Array 1 646560-648104 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059445.1 Campylobacter fetus strain CFF09A980 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 646560 30 100.0 34 .............................. TCATTTTTGTCATCAGGACCAGGAGAACTGACAC 646624 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 646690 30 100.0 36 .............................. TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA 646756 30 100.0 36 .............................. TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA 646822 30 100.0 36 .............................. AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT 646888 30 100.0 36 .............................. GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT 646954 30 100.0 36 .............................. TGGGGATTCGATGAAATTTTTAACTATATAGCATTC 647020 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 647086 30 100.0 36 .............................. TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC 647152 30 100.0 36 .............................. TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA 647218 30 100.0 36 .............................. ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC 647284 30 100.0 36 .............................. CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTA 647350 30 100.0 36 .............................. TTTGAAGTGCACGACGCTATAACTAGAACACGGATC 647416 30 100.0 36 .............................. ATTAAAGCCGAATTACTCCCATTTTTTTTGACTTGG 647482 30 100.0 36 .............................. TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA 647548 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 647614 30 100.0 36 .............................. TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC 647680 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 647745 30 100.0 36 .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 647811 30 100.0 36 .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 647877 30 96.7 36 .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 647943 30 100.0 36 .............................. CGTTTTATTTCCTTGGAAAGCAAGGTATAAGCGTAG 648009 30 100.0 36 .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 648075 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 24 30 99.9 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CAAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGTGACCACATTATAAGTCAGGCTCAAAACATAGCTAGAGTAAATCAGTCTAGTAAATACGGAGTAAAGCATTACAAAGTATTAGCTAGGATAGATAGCCGTACAAGCGATATCTGTAGAAGTATGAACGGACGCATAATCCCAGCCTCGCATATAGAAGCTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTGGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACTGGGGTTGAGAGAGTAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 665785-667398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059445.1 Campylobacter fetus strain CFF09A980 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 665785 30 100.0 36 .............................. TCGTTAATATTATTTTTGTTGCAATGTTTGCATTTT 665851 30 100.0 36 .............................. TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG 665917 30 100.0 36 .............................. AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGG 665983 30 100.0 36 .............................. TTGCGCGGAGATAAACACTCTTAGCACGGAATTTGA 666049 30 100.0 34 .............................. TTTTGTCATCAGAACCAGGACCAGGAGAACCTGA 666113 30 100.0 37 .............................. TGATGTATTGACTTTGAAGATAGCAATCATAGGCAAA 666180 30 100.0 36 .............................. GGCGCAGCCGTAGAATTAGGGCTTAGTTTCGGCAAT 666246 30 100.0 36 .............................. CTTTTTTCAAGCTCGATTTTAATATCCCATTGCGCG 666312 30 100.0 36 .............................. TTTTTACCGTTTTGAAAATCAACAAAAAGTTCTATA 666378 30 100.0 36 .............................. TCATTAAAACACGATATTGTGATCCGCCTTTCATAT 666444 30 100.0 37 .............................. CCTTTATAATCTATACTAAAACCATTTAATATAATAT 666511 30 100.0 36 .............................. GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA 666577 30 100.0 37 .............................. GGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTAT 666644 30 100.0 36 .............................. CCATTTAGCATATCATATACTTGATCTGCCATTTAT 666710 30 100.0 36 .............................. ACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCA 666776 30 100.0 36 .............................. TCTGATAAAATGTATTTGGATCAATACCTAAAGCTC 666842 30 100.0 36 .............................. TCGTAATCTTCTTCCATAATTTTAAAGTATAGATTA 666908 30 100.0 35 .............................. TCGAATCCGTATGTGTTTACAACTTCTGAATCTTC 666973 30 100.0 36 .............................. TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT 667039 30 100.0 35 .............................. TCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAG 667104 30 100.0 36 .............................. TCGAAATACAAGCTCGCGCAAAATGGAATCCATTCT 667170 30 100.0 36 .............................. TTAAATCTCCTTATCGCTTATTATATTTATTAATTT 667236 30 100.0 37 .............................. TTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTA 667303 30 100.0 36 .............................. ATGGAATATTTTTGTTAAACGCATTCATACAAAATT 667369 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CGGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGCCTGTAGCAATATATTTAATATTTGCATTATATCTGCAAACTTTTAAAATAAACTTAAAAAAGGATTAAAATGATAAAAAAATTAACAGATAAACGGCTATCTGAAATAACAAAAATTCCGTATGGAACTATAGCAAGCTGGAAGAGATCTGATGGTTACACAAAAGATATATATCTTTTCTTTAAAAATTTAGACCCGGAATTCTTAATAGAGAATTTTGGAGCCAAAACTCCTATAATTCCTTTACGGGATAAAGAAGTAGTAGGCGCAATAGGTATTTCGCAAGGCACCCTGTATGGCTGGAAAAATGGGAAGGGGCATAGAAAAAAGCTATATGATTTTATAGCGCAATTTAGCGCAAAAGAGATTTTAGATATCTGTGCAAAAGAAAAAGATAGCATAAATGATAAAACGCTCTCAAAAATAACTAAAATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //