Array 1 967337-971836 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQA01000001.1 Moraxella atlantae strain NCTC11091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 967337 36 100.0 34 .................................... AGATCGCCGTAAATACACAATTCTGACAATAGTA 967407 36 100.0 33 .................................... GCAAGCAGCTTGACGCGCTTAAAGCTGCCCCTG 967476 36 100.0 34 .................................... GCTAGGGTTCGGCTAATCGTTGTCGCAGTCCAAG 967546 36 100.0 33 .................................... AAACTGTAGATGAGTTTGTCATCTACAGTAAAG 967615 36 100.0 34 .................................... TTAGAAGGAGCCTGTATTTGTTCGAAACCTCTTA 967685 36 100.0 34 .................................... ATATTTCTTCTCTTCAACGTGAACAAAATTTTGA 967755 36 100.0 34 .................................... CGACCTACGTCAGCCTGGTTAGCGTGGGTGAACA 967825 36 100.0 33 .................................... CCACCAGTTCCAAGCTCTGTGCAGGCTCTGTAA 967894 36 100.0 34 .................................... ACAGTCGTTTAGCTTATATTGCCCGCCCTCTGCT 967964 36 100.0 36 .................................... CACCTTAACGTGCATGACGAGTGGGCAGGTATTTAT 968036 36 100.0 33 .................................... TGTTTGTCTTGAAAGTGATTCGCCATTGCTATT 968105 36 100.0 34 .................................... GGTAGGCCGTCAGAGTAATCAGTAAAGTCAAGCT 968175 36 100.0 34 .................................... ATAGTCATCAATGCAATTAAAAACACATTATGAA 968245 36 100.0 33 .................................... CAAGATTTTCAACATCCCCATACACTGTTTTAA 968314 36 100.0 33 .................................... TAATCACCGCCGCGGTCATGGAATGTGATAGCG 968383 36 100.0 34 .................................... GCCTCATTATCATCTTCAGTGTAAGAAATTTGAG 968453 36 100.0 35 .................................... TATGCAGCAATATAATAGTTATCGCCGCGGTCTGT 968524 36 100.0 33 .................................... ATCTGCGATACTTTCATCAAAGTAGCCGCAAAC 968593 36 100.0 33 .................................... ATCTTTAAAACCGAGTATTTAACTCGCATCTTA 968662 36 100.0 34 .................................... AGTTTAATTACTAACTCGTGGGTTGGTAATTTGC 968732 36 100.0 34 .................................... TCTGGTACATCAATTTCATACATCACCTGCTGAT 968802 36 100.0 35 .................................... TCAAGGCTACGGCCTTGGCACGAGCTTGGGCTTTG 968873 36 100.0 33 .................................... AAACTGTAGATGAGTTTGTCATCTACAGTAAAG 968942 36 100.0 34 .................................... TTAGAAGGAGCCTGTATTTGTTCGAAACCTCTTA 969012 36 100.0 34 .................................... GCTGCTAAGTTTAAGCTTGGTGAAGGGGTTAAGG 969082 36 100.0 33 .................................... TAACTCCAATGAAGAAAGTACGACGGAGTAAAG 969151 36 100.0 33 .................................... ATCACTTGATAGAAGTAGTGAGCAAACTGTTCA 969220 36 100.0 34 .................................... GTACATGCTCATCTCCTCTTTTTTCATAGTTAGA 969290 36 100.0 34 .................................... TTTTCAACCCGTTGATCAACATCGCATCAGTTAC 969360 36 100.0 34 .................................... CTTATGTATTAAGGATAGAGGATGATTGTGTTTT 969430 36 100.0 36 .................................... CTAATATTGTGACAGGGTTGATAAAAGCTTCTCAGA 969502 36 100.0 35 .................................... TTCTGAACCACATCCAGAACGAAGGCTCGGCTGAT 969573 36 100.0 32 .................................... TTCTTTTTTTCCTTTTTCAAGGAGTAATTGTG 969641 36 100.0 34 .................................... GTACATGCTCATCTCCTCTTTTTTCATAGTTAGA 969711 36 100.0 32 .................................... TAACTGTTGATGATAGTTTAAAACTTTTGTAT 969779 36 100.0 33 .................................... GCATGCAACATCACCGCCTCGCGGGAAGTGGTG 969848 36 100.0 33 .................................... TGGTTCGGTTTGGTGAAGATGACCGTCGTTGCA 969917 36 100.0 35 .................................... TAATACAGCCTTATTTGACACATACACAGGAATAC 969988 36 100.0 33 .................................... CCCTTGCGTTTTCTAGGTGATGATAAAGTGGTT 970057 36 100.0 34 .................................... ACAGTTGCTTTTTAACTCCAATGAAAAGAGTACG 970127 36 100.0 34 .................................... TTGTTCTTTTAGATTAAAGTCTTCACTTAGGTAG 970197 36 100.0 33 .................................... TACATCGCTGAACGAGGACCTGAATTGGCGCGA 970266 36 100.0 33 .................................... AATCCGCCAGTCACAGATGTAGAAGCTACACCT 970335 36 100.0 35 .................................... ATACTACTAATACTAATTATCATACTCCTTTTAAA 970406 36 100.0 35 .................................... TCACAGCTTACCTCTGTGACCAAACGACCAGCAAA 970477 36 100.0 34 .................................... ACAGACAAAGAGACCCCTTTGCTAGTCACGTTAG 970547 36 100.0 36 .................................... ACATAGATTTTGCGTTCTGCCTCATCGGCATTGGCA 970619 36 100.0 34 .................................... ACTACTAATTTCATTTAGTAATCTCTTCATCAGT 970689 36 100.0 33 .................................... CAACCGCAATCGCGGCTACCACGTCGCGCGTGC 970758 36 100.0 34 .................................... CTAGTTGTACCGTTTCTAGTACATGTCAAAAATT 970828 36 100.0 33 .................................... GAACAGGTGTTCTGGCTGAGCTACCAAAACTTC 970897 36 100.0 33 .................................... GACCATTGGTCAGGTACTGATAAGGAGGTTGTG 970966 36 100.0 34 .................................... ATAAAAACGACGATATCGCCGCGTAGGTGCTTAA 971036 36 100.0 35 .................................... TATCGCATTCCAAGCGCGTGAATAGGCGCCCCACA 971107 36 100.0 33 .................................... CTGATTTTACGCATAGCGTATCCCCTTTTGTTG 971176 36 100.0 35 .................................... GCAATAGTGTTATAGTCCGTTAACCACCCGTCTAT 971247 36 100.0 34 .................................... AGCTGGGCTTAGGACACCATACAAGCCTTTAGCC 971317 36 100.0 35 .................................... GCGACATGATTTTGATAACCACGCGCGTTTTCTAA 971388 36 100.0 33 .................................... AGAGATAGTCCGAGCAACTATCCACGAAATAGG 971457 36 100.0 34 .................................... CGCACTTTAGCGGCTTTCACCGCCTCGGCCTTGG 971527 36 100.0 31 .................................... GTCAGCAGTCGCGTGGCTAATTACCGTATAC 971594 36 100.0 31 .................................... GTCAGCAGTCGCGTGGCTAATTACCGTATAC 971661 36 100.0 33 .................................... ATTTCTTTCGCTAAGCTTTCGCGCGCGTCGTCG 971730 36 100.0 35 .................................... CCATTGATATCTCTCACAAAGTGAACTTCATTGTA 971801 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 65 36 100.0 34 GTTCAAAGCCTTCCCCGATTCCTAGGGGATTAAGAC # Left flank : CCATTTACGGCTTTGTTTTTTATTTGGTGGATAGTGGTGTTAGTTAATAACGTAAGTGTTGGAAAATAGCGAGGTTTTTGCTATAATAGGACTCGCTAGTTTTTATCTGAAACGACAACTGACCTACAAATGCGAGAACGCAGGTTGCCGTTTTGAAATCGTGAATGAGAGATACACGACCCAGCGATGTTCGTGTTGCGGTGAAATCACCGCCAATAGTCCGAAAGGTAGAAAATCGCTTGGAATAAGAGAATGGATATGTGCTTCGTGTGGCACATGGCATGATAGAGATATCAATGCCAGTAAAAACATTCTTGCGGTCGGGCTTGACCGTCTTGTAGAAGGAATCCCCTTGCTTTAGCAAGGGGAGGAAGTCAAATTTGCCTTGAACTGTATAAAAACAAAAATTGGTCAAAAAATCACCAACTTTTTAGTTGAATTTTGTCTACTAAAATTTGTTTTTAACTGGTTGTTTTTATTGATAAATAAAAATAAGTGCA # Right flank : CTGATTTTGCAAAGTACGCAAATCCCGCTCGCAAGACGAGAGCTATGCTCGAAGTGAAAAACATGGCTATAATTGAAATTATTATTTAGGAAAGATAACCTATGAATGAAATAAATATATATACGACAGGCACATACAGTACTGCTACCCAAAAAGGCGGTTGGGGTGTTCTCATACAGCAAAAGCTAGCAGATAAGCAAGAACATAAGATTCAGACAATTTTAGGTAGCGATACGCACACCACAAACAATCTAATGAAACTACAGGCACTTATAGAAAGTTTGAAAGCATTAAATTTTAACGAATTATCAAAATATAAATTTTTTCTAGATTCCCACTATTTAATGTTGTCATTGAGAAATCGTGAAAAATATGAAAATACGAATTTTTCAAAGGTTCAAAATGCTGAAAAATTACAAGAACTTTATCGGGTATTAGACTCTAAAGATTTAAAACTCAATAATGATGAGAGTTTAACAATAAAAAACTTTTTGGTATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAGCCTTCCCCGATTCCTAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 1590340-1589891 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQA01000001.1 Moraxella atlantae strain NCTC11091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1590339 29 100.0 31 ............................. GTTGCATATGCCATACACTCAGATTTTGGTA 1590279 29 100.0 31 ............................. GGTCTATCATGCCATCGCACCCACGCGCACG 1590219 29 96.6 31 ............................T ACTAATATGGGATAAGGGCAATGTTACACCC 1590159 29 100.0 31 ............................. ATCTCACCAATGATAAAGGCGGCTAACATCG 1590099 29 96.6 31 ............................T TTTGCTGTGGTGGTCTTGAGTTTGTCGCGCA 1590039 29 100.0 31 ............................. CCGCCAAAATGAACATAACGCAGACATTATG 1589979 29 100.0 31 ............................. TTTGAGTAGCTAAATAACGTTCTATACCATA 1589919 29 82.8 0 A..C......A.G...............T | ========== ====== ====== ====== ============================= =============================== ================== 8 29 97.0 31 CTTTACCGCCGCATAGGCGGCTTAGAAAA # Left flank : GCTGGTCGATTATGTGCATTTGTCGTCCATCAAAGAAGTGGGTGATAAAGCGACTGGCAATGTCGTGGTCAGACGTTATCGTTATAAGGATTTTGACAAAAAAGTGACAGCATTTGCCCAATTTAAAGGTATTAGCCAAAAAGCGGCGTTAGCGCATTGCCGAACGCATAAACGCCCTATCAAACGCTATCCGTTTATTACCTTAAAAAGTGAAACCAATCACTCTGATTTTAAATTATCGATTTGGCAGGAGGCAACTCAACACCCCAAAACAGGGGGATTTAATACGTATGGAATCAATAATCAGTCCAATAACGTGACTGTTCCGCATTGGTAATCAACAAAGCAAGCAAAAATAAGGGTGAATAACCCTTATTTTTTACTCTATAAAAAAATGTTTAAATTTCAATAATTTATGGCAGGGTGGAATCGGTAGGGTAAAAAAGGGTTTTTTACTTGGTAAGCCTTGTTATGACTGGCTTTTTTGCGTTATAATTCTA # Right flank : AGTACCTTATTGCTGGCTTTAAGTGCTTTATTTAAGTGGTTGCTAGGTTTTTACCATTGGCATTGAATATCACAACCGCACGATCAAACATCGAGTAAGGCAAGCAATTAGGCAAAATTGTAACTTCTCCAAAAACTGGAAAATCACTTTACAGTCTTTGCGTTAGCATTTTTTTACATTGATAACGGCTGTGTTTGATGTCGGCATGGTTTTAAAAGCACCACAAAAAAGACGGCTCGTTGCCTAACCGTTTTTTAAAAAAAATTATTCGTATCACCAAAGCTATTTAGCGCGGCTTATTGCGGCGTAGATGGTTACTGCGTCGCGCTTTGAGCGGTTTTTGCTGCTGGCGTTCTTGCCGACGTTTGGCAATGCCATACAACCCTGTGCCTTGACGTGGGCGCAGACCGACTAAGTTTGCCAAGCGGTCAATCTCGCTGCGGTCAAGCTCTAGATATCGCCCTGTGCGCAGCTCGCGCGGTAGGCTAACGGTACCATAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : CTTTACCGCCGCATAGGCGGCTTAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //