Array 1 13643-10835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGUZ010000221.1 Limosilactobacillus reuteri strain AG_1_1_1 scaffold221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 13642 36 100.0 30 .................................... TGTACGAAACGAATAAAAGAAAGCCTAGCC 13576 36 100.0 30 .................................... TTAGTGGACGGCGCTTGGCCTATGGTTATT 13510 36 100.0 30 .................................... TATTCTCGTACTCAGGGGGGTCCAAATATA 13444 36 100.0 31 .................................... ATGGAAAGAATGCCCAACACAGTAAGCTTCA 13377 36 100.0 30 .................................... CAACCGCAAAAAGCCTGAAAAACAACGGCT 13311 36 100.0 30 .................................... CTACTAAGAGTTCTAAGACTATGCGTCACT 13245 36 100.0 30 .................................... CACTTTGTAAGTCAACCTTCGTCATATTGT 13179 36 100.0 30 .................................... AAGACTTTGGAAAGATTGGACGAAGCATAG 13113 36 100.0 30 .................................... ATGCAAGACTTTCTAAGTGAAGTTGAGCGA 13047 36 100.0 30 .................................... TACACTTAAATACTGATTTATTAATGACTT 12981 36 100.0 30 .................................... TAAAGCTGAGGGAAATACGGCAGAAGCTCA 12915 36 100.0 30 .................................... TAAAGCTGAGGGAAATACGGCAGAAGCTCA 12849 36 100.0 30 .................................... GAAAGCGAGGATGATTAAACATGGCTCAAT 12783 36 100.0 30 .................................... GAAGTAACAATGTTATTATAATAATGTAAG 12717 36 100.0 30 .................................... TAAACACGGGTTGCCCATCATTGCTGACGG 12651 36 100.0 30 .................................... AGCCATTGCCACCCAGCTCCTTTACGTTTT 12585 36 100.0 30 .................................... CTGTCATAAGAAGACTTGTCTGGGTCAAAG 12519 36 100.0 30 .................................... CCACAAAAGTAATTAATGGTATTCCCAAAG 12453 36 100.0 31 .................................... TTTAACCTAACAGTTACCACACCAAGTGACG 12386 36 100.0 30 .................................... TGATAATATTATCATAATCAAATTCTTGCA 12320 36 100.0 30 .................................... TAAAAAGCGTTAAATTGCGGGCAATTGCAT 12254 36 100.0 30 .................................... TAAAAAGCGTTAAATTGCGGGCAATTGCAT 12188 36 100.0 30 .................................... TACGCTCATGGCTAACCCCTGCTTATATTC 12122 36 100.0 30 .................................... ACTAAAGTGTTTCCAAGCTTGGCTACAGGA 12056 36 100.0 30 .................................... AAGATATTGATATTTATAACGAATTATTAA 11990 36 100.0 30 .................................... AATCAAATATGGCAAATGAAGTAACATACA 11924 36 100.0 30 .................................... ATGGTGTGCTGTTTCAATTTGGTAATAAGA 11858 36 100.0 30 .................................... AAACACACCAATGAATATCTGTTAGAGCGG 11792 36 100.0 30 .................................... TTATTTTGACTTTTTACTAGCTTGCAGTCG 11726 36 100.0 30 .................................... TAAAGAGTGGTAACGCTATGCAGTCTGCTA 11660 36 100.0 28 .................................... AACGCGCGCAAAACCGTAGTAACGCAGA 11596 36 100.0 30 .................................... TGCTACTATGAAGAAAATTCGGAACTTGGC 11530 36 100.0 30 .................................... TGCTGTTAATCCCGTGGATGGGGATGCTAG 11464 36 100.0 30 .................................... AAGATATTGATATTTATAACGAATTATTAA 11398 36 100.0 30 .................................... TCTACCGGCGGATGACGATTGTTGAGCCTT 11332 36 100.0 30 .................................... TTTTCAAGGTGGGAAATCATGGGTGGAAAG 11266 36 100.0 30 .................................... GATCAAATTAACAATGCAGTACGTTCTATT 11200 36 100.0 30 .................................... TCTCGATGACAGTGGTTAATTCCCTCGTTA 11134 36 100.0 30 .................................... CTAACTAACTCGCTCAAAGCAACAGTTGAG 11068 36 100.0 30 .................................... TTGGTAATTCAATGGCATACGGATGTTACT 11002 36 100.0 30 .................................... TCAAAAGCTTCGTCGGTAGCCTTCTCATCG 10936 36 100.0 30 .................................... AAAGCAATCAATGAAAACAGAATACAATAT 10870 36 91.7 0 ........................G...A......T | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.8 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : GAATAATAATTTAGCAACAATTTATTCAACGGAAATTGTAAAGTCAATAATAAAAAATTTAACAGAAGAGGATCGTCATTTACTAGATGCTGAAGCACGTCGACTTTATTCGAATGTTCAAGAAATTTTATTTATGACAGATTTACCGCTCGAAGTTCGCTATGATGGTGATATCAAACGATTATTAAATTATTGTAAGATTAAATTTTCACCATTAGTTCAGCAAAGTCCTTATGATATAATAAAAACAGATTTAAAGTTACATTTAGAATGTGCTGATAGTTCATGTGTTGGGTTAAGTAATGTCGCTAATTACCTAGATTCAGCTCAATTTAACGAACTACAACAACTAAACATTGAATTGAAAATTCCTGTTTTATTAATAGAATTCACAGAAATAGATAATCGTAGATACTATGGAAATGCGAATTTTTATTATATTGACAGGGATTTCGTTGATTGGAAGTTATAAACTATTAATTCAAAATTAGAAAATAATG # Right flank : AAATATTAGTCGAACTCACGGCTGAGAAAAATCTTAAATATGCTTCAAATTTCCCCGCCAACTTCAGCGGGGCTTTTTCATTTTCTTTTCAAATTAGTGTATAATATTTACTAAACCCATTACTAAAAGAGGTGAAAAATAATGGCAACAATTAAAGAAATTGCGAAAAAGTCAGGGTACTCACCAGCAACGGTTTCGCGCCTTTTGAATAATGACCAAAATTTATCGATCAGTCCAAGCACCCGCAACAAGATCATGACGGTGGCTACCGAGCTTGGCTATTGGAACAGCCACAAGAAAAACTCTCAGCAGCAACCAATTCGTCCTAATCTTGCTCTATTGTATCGGGTAAGCGGTAAAGAACAACTGCAAGATGAATATTTTGCGTTTTTACGCAATGCAATTATTAAAGAAGTCGATGAGGTGGGAGCACAGGTTGAGATCTTTAGTAATATCAAAGATTTAATTGCGACGGCTGATTCGTTCCAAGGATTTATTGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //