Array 1 32116-29525 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIGE01000002.1 Raoultella ornithinolytica strain RO79 K79_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32115 29 100.0 32 ............................. GATGCGGTCCCTCTCGCGCTGCGGAGTGTCGT 32054 29 100.0 32 ............................. CGTTTACTTGTATTTTAGTTGAGTTTACAATC 31993 29 100.0 32 ............................. ATATCGCCGCAAGTTTTGGACTGGTTGAAAAA 31932 29 100.0 32 ............................. CCTTCCGGGTTACCTTTGTTCGGTGATGAAAT 31871 29 100.0 32 ............................. CAATGAGGAAATTTCCTCAACCAAACTATGTT 31810 29 100.0 32 ............................. CGTTTCATGGTGTCGATAATCCTCTTAGTTTG 31749 29 100.0 32 ............................. GTGATCCTAGTGGGTCGCATCGGAATGGATCC 31688 29 100.0 32 ............................. TCACCAATGTTAAGGGCAATATCACCACCATC 31627 29 100.0 32 ............................. GAAACGCGTATGTACGGTTGCCAGGTTTCTTT 31566 29 100.0 32 ............................. TGAGTGATAAAGCTCCTGAGCCTCCCACGCTT 31505 29 100.0 32 ............................. GCTAGGCTCCATATCAACATAATCTTCAGGGT 31444 29 100.0 32 ............................. CCAGCGCCGTTTTTCCTGCGCCGGTAGGTGCC 31383 29 100.0 32 ............................. CCAATGGTTGCCGTGGTATTGGCGATATCAAC 31322 29 100.0 32 ............................. TGACCCAGCAGGGCAACGAGATTGACGCAGCA 31261 29 100.0 32 ............................. GCCTTATTAATTTCCGCAGCACCTGGTATTTA 31200 29 100.0 32 ............................. TCACGGTTGTTCATCATTTACGCCCCGTTGAT 31139 29 100.0 32 ............................. CATACGGTGGCATTGCCAGCGTTGCCCAGATC 31078 29 100.0 32 ............................. AAGACGCAGCACTGAACGGCAGCAAAGAACGC 31017 29 100.0 32 ............................. TAAACAGGTTATTGGAACAGCCGATCAAACGC 30956 29 100.0 32 ............................. GAAGTGATCCATACTCTGTACATCAACTGAAC 30895 29 100.0 32 ............................. AGTGAGGCGAACGAGCTGGTTATCGAGGTGAT 30834 29 100.0 32 ............................. TTTGCGAGGCGAACGGCATTCCTTTCGTTTTC 30773 29 100.0 32 ............................. GCACCCTGCCCGACGCAATGGACTCGATTTTT 30712 29 100.0 32 ............................. TTCAACCATCCAGTGGCCAATCGCACTGGTTA 30651 29 100.0 32 ............................. GTTTATGGCGCATGCGTCGCAAACATGGCACT 30590 29 96.6 32 ............................C TCATCAAATAAGGCATTAGTTATCTGTCTGGC 30529 29 100.0 32 ............................. TGGGATAACATTGCTCATGGTAAGCCTCTACC 30468 29 100.0 32 ............................. GCAGGTTCCAGCTCACTCGCGTCAAACTCGTC 30407 29 100.0 32 ............................. TCCCCGTCTAACTCGTCCGGGTCATCCTGTTT 30346 29 100.0 32 ............................. CAAAAATGAAATAAATCAGGGTGGAGGGGTTG 30285 29 100.0 32 ............................. ATCCGTTTGTGTTCAGGCGCTGAGGTACCGGC 30224 29 100.0 32 ............................. GGGATAAACGAGGTTAAAACCCTGGTCCGCGA 30163 29 100.0 32 ............................. CTGACCACCACACCACATTCTGCTTTCTGTTC 30102 29 100.0 32 ............................. CGGAGAAACCCCGGCATGGAGATATCGTCATT 30041 29 100.0 32 ............................. AAACTGGCATAAATCTAGAGTAAGAGCCAGCG 29980 29 100.0 32 ............................. ACATTACGCAAACTTTATTTATATGCTAACGG 29919 29 100.0 32 ............................. GCCAGACCAGCCTCGATGATCTGCTGTGGTTC 29858 29 96.6 32 .............T............... GCCAGACCAGCCTCGATGATCTGCTGTGGTTC 29797 29 96.6 32 ............T................ CTATATATTGTCTGGTCATCATCACCGACTAT 29736 29 100.0 32 ............................. AATCAGGGCGACGCGCTCTCGCGTGTGGTGCC 29675 29 100.0 32 ............................. CTGATTGGTTATGCACGGGTGTCCACCGGGGA 29614 29 96.6 32 .............T............... GTCCGTGTGCGCGGAATATTCCCGGATGCGTC 29553 29 93.1 0 A...........T................ | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGAGGTTCTTGCCGCGGGGGAAATCCAACCTCCAGCTCCCCCTGAAGATTCGCAACCCGTTGCGATCCCACTTCCTGTCTCGTTGGGAGACTCTGGCCATCGGAGTAATTGAGGATGAGTATGCTGGTTGTTGTGACTGAAAATGTACCACCGCGACTGCGAGGAAGGCTGGCAGTCTGGCTTCTGGAGGTCCGCGCTGGGGTTTATGTTGGCGATGTTTCAGCAAAAATTCGCGAGATGATATGGCAACAAGTCACTGTTTTGGCACAAGAGGGAAATGTCGTGATGGCATGGGCAACGAATACTGAATCAGGATTTGAATTTCAGACTTTCGGTGAAAACCGACGTATTCCGGTAGATCTGGATGGGCTGAGACTGGTGTCATTTTTACCCATTAAAATTCAATAAGTTAGTGTTCTTTAAAAATACGGAAAGTTTGGTAGGATTGAGTGTGTTGAAAAAAGTCTTTTAGTTCAGTTGCATAGCGTTAGA # Right flank : CAGCGCTGTATTACTGCCTGGTAACGCAGGGATGTGCACCTTCCCCGTAACAGAAAACGCCGGCTAGCCGCGCTTTTCCGCCTTTGCCAGCTCTTTTATCAGCGGCAGCATCACCTTGACGACATCGCGGCTGCGGTGTTCGATACGACCCGGCAGAGCCTTATCAATATGCTGCTGGTTATCCAGCTGTACGTCATGCCAGCTGGTTCCTCGCGGGAAGGAGGCGGATTTGTTGCGCTGTTGATAGCCATCTTTCTTACCCAGAGACCAGTTCGTGGCCTCCACGGACAGGACCGGGATCCCCGCGCTATCAAAAATGCTGGCGTCATTACAGCAGCCGGTACCCTGCGGATAATCATGATTGAGGCCAGGATTGGTATAGGCGGCAATCCCTTTGCTGCGCGCAATAGCCAGCGCGCGGTCTCGGGTGAGTTTGCGAATCGAGGCGGGAGTGCTGCGCCCGCTATTAAAATAGAGCTTATCGCCAACCACCAGATTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //