Array 1 82262-83419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021725.1 Neisseria meningitidis strain 95-134 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 82262 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 82328 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 82394 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 82460 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 82526 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 82592 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 82658 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 82724 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 82790 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 82856 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 82922 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 82988 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 83054 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 83120 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 83186 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 83252 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 83318 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 83384 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //