Array 1 4023-2103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBH010000109.1 Salmonella enterica isolate 2933_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4022 29 100.0 32 ............................. GCGTTGAGGCTGGATATTCAGAGTCAAAACTG 3961 29 100.0 32 ............................. CGGACTGACGTCGTTCTCGTCCGTGTAATATT 3900 29 100.0 32 ............................. GATGGCGGGATTGTAAAAAAGAATGGTTCGAT 3839 29 100.0 32 ............................. GGCTGTTGAGGCCGGATTCTGCAACGACTGCG 3778 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGGGTCGG 3717 29 100.0 32 ............................. AAAAACACAAAATCAACAATCGCCGCGGGAAT 3656 29 100.0 32 ............................. GAGGATTTGATTTTCCCGCGTTTTATATCAAT 3595 29 96.6 32 ............................T CGCCCAATACCCTTGGGTGAGTACCTGCCAGA 3534 29 100.0 32 ............................. ACTATCAACTCTCTCAAAATTGACCCCGCTCG 3473 29 96.6 32 ............................A ATACCACCAGAACCTATATCCATCCAGTTATC 3412 29 100.0 32 ............................. CGATATCAGACTTAGCCGTTCCCATTTCGATT 3351 29 100.0 32 ............................. TCGCTCAGCATGTTTGCAGGATTGGCCGTTAC 3290 29 100.0 32 ............................. GCCGTCAGCAATTACCCTTGCCGCCTCATCAA 3229 29 100.0 32 ............................. GTCGATCTCCGCAAGCAGGCGCAGGGGCGCGA 3168 29 100.0 32 ............................. GGAGTTACTTGTGTCGTGCTGGGTCACGGTAA 3107 29 100.0 32 ............................. CGCCAGGATACCCTGAAACGCTACCGTGTCCC 3046 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 2985 29 100.0 32 ............................. ATCTGTCCCAGCAGGGCGTCTGCACGTTTCAG 2924 29 100.0 32 ............................. GGGACTTGTTAATATTTCTCTCACTGACTACG 2863 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTATCCCCA 2802 29 100.0 32 ............................. GTGCAGCGCTACTACGCACATAAATACGGAAA 2741 29 96.6 32 .............T............... GCGGTAGGATTGCTCTTCGTGAACGTACGATT 2680 29 100.0 32 ............................. ACAACATCACCGCGACGGTCGTTTCGAACGCG 2619 29 96.6 32 ............................T CATACCACTCGCGCTCAACAGTTTTTTAATGA 2558 29 100.0 32 ............................. ATCCAACAACTGCTGTGTATCGATTACACCCC 2497 29 100.0 33 ............................. TCGTCGAATTGATCTTTTACGGCAGCAGGCAGC 2435 29 100.0 32 ............................. TGGCGGCGGCCAGTGGCGCGCGAACAATCGCA 2374 29 100.0 32 ............................. GCGTATCCCGAAATCACGTTCAAAAAAAATTC 2313 29 100.0 32 ............................. TCTGGAAATGTTGCCAACATTCCAACCAGTAA 2252 29 96.6 32 ...........................T. GCGTGTAGTGGTGGGTATATGCTCGCCGCGGC 2191 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 2130 28 86.2 0 ...............A.AA......-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 79669-78418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBH010000016.1 Salmonella enterica isolate 2933_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79668 29 100.0 33 ............................. CGCGAGAAAGAGATCCGCGCTGCGTTCGCTGCC 79606 29 100.0 32 ............................. GTGAGCCTGATTGAAACAATGCTCAAGGCCAA 79545 29 100.0 32 ............................. GCAGAGGGCGAAAACGGCTGCTATGCAGGCGT 79484 29 96.6 32 ............T................ ACGGTCAGATCGAAAAAATCCCGATGGTGAAA 79423 29 100.0 32 ............................. TCCGCTACCATTTGGTTTACGTCGGTTTATAT 79362 29 100.0 32 ............................. GGAATATGGAAATGCGTTAATGGAGATTGGTG 79301 29 100.0 32 ............................. TTACGTAGAGCAGATAAAATCCAATCTGGGGT 79240 29 100.0 32 ............................. GTGAAAACGACGGCGACGGAGCAGGGGAACGC 79179 29 100.0 32 ............................. CAGCAGCGGAATAAAACGAGGCGCGGGCGATC 79118 29 96.6 32 ............................A TGAACTCCACCATTAGGACGCCAATTATTACC 79057 29 100.0 32 ............................. AGGTGCAGGCGCAAATACGCCGCCCCTGCACC 78996 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 78935 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 78874 29 100.0 32 ............................. ATAACCTGCAATTCAAAAATGCGGATGTGATC 78813 29 100.0 32 ............................. ATTCAGCGAACGTCTCCGGCGACATTGATCCG 78752 29 100.0 32 ............................. GTATTCGGCGACGTTCTGTTTATTTTTTATTA 78691 29 100.0 32 ............................. TATCGAGGGGGAACCATCATGTCTGGTCATAA 78630 29 100.0 32 ............................. CAACTGGGGAATTTGCTGAACTCGGCAGAAAC 78569 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCTATTGCTC 78508 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 78447 29 96.6 0 A............................ | A [78420] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //