Array 1 40306-39566 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP029644.1 Corynebacterium diphtheriae strain BQ11 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence             	Insertion/Deletion
==========	======	======	======	====================================	============================	==================
     40305	    36	 100.0	    28	....................................	CTCACCGAGAAGGTGAAGCTTTTTGATA	
     40241	    36	 100.0	    28	....................................	CGGAATGGCTAGGGGAGCTGTGGGAAGG	
     40177	    36	 100.0	    28	....................................	TCCCGCCAGTGCTCAACCACTACTTGCC	
     40113	    36	 100.0	    28	....................................	TAGCCGCACGTGACTCCTCCACAGCGGA	
     40049	    36	 100.0	    28	....................................	CGATGTACTGAAAACCCGCATGCGGGTG	
     39985	    36	 100.0	    28	....................................	GCAACCGGCGACGGTAAATGGATAGACA	
     39921	    36	 100.0	    28	....................................	CTTGATGTGGGGTTCGTGAAAGCGGATG	
     39857	    36	 100.0	    28	....................................	ACTGGTTGCTTTGCATCGAACGGATCCA	
     39793	    36	 100.0	    28	....................................	CGATGTACTGAAAACCCGCATGCGGGTG	
     39729	    36	 100.0	    28	....................................	TGCAGCGTGTGCTGGCGCCCGAGCAGAA	
     39665	    36	 100.0	    28	....................................	CGCGGTGTAGGCGATGTATGGTGACGTG	
     39601	    36	 100.0	     0	....................................	|                           	
==========	======	======	======	====================================	============================	==================
        12	    36	 100.0	    28	GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC	                            	       

# Left flank :   ACACCATTACTTCATCAAGTACTGCGTCAGTGACCGCGGAAATCGTCTCATGGGAGATGTCCACCCGCATAACAGTGGCCATATGGTGCCTGATATCGCGCACGGTCATCCCGCCGGCATACAAGCTCACGATCATGTCATCGACATCCGTTAAACGCCTCGAGCCCTTGGGAACCATCGTCGGCAGGAACGTTCCGGCCCTGTCTCTGGGCACGTCTATGGTAACTGGCCCGTCGTTGGGATCAACAGTCTTTAGGTAGGTGCCGTTGCGATAATTGTAGATCCCAGCAGCAGCTTTAGCTTCGCGATTTCAGCATGAGCAAGCAGCTTTTCCTCAGGTCGCGTCAATCTTGGCCTTATCAGCCGAGTCTCGTCTTACCACAGTAGTCATTCTGACTTATCTCCTTATGCGGAATAGAATCCCAAACACAAACCATCAGGCACCCTCATTCCCAAAAACCCTGATAAACTTCTCCTACGGTTCATCCCCGCTGGTGCGG
# Right flank :  AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.20,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.64,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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