCTGGAAGCCGGAACGTGCGGGTGGACCGACCNCACACCGGGGCACTGCTCCTCGACGGCACCGCCGACGACGTCCTCGCCGTCGGCAGGGCGATGACCCTGGAAGCCGGAACGTGCGGGTGGACCGACCATACCGAGATCATGACCGTCGGACTCGGGACCCGCCTCGCGACGCTGCTGCCCCGCGGCCGGGTCCGGCCGCTGCCCCATGTGTCCGCGTCGTCGCCGACCTCGGAGCGCTGCTCCTGGAGGTCCACCAGCAGACCGGCACCACGGACATGCCCGAACCGCTGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 43237-43874 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000007.1 Streptomyces sp. Root63 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43237 29 86.2 32 GGC.........................T ATGGCTCGGATCCGGGCCCTGGAAACACTGGT G [43239] 43299 29 100.0 32 ............................. GAGGGCATTGTTCCTCTCTGGAACCGCGTAGC 43360 29 100.0 32 ............................. GGCAAGGTCACGGCCCGAGGTGAAGAGCAGGC 43421 29 100.0 32 ............................. TCGTCGGTGATCCCGGCCCCGACGAACCCGCT 43482 29 100.0 32 ............................. GCGCGGGGGCATCCGCACTTGACCTTGACCCG 43543 29 100.0 32 ............................. TCCCACCGCATTCAGTTCCATACCAGCGCCAG 43604 29 100.0 32 ............................. CAGGAGTACCAGCTCACGATCGATACTCTCGG 43665 29 86.2 31 .........A...GT.............T CGCCCTCGATCAGCGTGGCGTCGATGATGAT 43725 28 82.8 32 .......TT...-.....A.....T.... GACGAGTGGATCGGGCAACATGGGTTCAGTGA 43785 29 93.1 32 ...........A.T............... GAAGCCGGGTTCGTCGCCTCGTGGAACGCGCC 43846 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.0 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GTCCGGGACCGGTAGCCGCTTCTCCAGTTCCCACCGCTTGATGTTCTCCCAGTCGAACCACCGGCCGCCCTGGGCCTGTTGAACGACCTTGGCCTGCTGATCTCGGGTGCGTCCGGCGCGTTCGCGGATCGATCGAAGTAAGGCGCCGATGCCGTCCGGGGCCACCATGACACTTTCCCTCCGTCGCCGTCGGGGGTGGCCCTCATCCTGGCCCCCCGGAGCGGCCCCCCGCCGGGAAACGCACCCCTTCGTGGCCCCTCATTCCTTGTGTTCCCCGGCAGTTCAATGGGCGAACGCCACCGACCCCTCGGCTCGTCGCCGGAACGGTCTCGGCGGCGGGCCGGGGTTCCACCGGCCGCACGGCGCCACCCGGACAGACAGGCCAACTGGAGGGGATCATGGACACCGAAGCACCCGTGGATCGGCTGCCGGCTCGCGTCGCCTGGGAGGAGACGGGAACGGCCATCGTTCCCGGTGTCCTTGAGTCGGACCGCTTCAAG # Right flank : CACCCGACCGAGCCCGAGTACGAACCTGCCCTGCTCCTTGGCCGAGCCGCCGCAGGCCCGCTCACGAACTCCTCTCCGCACCATGGAGTGGGAGCCCGGTGGATTCCCGCGTCCTACAGGTCGAGTACCGCCCACATCCTGCGGCCGTCTTCTGCGGTGTCCGTTCCGCACGAGACCGCGCCCAGGCTGGTCAGTTCTGCCAGGACGGCTGTGCCCGCGACCGCGAGACCTGGCCGGTGGGACAGGGCGACGATCAGCGCCTGCCGGTTCTGGTCCGCGAGGTGCAGGGACACCCTTCGGCCGCCATCGGCGACCGCAGCCCGCACCAACGCCTCCGTCAGGTCACCCGCAGCTTGGTCGGCCTCTCGGTATCCCCAATCGTGCAGCTGGCGCACGACATTGGTGCAGGCCTTCTTCGGCGACCAGGCAGCTGCCTCGAGCGACCAGTTCGCCGACCGCCGGTTCCGTACCAGCATCCGAGCCCGCGCCGTTGCTTCCAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 44647-46871 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000007.1 Streptomyces sp. Root63 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 44647 29 100.0 32 ............................. GCGCCGACCTGGAGGCCGGTCGGATCGAACTG 44708 29 100.0 32 ............................. GGGACGTAGCCCTCCCCCATCGTTTCGGGCTC 44769 29 100.0 32 ............................. GACGGGCCCGCGCTCGCGGCCAGGCTCGCCCG 44830 29 100.0 32 ............................. GTCAACTTGAAGCTCGTGACGGGGAGCTTCAG 44891 29 100.0 32 ............................. GTTCCGCTCAGCGTCCGCACCTCTGCGCCGGC 44952 29 100.0 32 ............................. CACGCCATGAGCGCGGCGAGGAGCGCGCCGCC 45013 29 100.0 32 ............................. GCGGCCTGGCTGGCGGCGTTCGGCTCGGTGTG 45074 29 100.0 32 ............................. CAGGCGGACAGCCGGAGGCTGACCCGGGCGCG 45135 29 100.0 32 ............................. ACCAGTCAGAAATGCGCACGGCCCCGGTGTCT 45196 29 100.0 32 ............................. GACGACGCCCAGGAGCGCGAGTGGTCGGAGGA 45257 29 100.0 32 ............................. GGTGCACGGCGGTTGGTGTTCCTGGTGCGGAC 45318 29 100.0 32 ............................. GACGCCAAGCTCAAGGACTCCGAGGGCCGGAT 45379 29 100.0 32 ............................. GCGGACATCTTCGGCCGGCTGACCGCCGGGAA 45440 29 100.0 32 ............................. TCCGCTTGCCCCTGCTGGACATCCGATGGCCA 45501 29 100.0 32 ............................. GCGAGGACGGCGGCGCGAATGCGGGCGGATGC 45562 29 100.0 32 ............................. GTTCCGCCGGTCGGTGCCCCGGTGACGGTGAG 45623 29 100.0 32 ............................. CAGGCACATCAGAGCGCCGGGCCAGATGCCTG 45684 29 100.0 32 ............................. AACAGCAGCGCCGCGAGCTTGATCGTGGGCGG 45745 29 100.0 32 ............................. TGCTTGACCATCCGGACGTCGTCGGCCAGCTC 45806 29 100.0 32 ............................. ACCGGGGCTGCAAGGGCCGTTCCACGTGAAGG 45867 29 100.0 32 ............................. GGCGGCGACTGGATCGGCACCGTCATCCGGCA 45928 29 100.0 32 ............................. GCCCCCCAGGCGGATCATCGACGATGCCATAT 45989 29 96.6 32 ............................G AAGAGCCGCATCGAGATCACCCCGGACACCGG 46050 29 100.0 32 ............................. GCCATCTCGAAATCACGGTCGAGCGTGGGCAA 46111 29 100.0 32 ............................. TGACCCACATCGGGACAACCGAGAACGGACGG 46172 29 100.0 34 ............................. GAGGCCCGGTCCCAGATCCTCACGACGTGGGCAA 46235 29 96.6 32 ...............A............. GAGAAGGACCGCGGGGAGGACGTCCTGGCGGT 46296 29 100.0 32 ............................. GGGCTGCTGGCGATGACCAGCATGCGGCTGAT 46357 29 100.0 32 ............................. ATCGACGTCCGGCGCTGGCAGGTCGAGCAGGA 46418 29 100.0 32 ............................. TGACCATTCCGCCCACGTGGGTGGCGGACCTC 46479 29 100.0 32 ............................. GTGTCGCCGGGCGCCTCGGTCGGGCTGATCTT 46540 29 100.0 32 ............................. CAGCCGCCGCCCTGGACCGGGATGTCGATGAG 46601 29 89.7 32 ...........G.GT.............. TCGGCTGGGCCGACGTTCCGACGCGCGGCTCA 46662 29 89.7 32 ...........G.GT.............. GCCACGGACCTCCGGGGCAACGCCAACGCGAC 46723 29 89.7 32 ...........G.GT.............. AGCAACGGTGCGGCGCAGTGGCTGCTGCGGCA 46784 28 89.7 32 ..............A........-.C... AGGGCGTCCAGGCCACCCTTCTCGGCGTCACG 46844 28 75.9 0 ....-.....GG.A.AG.......A.... | ========== ====== ====== ====== ============================= ================================== ================== 37 29 98.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCCGCGAGGTGCAGGGACACCCTTCGGCCGCCATCGGCGACCGCAGCCCGCACCAACGCCTCCGTCAGGTCACCCGCAGCTTGGTCGGCCTCTCGGTATCCCCAATCGTGCAGCTGGCGCACGACATTGGTGCAGGCCTTCTTCGGCGACCAGGCAGCTGCCTCGAGCGACCAGTTCGCCGACCGCCGGTTCCGTACCAGCATCCGAGCCCGCGCCGTTGCTTCCAGGCTCGTTTCAGGACGCGGCGGCTGTACAGGTCGCTTCGGCGGTGGCGGAGTCTTCGGCGGGTAGTCCGGTGTGTGATCCAGCACGAGTGCTCCCAGGATCGGCGCGGGTACCCATCGTAGAGGCGCGATTACCTGGCGGGACCAGAACTGTTCGCCGGGTGCTGGGGATAGCCTGGTCGTCACGGCAGGAGAAAGCTGATGGTCGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACGCTTTCCCGCTCTAACGCTGCAGGTCAGGAAGT # Right flank : CCAGTCGCGGCGTGGGAGCGGCGGCTTAGCTTCTGCTTCGTGCGGCGACGGGATCCGTGCGACGCCCGGACATCCTCGCGCTTTTGCGGGGTACGCGGATGGCATACCGCTCGGAGGAGGAATCATGGCCGGACTGATCGCCCGTCTCACGCAGTTCTCCCGCAGCCCTCAAGGGCGGCGGACCTTTGCGTCGGCCCGGCGTGCCGCGGCCGACCCGGGTAAGCGCGCCCAGGCTCGCAGCCTGTTCGGCCGGCTGCGTGGACGCAGGTGACCTCGGCGCTTCGGCGGACGACCGGAGGCACCTGCTGACGTTGCTCATCGGAGTCTGAGATGAGGGGCCTTGGGCGGAAGTCGAGCGCTACTCTGGGCATCCGGCGTGTTGGAGGAGAGGCATATGGCGCACGAGGACTGGACAGTGGACCGGTTGCACGTCGCCCTGCCCCACTCGGCTTCCCGGCAGCAGCTGCTCCAGGACGTGAACCTCACACCGCTCGAAGAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 47933-49113 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGX01000007.1 Streptomyces sp. Root63 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================== ================== 47933 29 100.0 32 ............................. CATAGAGTTGCCGCCTGGCGGCCTTTCACTCA 47994 29 100.0 32 ............................. GGGCGTCGGTTGAGTGGGAGGGGAAACGCACT 48055 29 100.0 32 ............................. TTGCTCGTGTTGCTCGTGCCCGGGACCGTCGA 48116 29 100.0 32 ............................. GCGAGGCCCGGCCTCCCGCCTGGCAGCTACGG 48177 29 100.0 32 ............................. GACATGATGGAGCTCCTGCTCCGAGACATCAG 48238 29 96.6 32 .............C............... GCGGCGGGCTCACCCTCATCGCCACACGCATC 48299 29 93.1 33 ...........G..T.............. GGCCCCCGTCGCCACAACGAGGACCGTTCACCT 48361 29 93.1 32 ...........G..T.............. GCCCAGGTCTCGTCGGTGATGTGCAGGACGGC 48422 29 89.7 32 ...........G..T..........C... ATGTCTCCGTCGGCACCGAGGAGGGGGCTCGG 48483 29 86.2 32 ......T.T..G.C............... GGCCGGCCGATCGTCCGCGAGTTGTACGGCGA 48544 29 82.8 149 ..........TG.CT............T. GCCCTCGTTCCCCGTGGTGTCGATGGTGATCTGCTCCTTGCGCGGCAGGGACCCCGACGAGTGGATCGGGCAACATGGTTTCAGTGATTACTCCTTCGCGAACATGAGGATGGCCCCGGTCCGTCGCCATCGACACCTGAAGGCCGTCG C [48569] 48723 29 93.1 32 ...........G.C............... GAACTCCGGGACGGGTGGCTGGGCACCGTCCA 48784 29 89.7 32 ...........G..T........A..... AACGGCCTGGTGGACACCGCCACCCGGAACGG 48845 29 86.2 32 ...........G.CG.............T CGGTCTGTCCGGCCCGCAGCCCCGAGCCTCAC 48906 28 82.8 30 .....-......TC........G..C... TGACGCAGCCACCACCTACGTGCTGTCGTC 48964 29 72.4 32 .A....G....G.C.T..AC.T....... GTCTCCTCTCTCGTCGAGGCCGCGCGGATCAG 49025 29 82.8 32 A....T...A.T.............C... ACGTCGGTGTAGGTGTGGGACGGGCCGGTGTG 49086 28 72.4 0 .......G...-....A.CATG.....T. | ========== ====== ====== ====== ============================= ===================================================================================================================================================== ================== 18 29 90.1 39 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ATCGAGACAGCCCGCCGCACAGCACTTGGCGGTGCTCTGCCCGTCGAACTGGAAACGCGGGACGTCACGGCGGACGTGATGCGGGACGCCGAACCGCGCCAGGGGCACGGGGCCGGCCGCGGCCGGGGCGCCGCGTGACCTATCGGCTCCACTTCCCTGGGGACGTGTTCGACACGTACAAGCAGCTGCCCGAGCTTGCCCGGCGGGATCTCGCGCTCGCCCTGGTCGACGCCCAGGAAGACCCTCTCGCGAGCTCCGAACCGTACGGACAGGACGACGGCATCATCCGCACCGTCGCCCAGGGACACGTCACCGCCGTGCTCCTCCTCGGCCAGGACACGAGGACCATCACCGTCCTCACCATCGCCTACGCCGGAACCACCTGACCTGCGGTCAGTGACACAGCGAAGGCTCAAGGTTGAGGAATGGTTGATTTGTCGGAATCAGGGAAAGTGCTCGAGAATCGCACCCACTCCTTGTAAAGCTGCAGTTCAAGAAGT # Right flank : CTCCGTGGTCGCGGACAGCCGGCCAACGTGCTGTTCCCCGCAGCCGCGGTTGGCGTCCGTGCTGTCGTCGCGGTCGAGGTGCTCCGCCACGATCCGCGGGCTATCGGCTCGATGCCACGGCATCAGCCACACGGAGGCGGAGCCAACTTCATGACCGATATGTCGCATTCGGTGAAAGTGCTCGAGAAGTGCACCAACCCGCTGTAAAACTGCAGGTCAAGAAGTCTGCTCCCCGCGCGTGCGGGGATGGTCCCGCCGGTTCGAGCTTGGCCCCGTTGCGGGCGTACTGCTCCCCGCACCCGCGGGGATGGTCCCGAGCTCGCCGCCGCCTTCGGCATTCTCAACCCTGCTCCCCGCACGCGCGGGGATGGTCCCTTCTGTGACACGGCCACTCTCCGTGACTGCGGGTCACCGATTAGATCTCGAACAGGGCGTCCTCTTGTGGCGGGATCGGAGGGTCAAGGACGTCGCGGAGGCGGGTGATGTCCTGGCGCCACTTC # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.62, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //