Array 1 8742-7663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLJF010000017.1 Methylosinus sp. KRF6 NODE_41_length_13111_cov_543.063266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 8741 29 100.0 32 ............................. GCCCGGAGCTGGTCAATCTGCCGCGCGGCGCC 8680 29 100.0 32 ............................. AGGCGACGCGGCTGCAAAAGCGAGCGACGGCC 8619 29 100.0 45 ............................. CGGGGATGAACCGAGAGCGGCGGCTCCGAGCGGTCGGCGGCCGAT 8545 29 100.0 32 ............................. AAGGATCACTGCCCTTCGTCATGCCGGATCAG 8484 29 100.0 32 ............................. GCCGAGATGAAACTGCTTATTGCCGCGTCGGA 8423 29 100.0 32 ............................. CTCGTTACAGGGGATCGAGGACAATCTCATCA 8362 29 100.0 32 ............................. GTCGTTCTCAGCGCGACGCCGGAAGTGGTCGA 8301 29 100.0 32 ............................. CCGGTGACAGCATGGATCGGCCCGCGGAATTC 8240 29 100.0 32 ............................. TGTCGCTCGTCTCGGCCCGCGCCTCGATCGCA 8179 29 100.0 32 ............................. TGGGCAGTCACCGCGAGCAGCGATTTCCTATT 8118 29 100.0 32 ............................. AGAATGTGAGCGTCGAGCTCACGAGCGGCCAT 8057 29 100.0 32 ............................. GTCGAGACGGCCGTGCAATATGGCGCCTATTC 7996 29 100.0 32 ............................. CGGCGAATAGCCCGATGACTTCGCGACGCAGG 7935 29 100.0 32 ............................. CTGCGGATCGCCGTCCAATTCGAAACCGAGAT 7874 29 100.0 32 ............................. GATGTAGCCCGGACCCCAGCGAAGTTTGCCGG 7813 29 100.0 32 ............................. ACACGTCAGGCGCGAATCAGTCCCGAAGTTCA 7752 29 100.0 32 ............................. GCGTATGCGGACTCTGAATTCGTGATCGGAGC 7691 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ============================================= ================== 18 29 99.8 33 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GATCGAGGAGGTGTTGGCTGCCGGCGGCGTCGAAAGGCCGCCGGCGCCGCAAGACTCGGTCGGTCCTGCTTTTATCGAGAAGGAGCAATCGGGCGATGCTGGTCATCGTGGTTGAGAATGCGCCGCCGCGTCTGCGCGGTCGCCTGGCAGTCTGGCTGATCGAGGCGCGCGCCGGCGTGTATGTCGGCGTCTATTCTCGCCGTACCCGCGAGATGATATGGGCGGACGTGGAAGGTGCCATCGGCGAAGGAAATGCGGTAATGGCCTACGCCGCGCCCAATGACGCTGGCTTCGTCATCGAAACCTGTGGCCAAAATCGGCGAATACCCGTTGATCTCGACGGCTTCACACTAATGCAATTTGTTCAGGAGCCCGGCGCCCCGCCGCCGGCTGCGCCAAGGCGTCGGTGAAGGGGGAGATGAGCAGCGGAACATAGCATCAACGCCGGTGCGCTGTTTGATATCGTGAAGAAGAATGAGATTCAATGCCTTCTGGCAAGA # Right flank : GTGAGGTGGCGTTGCAGCCCGTCGCCGTTTTCGTGTTCCTCGCAGGGGAGCCCGGAGCCCGCAGCCAGTCGGCATCCAAAATTGGCTCTAGAGCCAGACGGCGTGGGCGATGATCTGCGGTGGGAAGCGATGGCGCTTGTAGCTCGAGGTCGGTGGATTCATGATGCCCAAAATGGCCCGCCGCGACCTACTTGCCGGTTAACGTGACATCGCCCCTGCAGCCTCTGGACAAGCTTAACAATAAAATGTAAAAGCGTATGAAATTCGTTGTTTTTAGGAAGGTTTCGCATGCGCCTCAAACATGCCTTTATTTTCCTCGTCTCTCTATTGCCAGTAGGCAGCGGCAACGCTATGGCAGCTTGCCCAGCACTTCCGCATATGCTGACTAATGGGCAGGTTGCTGACGCAAATGCCGTTATGGCTGATCTCAATGCAGTTGCCAATTGCGCAGGCAATGCTGTTACAGCAGCAGGGGCGCCGCCGACCGGAAGTATTCCAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4269059-4268896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLJF010000001.1 Methylosinus sp. KRF6 CP023737.1_RagTag, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 4269058 32 100.0 32 ................................ GCCTGTCCAGAACAGCACATTGCCCACAGGAG 4268994 32 100.0 35 ................................ GCGGATGGCAAGGCGACTTTCGCGGCGACCGGCAA 4268927 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 34 GTCGCGCCCCGTGCGGGCGCGTGGATCGAAAC # Left flank : GGAAGTAGCCTCCGTGCTGATCCTCGTGACCTATGACGTGAACACCTCTGGACCGGGCGGTCCCCGCCGGCTACGTCGGATCGCCAAGGCGTGCTAGGACTTCGGTCAACGGGTTCAATATTCGGTCTTCGAGATCGAGGTCGATCCGGCGCAGGTGGACATTGCTGAAGGCTCGTCTCGAAGGAATAGTCGACCTCGAGGTGGATAGCCTTCGCTATTACTATCTCGGCGCAGAATGGCGGCGACGCGTCGAGCATGTCGGGGCCAAGCCCTCGACCAATCTCGGCGGAACGCTCATCGTGTGAAGGCGCCTGCCGGGCCGGCGCGAACCGGATACGCGCCTCGATTCGCCGGACGGTTCGCGCACCTTCTAGCTCATTGTTTTCACGTTAGGATACGCGCTCGAACAATCTGAGCGGATGCGACCCGAGCACATCCGCGCCGTCTTTCGCGCGCAAGGAATGATTTCACATGTCGAAACAGGGCGCTACAAGGTAGCG # Right flank : GGCATGACACCACTCGGCCAACGTCGCCGGACGTGATGCGACGCCAATGACTTGCGCATTCTGGCGTCCGGGGCGGCATCCTCCCGCCCCGGCCAGAATTCCGTAATTTATTGGAATCGCTATAAAATCGTCTCAGCCCGGCGAGTTCCACATCCCTTATGACACATGGCTGGCGCACCACGGAGCCTCTCCTGCCCCGCCCTACCCCATGTCGTGCGTCATGGCGCGTTCTATTATTGGCGGCGGCGACTGCCGTCGGCGCTCCCCGAATCGAGAAATTCTGCGACGCCGATTCTCGGCCTGGACGCCAGCAACCCCGGAAGAGCGCGCTACCTCGGGGGCCAGATTTTAAGCGCTCGCCGATCGCTGTTCTTTCCGGCCGCTCGAAGCGCGTCGCCTCGACTGCGATGAAAGAGACCGAGCGAAGTATCGAGGCCCGCGGCCACGATCGCCCGCGCCGCGTCGGCCGCGTCGAAGGAGCGGAATTCGGCGTCGAGCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //