Array 1 282850-281907 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNQP01000001.1 Thiothrix caldifontis strain DSM 21228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 282849 36 100.0 34 .................................... GTTAGTATCTCCCTGATGTCAAAACCTCAGGAGA 282779 36 100.0 33 .................................... TTAAACATATGCTGTCCTTTTTAACATTAATTA 282710 36 100.0 35 .................................... GCTGAAAGGTCTGACTGAAGAAGAGTTTACGCCCT 282639 36 100.0 34 .................................... ATGGGCTTAGAACGCAGACGGTTGAACTGCAAAA 282569 36 100.0 35 .................................... TACAGCTTATAAGCCACAATGGGCGTTATAAGAGG 282498 36 100.0 34 .................................... AAGATCGGCAAGGGGTACTGACGTTTGTCTTTTC 282428 36 100.0 33 .................................... AGCGGTGTTTTTCAGAAATATGGAAAGCAATTC 282359 36 100.0 34 .................................... TTGTGGGTGAAAGGAACAACAGGATTGTTCCTTC 282289 36 100.0 33 .................................... TGCAGTACCGAATGCTTTTTCGTGATCAACTAA 282220 36 100.0 32 .................................... CTCACGTACAGATTGGTCTTCACGGTTAATGA 282152 36 100.0 33 .................................... AAACTTACATTCTTGCTTTTCTACGTCAGGAAT 282083 36 100.0 34 .................................... TCAACCTTAGCGGGATAGGCAAGCGCCCACAAAA 282013 36 100.0 34 .................................... ACCACCACCAAGAGGTTCGTTGCGGACAATCACC 281943 36 80.6 0 ..........................A...CGTCTT | T [281909] ========== ====== ====== ====== ==================================== =================================== ================== 14 36 98.6 34 TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : CGATTCGTGGTAAGCGGCAGATTAGTTTGGATAGTGACCCGCCACCGGATTTGGCGGTGGAAATCGACATTTATTCGCCGACAGATCGGGCGTTGTATGCGGCGCTGGGTGTGCCGGAGTTGTGGATATACGATGGCAAAACGTTGGTGATTTGGGTGTTGCAGGCAGGTGAGTATCACGCCGTCGAGTTTAGCCCGCATTTTCCGGGGTTGGCGTTGCGGGAGAAAATCCCGGTATTGCTGAACTTGGCGGAACGTGAGGGGCGCATGGTGGCGATGAAGGCGTTTCGCGCTTGGGTGGATGAAAATCCCCCCTGCCCCCCTTTTGCAAAGGGGGGTTAAGAGGTGTAATATTGAGCTATTCACACAGACAGAGGGCTGTGTTGCTTGTTTAAAAATCTAACTTGATCAGTTTTTTCTCAAGACAACTTTTTATACAGTGCATTTCCTGCTAAGGGTCTCTGTAACCCACTGATTCAAAAGGCTGATTCGACACGAGCC # Right flank : GAGGTCAACAAAATTACGTCTATACGTCATACGCTTCTGCTGTTATCATTAGTTTAATTTATCAACAAAAACAATACAGGGCTTTTTATGGGAACGCGCATACACGTTATCGTTGCAGGTTCGATCTTCGCAGGCATCGGCCTATTCTGGGTACTCGGTACAGCGATTGAATCGTTTGGTGTTTACCAAACCCTCGCCAGCATCGTGCTCACCCTCGCACTCGGCATGTTTTACCGTATCGGTTACAGCGACGGCAAGCACGCTTGTTACATGAACGCTAAACCCGATCAAAGCCACGCCCTGCAACGCCACGAACCGCGTATTCAAGATTAACGCCACCCATTTCACGACCAGTACCGGCAAACTTATTTGCTGCAACGCAGCAATTTTGTTAGCCTAGTGTGAACCCTAAGTCCTATAGCAACGTCTAACGTCACACAAGGCCCACTCACTAGGCTAACAAAACAGGTACTTACATGAAAAACCATGTCGTCATTGGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 667-878 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNQP01000020.1 Thiothrix caldifontis strain DSM 21228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 667 29 93.1 32 CA........................... CCATTCAAATGGCGGCAGGCATTGCCCTAAAA 728 29 100.0 32 ............................. TCGGGCGCGTTGAAATACCTCAAATCAAAGCT 789 29 100.0 32 ............................. ATGGTGTGCTGGGCGATAGCATAATCGTCGCT 850 29 93.1 0 .........................C..C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGTTCCCCGCGTCTGTGGGGATGAACCG # Left flank : CTTCAACCGCTTGCCGACAAAACAAACGGAGGAAAAAACCTAATAATTGGATGAGATTACAGCAAGTTAGGGAATGGAGGGCTTAAAGTTGATGCGTATAAGGTAGTTCCTGAGGATACCGTCCCCACCGGTATAACCCTGTTCCTGAAGTTCCCGGTACAGCACCGTGGCTGGAATCCAGTGCGGGCGGGCGGCCTCCATCCGTTCATGCAGGTAGGGCTTGAAGGGTTCCAGCAAAGAAGGCCGTTCGGCCCGCTGGTACTGCGGCGTCCGTGCTTGGTTACGCAGATACTGCCGCACGGTATTGCGGGATAGGTGCAACTGTCTGGCAATCGCTCGGATGCTCATACCCTGACGATGTAAAACATGGATATCCACGACTAACTCCTGAGTCAACATTGGCTTGCTCCGTTTTCCGCATCGGCTGAAAACGGCATTTTGCTGTTCAGGTGGGTCAATTTTAAATTGTCATCGGTGGGTCAGTTTTACATTGCTGGTGA # Right flank : CGGATTCTTGTCAACACAGACTGAAAACTGCCCCACCTTACGGATTTAAATGTTATACATAATGACCCAACGGCTAGTTTCTACGGAATGTGATTTGATTCTCTATACCCCCCCTGCCCACACGGGCTTAAACATTCTCTACATTGACGAAGCAATGATCGTGGTCGATAAGCCAACCGGGTTACTCTCTGTCCCCGGGCGTGGTGCAGACAAACAAGATTGTATGATTGCCCGCGTGCAGGCTGAATTTCCTGATGCGTTAATTGTGCATCGGCTCGATATGGGGACGTCCGGTATTATGGTCATGGCACGGGGTAAGGCGATGGAACGTGCTTTAAGCATCTTGTTTCAAACCCGGCAGGTACATAAACGTTATGTGGCAGTAGTAGCGGGGCAGGTATCCCCCACTCGCGGGGAGATACGTTTACCTTTGTTGACAGACTGGCCTAATCGCCCGCGTCAGATGGTCAGCTTTATGCTGGGTAAAGCGTCTTGTACAC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3159-3824 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNQP01000034.1 Thiothrix caldifontis strain DSM 21228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 3159 36 100.0 33 .................................... GCAACCGCATTGGGGTTTGACTGTGAAGGAAGT 3228 36 100.0 34 .................................... TCTTTCAACACATTCTTTAAATGTTTGCATAATA 3298 36 100.0 33 .................................... GCAACCGCATTGGGGTTTGACTGTGAAGGAAGT 3367 36 100.0 33 .................................... AATTAACGAAGGGTTTAGAAAGAAAGTTGAAAC 3436 36 100.0 35 .................................... TGTTGTGAGACATCATCTGAACCACAAAAATGGCA 3507 36 100.0 35 .................................... GCTCCACTTTGTACCGTCTGGTGATGTTCCGCTTC 3578 36 100.0 33 .................................... TTAACACATCAATATAATGCCCGTTACGAATGT 3647 36 100.0 32 .................................... GCTTTTGTTCATTGGTGGCGTTCCCAATTAGA 3715 36 100.0 37 .................................... CAACGAATAAGACACGCTTACCGTGACTTGCAAGAAA 3788 36 80.6 0 ...........................T..CGTCTT | A [3814] ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 98.1 34 TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : TCCGCAGCAATATGGAAAGCCGCTGGAATGCCGCCGAAGGCAAAGACTCACCAGAGCGGATTGCCGACCAGATACGCAATGTCAGAAATGACATCCAGCACGGTGGTTTTAAGGAAAAAGATGCGCGTAACCCTGCGAACAGTTTGATTCGAGACTTGCAAATACTGCTCGACAAATTTGAAGCAAAACTGAAGGCGTAATTGTCAACGGTTCGTTTAAAGGCAGTTGTCGGGCTGAAGCCCGACCTACAGTCAGCCACAATCCTTAACTTTAAGGTAGGGATCAAATCGAGCACTGATAGCAGCAAAACTGCCGAATAATCCTTCCATTTTTCAAAAAATCATTGTAAAATCAGCGAACTAACACGCAAAACCTGAGCGTGTCGTTTCTTTAAAAACTTATCTTGTCGCATTTTTGTCCAAGGCAACTTTTTATACAGTGAATTTCCTGCTAAGAGCCTCTGTAACCCATTGATTCAAAAGGTCGATTAGACACGAGCC # Right flank : TAATATTGATAAAACTTTTTGATCAGTGATGACTGCTGAGCTTTTACCAAACCATCCGTGATGATGATATTGTTGATCTGAAGCTGTATAATTACATTGTCGTTACCATAACGGATTTGTCAGGATGCAAGAGCGTGATTGGAAAAAGTTTGTAAAAATTAAACAGACGGCTTTCGATAAATTTTGCACTCAAAGCCTGCAAGAGTTATCAGAACTTATTAATAATTCAGCAGAACACCCGTATGACCGTTTGCAATTGGCTCAAAAATTTCTGAAAGAAAAAAACACCAGAATGCACCAGCTATTTGATGCTCATAGCCGAAACCAAGCAACATTACAGTTACTCATGATACGCAATGCAGGTTTACTAGATGAAGTTTTATTGAGCACGTTATCGAAAGATTTACAGGAAAATACCAAGCCACAGTCATGGAGTGACTACTGTCCAGATTAAACCAATACCTCTCCTTTAAAGCATTAGCTTGCTGATAATGATAGGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 86043-88207 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNQP01000013.1 Thiothrix caldifontis strain DSM 21228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86043 29 100.0 33 ............................. TGCTTGACGATGTGCAACAGTTGCAGTAATATA 86105 29 100.0 32 ............................. GCGGCTGGGTCGGAAAAGGCGGACAAGCTCAA 86166 29 100.0 32 ............................. CATTGTTCACGGTGATTATCCAGCTATGACAA 86227 29 100.0 32 ............................. GAGCTTGACCAACTTAGACAGCAATCAGCACC 86288 29 100.0 32 ............................. CTTGTGAACTTGCCGAACGGCGGGATAGGCAT 86349 29 100.0 32 ............................. GGGATACGGTGAGGTGGTTGGGTTGGGCGCTC 86410 29 100.0 32 ............................. GCGGATGCAGCGGCGCAACAGGCGGAACGTGA 86471 29 100.0 32 ............................. GTTTCCCAATCGTCATAACCGTGCGCATCCTT 86532 29 100.0 32 ............................. ATGCTGACCAATCCACACAACCTGATCGAGTA 86593 29 100.0 32 ............................. CGTTGATTGATGCGTTGCTTCACAAATCGCTC 86654 29 100.0 32 ............................. GGGTTGTGGCGCACCACTGCTGGCGGTACGTT 86715 29 100.0 32 ............................. TTGCGCAGGTGTTCGAGGGCAGGGGCAGGCTA 86776 29 100.0 32 ............................. GCGCGTGTGCCTGTAGGGATTGCGTGGCGGAA 86837 29 100.0 32 ............................. GAAAATATGCCCGCGCAGTCAAGGCAACCCCA 86898 29 100.0 32 ............................. ACCATTAGATGATTGGTTAATGGTAAGATTTG 86959 29 100.0 32 ............................. TATTGGGTGTCAGTGTATTGACGATTGCACTT 87020 29 100.0 32 ............................. CCGTTATTACTAGCAGGTTTTAGTAAATTAGC 87081 29 100.0 32 ............................. AAAATAATGCCACTTATCTGAGTGGATTAGAA 87142 29 100.0 32 ............................. TTAGATTTAGACTTTGAAAAAGAGGCGTTTGA 87203 29 100.0 32 ............................. CGCTGGATTACCACTAGACGCTAATTTACTAA 87264 29 100.0 32 ............................. TGTGATAACGACGTGCCACACCATTTACATTG 87325 29 100.0 32 ............................. TGACTTCGCTAGTTCTGTATTTATGCCTTGAC 87386 29 100.0 32 ............................. GGCGACACTGAATTACTGGCACGCATGTGGGC 87447 29 100.0 32 ............................. ACATCGCCGCCGAAGTGCAGCGTGTATTGCGT 87508 29 100.0 32 ............................. TCCGCGCTGTCACAGGGCTTCCGCGAAATTTA 87569 29 100.0 32 ............................. GCGGCGATTTCAGCGAGTTGTTTCATGGCAGA 87630 29 100.0 32 ............................. GTGAGCCATGAGCGAAATGATAGAAGCCGCGC 87691 29 100.0 32 ............................. CAAAAATGCACCGTGGCAAATGGCAAGACGCT 87752 29 100.0 32 ............................. GGCCGCGCTACATCCGCACAATGGAGACCGCC 87813 29 100.0 32 ............................. TGAAACCTTTTGATACCAATCATAAACCTAGC 87874 29 100.0 32 ............................. CTACAGATTGAGCGTTTAACCAAGCTTGAAAA 87935 29 100.0 32 ............................. CAATATTCACGCTGGTTTCGGGTGACAGCCCT 87996 29 100.0 32 ............................. CGTTACAGGCAGTATGTCCTAAAATTTGAGAG 88057 29 100.0 32 ............................. GCTCAGATTTTGTGTTTGAGAACTACCGTCGC 88118 29 100.0 32 ............................. TCAGCGTGGAAATTGACGCATTCGCCCTGTCG 88179 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 100.0 32 GTGTTCCCCGCGTCTGTGGGGATGAACCG # Left flank : GAGGAGATTTTGGCAGCAGGCGAAATCAAACCGCCGGAAATGCCGCCGGAGTCCGTGCCGCCTGCGATTCCGCCTGCTGAGTCGTTGGGCGAGGCGGGGCATAGGAGTAAATGACGTGTCGATGTTGGTGGTTGTGACGGAAAGTGTGCCTCCTCGCTTGCGTGGGCGGTTGGCGATTTGGTTGTTGCAGGTGCGGGCGGGGGTGTACGTGGGCGATGTGTCGCGGCGGGTGCGGGAGATGATTTGGCAACAATGCACCGAGCTGTGCGATGAAGGCAATATCGTGATGGCGTGGGCGACCAATACCGAGTCGGGTTTTGATTTTCAGACGACGGGCAAAAATCGGCGTATTCCGGTGGATATGGATGGTTTGCGGCTGGTGTCTTTTTTCCCTGAGGCGGGTGAAAATGCTCTTTAACAATATACAAAAATTAGGCGACAAAATTGGTAGATTTCGGAAGGCTGTTTTTTCTTTTTCGATTCAATGAAGTAGAATTGGT # Right flank : GGTTTTTCTACACCGAACACAATTTTTCGGCATGTGTTCCCCTGTCAACACCGACTGAAAACTGACCCACTTTCGTCAAAATCACCGTTTTAAAAATGACCCACCCAATTCAGTCAACTTTTGTTTCTGGGGCAGTAAAAATGCCCGCCTTGCGCTTGTCTTTTAGCCTGTAGCTGTCCCCCTGTATCTTGATGACTTGGGCATGGTGCAACAGCCGGTCAAGCATGGCTGCGGTCAGTGCCGTATCGTTGGCGAACGCCTGCCCCCACTGCCCAAAGTTAAGGTTGGAGGTGAGGATCAAGGAACCTTTTTCGTAGCGTTTTGCCACCACTTGGAAGAAGTCATTGGCCTGTTCCTGACCCAATGGCAAATAGCCGATCTCATCCACCACCAGCACCCGTGGGGCAATAACAAGGCGGTTGAAGGCTTCGCGGTAACGCCCTTGGGCGCGGGCATTGCCCAGTTGCAGCAGCAAATCAGCAGCGGTGGTGAAACGCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33112-32000 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNQP01000033.1 Thiothrix caldifontis strain DSM 21228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33111 28 100.0 33 ............................ CCGAATACCTGTACCCGCACCGACCCACTCCCG 33050 28 100.0 32 ............................ ATGATCAGTTGACCGAGGGGCGGTTTCGTCAG 32990 28 100.0 32 ............................ AACAAAGTCTTTGACGGCTTCGGTCAGTGTGA 32930 28 100.0 32 ............................ ACACGGGCATAATGATGCAGAGACTTGATGGA 32870 28 100.0 32 ............................ CAGCTTGTCACCGGACGCGCTTCAATGATTTT 32810 28 100.0 32 ............................ AGCATCTGATCTGGTATCGGTACGTGGGCGCA 32750 28 100.0 32 ............................ CAGAGCCGCCAGACGCGCCGATTGGCGTGTTA 32690 28 100.0 32 ............................ CGGTAACTTCTTTGCCGAATTGTAACCCAAAT 32630 28 100.0 32 ............................ AAACTGTCGATCATCACGGAGTAACCCATGTT 32570 28 100.0 32 ............................ AGACGTAGCAGCACTGGCTGTGGGTTGCTTTG 32510 28 100.0 32 ............................ AGCAGGCTCAGCACTGGCTTCCTTCTTTTCTT 32450 28 100.0 32 ............................ AGACGTAGCAGCACTGGCTGTGGGTTGCTTTG 32390 28 100.0 32 ............................ AGCAGGCTCAGCACTGGCTTCCTTCTTTTCTT 32330 28 100.0 32 ............................ ACGTGAACCCGCCATCTTACGGGCAAGGTGCG 32270 28 100.0 32 ............................ CATATCAATATCAATGCGGACTGTGCGATTGA 32210 28 100.0 32 ............................ ACCCAGTGTTACGCGCAAACGTATATCAATGG 32150 28 96.4 32 ....................T....... TAATAATCTAGCTGAAGAGATACATGGTAAAT 32090 28 100.0 32 ............................ AGTAAACGGATTACACCATTTAGCGGAAGTGG 32030 28 89.3 0 ...................A......TT | C,TA [32002,32006] ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 32 ATTAACCGCCGTATTGGTGGCTTAGAAA # Left flank : ACCGGTATAACCCTGTTCCTGAAGTTCCCGGTACAGCACCGTGGCTGGAATCCAGTGCGGGCGGGCGGCCTCCATCCGTTCATGCAGGTAGGGCTTGAAGGGTTCCAGCAAAGAAGGCCGTTCGGCCCGCTGGTACTGCGGCGTCCGTGCTTGGTTACGCAGATACTGCCGCACGGTATTGCGGGATAGGTGCAACTGTCTGGCAATCGCTCGGATGCTCATACCCTGACGATGTAAAACATGGATATCCACGACTAACTCCTGAGTCAACATTGGCTTGCTCCGTTTTCCGCATCGGCTGAAAACGGCATTTTGCTGTTCAGGTGGGTCAATTTTAAATTGTCATCGGTGGATCAGTTTTACATTGCTGGTGACATGTTATCA # Right flank : TGTTTAAACGGCTCCAAACATTGGTCAAGCTGCTGATACGGGTACAACATAATAATTGTATCTAATGTTACCAAACTGTTATGGATAACTGGGTTAAAGGGTGTACCACCTCTATGTCGCCAACACCAAAACCCAAACTAAGCCTTAATAAAAAACCAATTTAAAACAGTGCTTTAGATAAACTATTATGTACCACTAAAGTGGTATTTCTCGTCGTTTACCCGCCATTACCCCCACTAGAATCAGGAATTTATCAGCCTAGAATCACCTTGAAACCACTTACGGTTTTGTTACGAGGTGAATTATGGCAACGCAGCAATACAAGGCATGGTCGGTCGTCATCATGAGTACGCTGGCTTTTACGGTGTGCTTCATGATCTGGATGATGTTTGCCGTCATCGGGATTCCTATCAAGGCAACCTTGGGTTTGAACGAAACCCAGTTCGGGATTTTGATCGCAACACCGGTACTGACCGGCTCATTGATCCGCGTGCCGCTAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAACCGCCGTATTGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 4826-1195 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNQP01000022.1 Thiothrix caldifontis strain DSM 21228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4825 28 100.0 32 ............................ CGTATTGGCAATTGCACCGCCCGTGGATGCTA 4765 28 100.0 32 ............................ CAACGCACGCGCTGCACTTGCCGCCGTAATCT 4705 28 100.0 32 ............................ ATGCTGTTGGAAATTGGCAAGCTGGATCAAGC 4645 28 100.0 32 ............................ GGCTGGAGTGCGTCACCGATCGCGCCCCAGTT 4585 28 100.0 32 ............................ CTTGCCGCCTTGCGTCTCAGTCTTTGGAATCG 4525 28 100.0 32 ............................ AATAGCACGGGGTCGCCCGCTTTCAGCAAGTA 4465 28 100.0 32 ............................ AGAAACAGGTGAGTTGACTGGTGATGCACTGC 4405 28 100.0 32 ............................ ATCGGCAGCCTGACAGAAACCACCTTTGTCGG 4345 28 100.0 33 ............................ AATTAAGTTCACCTTAAACCTCCTATGGATTTG 4284 28 100.0 32 ............................ TAAAAATGTATGCACAGGATGTGCTGTATCGG 4224 28 100.0 32 ............................ GCCAACCTATTCCGCGTTTTACTATTGTTGCC 4164 28 100.0 32 ............................ CGACAGTCCAACATAGTCTTTGACAGCAATTA 4104 28 100.0 32 ............................ AATCAATCGCTGGAGGCGGGGCAGGGGAAACC 4044 28 100.0 32 ............................ CATTGCGTCAGTTCGTCGGGGGTGCTGGTGGT 3984 28 100.0 32 ............................ AGCAGATGCAGCCCAATTTCGACTTGGTGGGG 3924 28 100.0 32 ............................ AAGAAAACAGTAGATGCAGCACTTGTCCATTT 3864 28 100.0 32 ............................ TCCAGCGCGAACGATGGTCTTTTTACGTCGAA 3804 28 100.0 32 ............................ TGACTTATTAGTATCAAAAACAACAGCATCAG 3744 28 100.0 32 ............................ TGATTCGCCATGTATCGCCCGACACTTCGCCG 3684 28 100.0 32 ............................ ACATTTTCGCTGCCGTCAAATGCGATAGACCC 3624 28 100.0 32 ............................ TGTGGGTTATTTGAAATGCAACGGGGCATTAA 3564 28 100.0 32 ............................ CAGCAATGTCGCTGTAATCTGTATCGCCATTG 3504 28 100.0 32 ............................ TATCTGCTCAACAAAGCGCGTGGCTAATCCAC 3444 28 100.0 32 ............................ AGTTGGGAAACCGTGAAACATCTCAAAGCCGA 3384 28 100.0 33 ............................ CGCGCGAAATGCGGCGAGCATGGGCTGGATGGA 3323 28 100.0 32 ............................ AGTGCCGCTTGCAGTCCAGTCACATTCGCAAT 3263 28 100.0 32 ............................ AATACCGCGTTGAACAATGCCAACACTGCCCA 3203 28 100.0 32 ............................ TGACGCCGTTGCATCCCAACCAACCGCCGTTG 3143 28 100.0 32 ............................ TTTTCTTTCAGCCAGTCGCGGAAATCGCCTGC 3083 28 100.0 32 ............................ ACCGCAGCAGGGCGCTATACCCTAGAGTTCCG 3023 28 100.0 32 ............................ GCAAGCTGGTCGCCGCGCATACGTGGGTACAT 2963 28 100.0 32 ............................ GGAAATCGCTAAGCCGATGGATGCGCCACGGG 2903 28 100.0 32 ............................ ATGTGCGCATTGTTGATGTAGTATTTCCGTCG 2843 28 100.0 32 ............................ AGTAGTCGGGGCCATTCCATTTTTCTGCAAAC 2783 28 100.0 32 ............................ ACGGTACGCTGCACCGTCTGCGATTGCACCGC 2723 28 100.0 32 ............................ CCGATCGTGCAAATACCGATACGCTACAGCCG 2663 28 100.0 32 ............................ GCGACATTATCGACCGCTGGCGGGGAAGGGAT 2603 28 100.0 32 ............................ AATATCATCACTTTGCCACGGGCACGCCTGAT 2543 28 100.0 32 ............................ GGAAATCGCTAAGCCGATGGATGCGCCACGGG 2483 28 100.0 32 ............................ AATATCATCACTTTGCCACGGGCACGCCTGAT 2423 28 100.0 33 ............................ TCAAAAACGGCGTGCCCGTGGCTTTAGCGGGGT 2362 28 100.0 32 ............................ ACAAGGTTTTGCAACCCGCCTGCCACATCAGC 2302 28 100.0 32 ............................ GGTACTGCGCTGATTGACACGAAGGAAGAGTT 2242 28 100.0 32 ............................ TCAAATCCGGCAGGTTGCCGCAGGCGCTTTGG 2182 28 100.0 32 ............................ TGAAGTTATCGCCACCGAATACGCACGGGCGC 2122 28 100.0 32 ............................ GAGAACCACGGGAACGTGGAGACGTTGAACAA 2062 28 100.0 32 ............................ TTGTCGATGATGCCCTTGTCGATGCCCTGCCA 2002 28 100.0 32 ............................ AGTCGCGGTAGTCGGGTTTTAGGTGTTCTAGC 1942 28 100.0 32 ............................ AAACAGTCGGTGCTGACATTAACGCCCTGCGT 1882 28 100.0 32 ............................ AGCAGCGGCGCAGTGTCTAGGTAGGGCTTGTG 1822 28 100.0 32 ............................ CAAACCGCACTAGAGTGGGCATGGGAAGTCGA 1762 28 100.0 32 ............................ GCGACATTATCGACCGCTGGCGGGGAAGGGAT 1702 28 100.0 32 ............................ TCTGGAATATGCGGAAGAGGAAAGGTTGCTAG 1642 28 100.0 32 ............................ CCGTTATCTCCATCGCCTCTCTGCGCGTAATC 1582 28 100.0 32 ............................ ATTATCAATCCTTGCCTAACTATTATGTCAAC 1522 28 100.0 32 ............................ TATTGCCGATGTTTAACACCGGCAATATTCCC 1462 28 100.0 32 ............................ GCAAAGCTTGCCCCATGCCAGCAACGAAACCT 1402 28 100.0 32 ............................ AATGATCGCCTGACCCCATGACGTATCCGCCA 1342 28 100.0 32 ............................ GTCTGGGGCGTGGTTGATTATATCCATTGTGT 1282 28 100.0 32 ............................ TACTCAAAAGCGAGGCGCTCAAAGCAGACGGC 1222 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 61 28 100.0 32 ATTAACCGCCGTATTGGTGGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGGATTAACCGCCGTATTGGTGGCTTAGAAAGTCCGTTCGCTCCGTTAAGTGTGGGCGGTAAT # Right flank : TGCAATGCAGCCACCGAGTGTCAATAGCAATCCAAAACTGACCCACCTTACGGGTTAAAATGACAATTTAAAATTGACCCACCCAAGCTGTTTTTCACTGACTTACTGGCGGGTCTTATCCTCCCTGACAGGCACTGTCCCTGCCATCTTTTTGTCCTTGAGACGGTAGCTGTTACCGGCGATCTGCACGATATGGGCATGATGCAGCAGCCTGTCCAGCAATGCTGCGGTGAGTGTCTGGTCATCGGCAAAGGCCGTTGCCCATTGAGAGAACGGCAGGTTGCTGGTGACAATGACACTGCCGTGTTCATAGCGTTTGGCAACGACATTGAAGAACAAATTGGCTTCTTCGCGTCCAAACGGCAGATAGCCGATTTCATCAATAACTAACAGGCGGGATGAGAGGATACTGCGTTTGAGGTAGTTATCCAGCCGCCCTTGCTTTTTGGCAGCCGCCAGTTGCAGCATCAGGTCGGCAGCCGTGATAAAACGCACCTTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAACCGCCGTATTGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 6307-6099 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNQP01000022.1 Thiothrix caldifontis strain DSM 21228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6306 28 100.0 32 ............................ AGAAGAATGCCGGAGTCCAGTAGTGCAGGATG 6246 28 100.0 32 ............................ TTTATTAAAAACCCAAACAACTGGAATGATGG 6186 28 100.0 32 ............................ TGAAGTGGCTACTCAGAGATTTGCTGAGATTA 6126 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 ATTAACCGCCGTATTGGTGGCTTAGAAA # Left flank : CTGTGCCGACGGGGTGCGCTTACCGTTGTTATACGCGCAGTCGCCAGTCGGAGAAGTTCAGCGATGCGTGGATTTTGCGGAGTGAGTCCCGCTTGCTGCAACATCTGGAAAAAAAGGGCGTGGTGTTGTCGATCAGCGAATTGCTGGCGCGGCGTAAACGCTTGCAAGAACGGGCTGCCCAAGCCAAACGTGACGCGGTTTATATCAAGTTGCAAAGCCACAGCACCCGCCAAACATTCTCTTTACTGGTGAATACGGCAACGGTGGATGCGGCTTGCTCTGGTCAGTTTTCCCATTATGGGCTGGCGATTGGCGCAGACGAAAAAACGCCGGGTCAGGCTACCGTGCCTTTTTGGTAAACGCGCACCCTTCGTTTTTTCGGTGTGGTGCTAACCCATTGATTTAATGTGGTCGTCTTTTAACAACCGAAAAACGAAGGGTACGCCATCCAAAACACGGCAAGTTACTGATATACTGGGGCTTGCCGCGTTTTTGGCACT # Right flank : GTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAACCGCCGTATTGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //