Array 1 62747-61718 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAN01000109.1 Ligilactobacillus agilis strain SY111 sequence109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 62746 30 100.0 35 .............................. TTGACTAACAGCTACTTTTAAGCACCATTTTTACA 62681 30 100.0 36 .............................. AAAATTGGCAAGATTTCTATAATAGAATTTAGCCAA 62615 30 100.0 36 .............................. TAATATGGGTCGATTGGATAACAGCCCTAGTGGCAA 62549 30 100.0 37 .............................. AGACTTTAGACGACTACGATTACAGATACGAAGACCT 62482 30 100.0 37 .............................. GTAGTAACATCATCTAAGTCTGTTGCATCTGTTGTAT 62415 30 100.0 40 .............................. GATTGCATGTAGAAAATCTAAGACACCTACCAAGTTTCTT 62345 30 100.0 36 .............................. ACTTTAAGCGTGCCTAAAGTGTTTCCGATAAGCTCC 62279 30 100.0 37 .............................. AGATGACGAAAGAAGAAATCATGGGAATTGCTGACCC 62212 30 100.0 37 .............................. AGCAACTTCTTGGTCGTTTACGAATGAGTCGTCGTCG 62145 30 100.0 35 .............................. TATAATGGCAGACTTTAAGGCCGGCAAAGTTAAAG 62080 30 100.0 38 .............................. CGAATGAAGGTGATAGCGATGAAACAGAAGTATAACTT 62012 30 100.0 36 .............................. GCCATCCTTCAAAATCTTCACAATGACCTCATTCTC 61946 30 100.0 38 .............................. CCATAACCAAACTGACGCGTATGTCTTAAAGCACTCTC 61878 30 100.0 36 .............................. TATGATTATCAAAACTTTTTCTAAGAGTATTAACGT 61812 30 100.0 35 .............................. CAACCGCTTCGGCTATTGCCTGTTGGGATAGCCCC 61747 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 16 30 100.0 37 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGATGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGCAGT # Right flank : GATGCAAGCTGACGGTGAAAAGTATTCGCTTCGGTACGGGAAGTCACAAAAAGAAATTGCCGATGCTTACTTGGAACTAGTTAAGCGTGATTACTCTGGCAAACAAGCCCTTGGAGCAATGAATACAGAGCTACAAGGTTCGATTGCGTCAGGTGATGACTTTAAAGATGTAGTTGAAGTAGCCTTCCAAACTCTGGAAGGCTTTGGGATGACTGTTGATAAGAACGGTAAGCAGTTATCATCAACTAAAGAAATGACCGTTCAGACTAAAAAAGCAGTTAATACCCTAGCATACTCGGCTAATGTAACATCAACTTCGTTTCAGTCCTTAGGGGTTGGGATGTCCTATGTATCATCAACAGCCCACCAGGCAAAATTCAGTCTAGCGGAAACGGCGAGTGCAATGGGTGTGCTATCGAATGCAGGTTTAGAAGCAGACAAGGCTTTGGTAAAACTGGCCGCTTAGCGAGTAATCGCTTTGAACAAGCATTTTGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3806-2004 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAN01000040.1 Ligilactobacillus agilis strain SY111 sequence040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3805 29 96.6 32 ............................C TGCTCAATGTAGCCCCCGAACTTATTGTTTTG 3744 29 100.0 33 ............................. ATCCACACCTATCCAACTTGTCTGTTCCTCAAC 3682 29 100.0 32 ............................. AAGTTCCTTCCCCCAAAACTCAAGCTATCAAT 3621 29 96.6 32 ............................G CATATGTATATAATCACGATAAGACTAATGTA 3560 29 100.0 33 ............................. GTATACAGTTTGTGCCTTACTTTGATTTTTCAT 3498 29 100.0 32 ............................. TAAATCCGTATCTTGGTATTCGTGAATTTCAT 3437 29 100.0 32 ............................. AGAATCTTGTGGTCAAACCATGCTGTCAATTG 3376 29 100.0 32 ............................. GCGTTAACGACGATTAAGCTTGGTAGCGGTAG 3315 29 100.0 32 ............................. GATAACTTGCCAGAGATGGAAAGCTTAGAAAA 3254 29 100.0 32 ............................. GATTCTAAAATCACTAAAATTAGAACTTAAAT 3193 29 100.0 32 ............................. CAGTAGTAGCACCAAAAACCGGGAATACTCCA 3132 29 100.0 32 ............................. GAAAGTAGGCAAGACCGAAAATAACGACTTCG 3071 29 100.0 32 ............................. ATTCAAAAAATCGTTAACGGGAAAATGTATGA 3010 29 100.0 32 ............................. TACACAGAGTGGGTTCAAGTCGGTATGGCACT 2949 29 100.0 32 ............................. CCAGTTAGCATCTTTCTTAATACCTTCCTTAA 2888 29 100.0 33 ............................. TACTGTCTCTGATTGCTGAAAAATACGACACAA 2826 29 100.0 32 ............................. AAGACTGCGGCAAACATTGAAATCTTGCGTAA 2765 29 100.0 32 ............................. CCAATATCACTTTGACGATAGCACAGCAAAGA 2704 29 96.6 32 ............................C TTTAGGTGCTATGCCTAGTGTTTTAAATGCAA 2643 29 100.0 32 ............................. ATGGCGCTGTAACTACAAGCAACGCAAGAGCG 2582 29 100.0 33 ............................. TAGCAACAGCGATACACATCATGTAGATAATCA 2520 29 100.0 32 ............................. AAAATAACAATTACATAGCCAATTCCAACTAA 2459 29 100.0 32 ............................. AGCGATTGCTGGAATATTGGCGTTAAATGATT 2398 29 100.0 32 ............................. CCGCTCTTCTTGTGATTCCACGGACAGTAGAG 2337 29 96.6 32 ............................C AGGCGAAACCCAAGATACCGTAGCCAAGAAGC 2276 29 100.0 32 ............................. GGAATATTGCTTTTTAAGTGGAACGAAGATCA 2215 29 100.0 32 ............................. AACCAGTCCGTTCGTCTGTTGCGGACTTTAAT 2154 29 96.6 32 ..............G.............. CTTATCTCTTGAACCCTAACCCCTGCAGCAAC 2093 29 96.6 32 ..............G.............. ATGAAGAAGTTAACCGGGAAGCTGAAAGGCTG 2032 29 82.8 0 ..............G.......C...ATG | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.7 32 CTTCTCCCCACACTAGTGGGGGTAATCCT # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCAGTACATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAGGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACGGTTTTAAAAGAATATGAGATTGATAATACTCAGCCTCATAATTCTCTGTCCGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGATTGTTTACGAATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : AATTAAGCCAACAATTCATTGGTAAACATGCCATAATAAAATGTATGTAATTATTTTCCTAATTCCCTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTCACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCATGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTGGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTACTGTGATGGGTTAGATGTAATTGAGGAATT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.40,-11.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 611-1503 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAN01000073.1 Ligilactobacillus agilis strain SY111 sequence073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 611 30 93.3 36 ..T.C......................... TTTATCATATACTTTTACGATAACGTTATCTAAACT 677 30 93.3 37 ..T.C......................... TAATGCTAGAAATAGACTCCATTTATTCCGCCCCCTC 744 30 93.3 36 ..T.C......................... CACAAAATCAAATGAAATTGGCCAATTCTGAAATGG 810 30 93.3 39 ..T.C......................... GATTCTTAGTCGCAACTTTTAAGTGTTTAACTTCTCCCA 879 30 93.3 38 ..T.C......................... ATTATTCAACTACAGGTGCTCGCCAAAACACTGCTGAC 947 30 96.7 36 ....C......................... AAAGTACCTGTTTTACTAATAAATTAGTCCATAGAC 1013 30 100.0 36 .............................. ACTAAAACGGATAGCTCTAATCGGACTATCGGGGTT 1079 30 100.0 35 .............................. GCAATCGGGACCGAAGAATGGCTAAGAATTGTCGG 1144 30 96.7 35 ....................A......... TAGATATTAATAAATCATGGAATGAGACCCTAAGA 1209 30 100.0 36 .............................. CAAACCAATAAAGTTATGTATATCGGCTTCGATGAA 1275 30 100.0 39 .............................. GTTTCTTCGTTTTTGTGTACCGCTTCGCCACTCCTAAAG 1344 30 100.0 35 .............................. GGCGATTGCTTGCAGATTATCTTCCACACCGCTAT 1409 29 96.7 36 ......................-....... CATTTCGGGGTTGTCAGCTTCATCGGGATTGTCCAA 1474 30 93.3 0 .....................T......C. | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 96.4 37 GAATTTATTTAACTTAAGAGGAATGTAAAT # Left flank : ACAGTTGAATAAACGCTGACTATTGATTTTGTGGAGACACATTTTGCCAATCAAGTGTTAGTGTAGTTAGAGGAAGCCCCTTGGTAGCTGGATGGTGCCAAGGGGCTGTTTTATTACGTTTAATCGAACTAGTGTTTATTTTGAGCTGGAAGATTTTTAATATTGGGAACTGTACATTGAATTTTATGGTATCATTAGTAATGAACCCCTCCTACGTTAATTATTCTAGTCTACTTGGTAGGAGGGGGTTTTTATTAGCATACAAGAAAAAAGCTAGTTAGAAAATGGTTATATTAGTAACGTTACGTAATGGAGTATTTATATCTGTCGACCTAAGATAGGGTAAAATAGTGCTGGTATCGACAGATGACAAAAAGGTTGATATTAAAGGACTTGAAAGAATTTAGGGAAAAAAGTAGTATATAATTGAAGGTGAAATTTGGTGATAGACAGAATGTATGTGAAATATAGTTGGTAGTATGAGCTTTTGAGGGCGTAGT # Right flank : TTATTCAACTCAACGAATTACTAGAATAGAAGTAGTATGAGTTCAAACTAAGATTACAATACAATGACATAGTTTGAAACGTAATGACTATGATTTCTGCAAGTAGTATAAAGAACTAAGTAATTGTCATGATTGTGCCTTAAATAGGTAATTAAGACAATAGCTGGGGTAAGGGGGGATAAGGTTAAAGATGTTCCTATAATTCCTGTTCATCCTAATTGTGGATGTTAGTTATATCGTTAAGTATCTAGATACAACACTAGTCAAGTATCAGCCTAACTAAAAAATTCCAGAAAAAACCAAAACCTGCTCTAATTCTGTACAGGCAAGATATGTTGAAGGCAAAGTAGTACAGTACCGTTTATGTAATAATGGAGGATACGTACTTATTGACTTCGATTTAACCAATTATGGTAATCAAAAACATCATAAAGTAGTTTCCCATAAGTATAAACGAACTATATAAAAGCAAAAATGGTATGAATATAAAAAAGAAGTAA # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 5398-5824 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAN01000073.1 Ligilactobacillus agilis strain SY111 sequence073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5398 30 100.0 36 .............................. CATACAGAGTATTTTCCGTATTTGGAATATGGAACT 5464 30 100.0 36 .............................. ATGTTTTCTGAATTTCTGAACTCTCTAAGAGTTAAT 5530 30 100.0 37 .............................. TGCATTAACTTGGACGCTTATAACAGCAAAGGTGTTC 5597 30 100.0 37 .............................. GTGGCTGTCTTGACCCTACCCACATTAGTACGAATGA 5664 30 100.0 36 .............................. AATAGTTATTTGCTTGTGCAATTTCAAGCCAAGGGA 5730 30 100.0 35 .............................. AGCTGTCATTGACATGGAATTACTTTGTAATAACA 5795 30 96.7 0 .................T............ | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : AATGATGTCTGGGAGTTGGTGGAGAAGTATATTGGTTAATTATCATGCTCCTAATGTTTGTGGTAACACTGATTTACGTAAAGAAATTGATACACTGGTAATATGATTGCCGATAACTTCGGCTTAGATCTTTACGATGACTCCTTATTTTTATTTTGTAGGCGAAGAAATGATAGGTTCAAGGCTCTTTACTGGGATGGTGAAGGTTTCATACTACATTCACAAACGATTTGATAATGGACGTTTAATCTAGCCACGAACTAGTGAAGAGGTAACGCCCTGTTATGGAATGTTTACGTTTTTATTAGCTATAAGGTGCATATATCTGTCTACCGAAGGTAAGGTAAAATAGTACTGGTATCGACAGATAACAAAAAGGTTGATATTAAGGGACTTGAAAGAATTTATGGAAAAAAGTAGTATATAACTGAGGGTGGATTTGGTGATAGACAGAATGTATGTGAAATATAATTGGTAGTATGAGGTTTTGAAGGTGTAGT # Right flank : TTTAGCTAATAGTGACTTGAAATCAATATTGGTTATCGAAAAGAGGGCAGCTAGAGATAGTTGTCCCTTTTTATATTCTAAATTTAAAGATTTGCCTGAAGTGCAAGTGCTTCATAACAGCTTGCATGTAAATAAATATAAATAGTATAGGGAGACTTATATCGAAGCGTGCTTAGCCGAGATCGTCGGAGAAATGCTAAAGGGTATAGAAAAAGATATCATCCATAAGCTAGACGAGACGGTCTCCCCCCTCAAACGTCCCCAGGCTAGCCTTGATGAGTTGCTGCAGTTTGTCAAAGGGCCCGCTTTCTCAACAGGCGGAATTTATTTTTGGTTAGTAGATTATGTAGTGTTTTGAATTTTTAAGATATGGAAGTAAGAATCGCAATAAAAATGTTATCAGAAGTTTAAATTTAAGTTACTCAATATCTTCAGTTAGTTAATAGAGGTTGAATTCTATTCAAGACGGAATTTGAAATCGCAAATTTACAGTCTTTTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 11413-11625 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAN01000073.1 Ligilactobacillus agilis strain SY111 sequence073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11413 29 100.0 33 ............................. CACTTCCTGGAAACAAGATGGCTAGTGCCGGTA 11475 29 100.0 32 ............................. TAGCAATCGGCTAGCACGGCTTCATGGTTTAA 11536 29 96.6 32 ............................C CGGACCCTAGTGAGCTCTGCTCACACCCAAAA 11597 29 79.3 0 ........T........ATT...A..C.. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.0 33 GTTAAGTCCACGCATGTGGGGAAGATTCT # Left flank : AGGGCAGTGGCTCGTTCTAATTTTAGAGAGATACGTGATACTTTAAAATATATGCTGGAGTGGTCTGGCAAGAAGCTCATTTTTGTAGGTCGCTTTTATCCTAGTTCTAAACTTTGCTACGAATGTGGGTATAAAAATGATAACTTAACGTTAAAAGATCGTGAATGGGATTGTCCAAATTGTAACGCACATTTATTACGCGATTTAAATGCTGCAAAGAATATTGAACGTGAGGGCTTACGTATTCTTAAAGAAGAAATTACCAAAGAAAAGGGTAAATCTCCTGGAAAAATATAATATAAGTGACTATAATTAATAATCGAGGGTAGAATCGCTCTTTTAAGCTTGGTAAATAAGTCTGACCTCTACAGTCTAGTATATTATTATTAGATAGCAAGTCGTCTGTTCCCAAGAACCCAGTACATAGTTATTTATTACAAAGTAATATTTTTTAATGGACTTAGGTGACATGAACCTTGAAATATACACATTATTTTAGT # Right flank : TAACCGATATTAGGGTGCCTCTATTTTAAAATACTGCTATAAATATAACCAGCCTATGATTGAGTGCTCACGTTTCAATCATAGGCTGGTTTAGTTTAAGCTAGTTATCGTTGTGGTAGTAATTAATCAATTCTTCGTAGGTATCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATCCTCGTCTGTCACCTTAACTTCCTTGCAACGGTGCTTAGTAATGAAGCAGAGTTCAGGCGTTTTTAACAAGTCCAAGGTGAAATCGTGGTGATTCAAGTGGATATGTGCTAATAGCTGGGTGAAGCGGTCGTGCGTTGAATTTAGCTGGTAATCAAATGAGTAGTTAAGGGCAGGAAGCAGGTTTTCATCTGCTGGGTCCAAACCGACTCTGTCA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGTCCACGCATGTGGGGAAGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 14063-15753 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAN01000073.1 Ligilactobacillus agilis strain SY111 sequence073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 14063 29 100.0 38 ............................. CTGATATATTTAATCTTTTTGGCTAGTTTTCGGTTCTT 14130 29 100.0 39 ............................. CATACTTTTTTGTAGATATTCAAAGCGGGGTATTAATTA 14198 29 100.0 36 ............................. CGCCTTAACATAATTTGACTGGTAAGCAGATTGTGC 14263 29 100.0 36 ............................. CATTCTCTACAATGCTTACTAAATAAAAAAGAATGT 14328 29 100.0 41 ............................. CGTAGGATTAGCGGACGGTAATAACAGTAAACTGATAACTG 14398 29 100.0 37 ............................. CCTGACTTTAAGCACGTTTAACATTTCGTTTTGCATT 14464 29 100.0 38 ............................. CGCCTGTCACGTTTAAAGTCTGATACTCCGGTATAACT 14531 29 100.0 38 ............................. CAAGCCAACCACCGCAGCTATAAACGCTAAAGCGTCTT 14598 29 100.0 41 ............................. CCTTGTGGTTTAGCTAAGTCAGGGTTTTGTTCTAACTCTTC 14668 29 100.0 40 ............................. CATGATTGGTGATAGGCCGATGAAACTTCGGACAGCTTGA 14737 29 100.0 36 ............................. CAAAATCGAAGCTGACGGAATCGTACGGGTATTTTT 14802 29 100.0 37 ............................. CAAAATTTTTGATGAAGTAGTTAGGCCTTACATTAAG 14868 29 100.0 37 ............................. CAGGGTTGATGTTGTTGCGCTTTTCACCCTTGTGGTA 14934 29 100.0 37 ............................. CCTATGCGATTAAACCGCTTAGAGTATCTTAAATCTC 15000 29 100.0 35 ............................. CAAAGATATCGGTGAGCAAGCCGGATTGCAAATGG 15064 29 100.0 37 ............................. CAGAAGTTGGTGGAAGCCGGCAAGCTCAATCAGTGGG 15130 29 100.0 37 ............................. CGACGTCAAGAGATTTAGAGAAATCTATTATCAGCTT 15196 29 100.0 37 ............................. CCAAGTTAATCAAGAACACTCAGTCACATTCCAAGCC 15262 29 100.0 39 ............................. CCGGGTCGGTTAAGGTGCGAATAGGCAATCATTGGGCAT 15330 29 100.0 37 ............................. TAAGTAACGACCGCGATTTTAACAATAAGCTAACAGA 15396 29 100.0 38 ............................. TAGCAATTTCGCTAGCTGAGAAGTAAGGTTCATTATAT 15463 29 100.0 36 ............................. TACTAAAAATGAGTCCTCAAAACGTATTATTAGAGT 15528 29 100.0 36 ............................. TCGTCGCACTCGTAAGCGTCGCGCACGCAGAACAAC 15593 29 96.6 38 ........................A.... TGAGATAGCGATTTCGTCACTAGGTACTGCGTATTCAA 15660 29 100.0 36 ............................. TGTTGCTGAAATTACTTTAAGTGCAATGAATTTTGC 15725 29 89.7 0 .................A......A...T | ========== ====== ====== ====== ============================= ========================================= ================== 26 29 99.5 38 GATTCTATTTAACTTAAGAGGAATGTAAA # Left flank : TGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCGGTAACACCGGCGCGCAGGTTCAAATCCTGTACTCTCCTTAGATAGGGTTTTATAATGTTTTGGGGCGTTCTAAACGTTGCTATATCAAGCTTTATGATTTATAAACGTTTGGTAATGTAATGCTTTTTTAGAAAAAAGGTATCCTAACAATTATAATAACTTTCCCTGGTGAGTACCGTATATTTTATATACGGTATTTTTTTATACTCTCTTTTTGTTTTTAAAAATATGCAAGTGAGATAGGTATAACTTGTAATGTTAAAAAAACTTCAAGTATACATCTGTCGACCGTAGATAGAGTAAAATGAAGGGGACATCGACAGATGATGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTCACAGAAAAAAGTATTATGTAGATATGGGGACAAAAGTAGTGATAGACAGAATGCATGTGGAAACTAGTTGATAGTACAGAGATTTTAAAGGGTAGT # Right flank : TAATTGAAGAAGATGAGTATTATATGTGGAGAATTTAAAAAAGACATGGGTAGTTGATGGTTATACATGGCTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAAGAATTATAAATCATGATGGTGGACCTAATCATATGATACTCGAAGAAGTCAAAAAAGCTTATGCTGAAGGACGCAAGATTAATTAATGTCCAGTTATGCAAAGATAGTGTTATTTGGGCGAAGTGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACGATTATCAAGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAGTTAAATTAGCACTATGATTATAAGCTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //