Array 1 292551-290341 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCY01000003.1 Parabacteroides merdae strain BIOML-A18 scaffold3_size383214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 292550 32 100.0 33 ................................ ACGAACATGAGCATAAGCTTCAGCCCATTTTTT 292485 32 100.0 34 ................................ TCAAAACTACGGAACATGATAAAGTTGCGGAGAG 292419 32 100.0 34 ................................ AGGCATATTCAAAGCATCATAGCGAACATTAACG 292353 32 100.0 34 ................................ TCGCCATCTATTGCGCTCAATGGAGAGGGTAATA 292287 32 100.0 35 ................................ ATTTTTGTTTGGATCGGGAACATCATCGGCATAAA 292220 32 100.0 34 ................................ TAGAGATCTCCTGTATGCCTTTTATTGCCAAAGC 292154 32 100.0 34 ................................ CAAGCCTTGCAATCTTTATTACAACCCTTGGAAC 292088 32 100.0 34 ................................ TATGAAAGAATATACCGTTATATGTTTTATAACA 292022 32 100.0 33 ................................ AGGAAGGTGGTGCGTTAAAGCCGTCCGGTCTTG 291957 32 100.0 34 ................................ TTGACATCACCAATTTTATTAAAAACGTTTGCCA 291891 32 100.0 35 ................................ CCTTTAATACGACATACACACCACTACCTTGAAGA 291824 32 100.0 35 ................................ ACGGCGACGAGCCTGCATAATACGGCGTTTAGCAG 291757 32 100.0 34 ................................ TGCCAATTAGAATCAACACGAGAAACGGGTATGC 291691 32 100.0 34 ................................ TTAACAATCGCCGTTTTGATCTCGAGTGTGAAGA 291625 32 100.0 34 ................................ CTCTGGTCAGAGCCCTATGGATCGCGTTTATATG 291559 32 100.0 34 ................................ AATGAATATATTTATACTTTAACAGAACGTTTGG 291493 32 100.0 34 ................................ CCCCTGAACTTAAAGTTGATGCGGATAGAAATAC 291427 32 100.0 34 ................................ CTTTAATTGATGTAGAAACGAAGATGGCTTTAAA 291361 32 100.0 33 ................................ AGAAACAATGCTACTGTAGATAAAGTAAGAATT 291296 32 100.0 34 ................................ TAATGGGGGAACCGTTTTACAAACAGCCAATATA 291230 32 100.0 33 ................................ AAGAGAAGGATTGCCTAAAATCTCATCTCTACG 291165 32 100.0 34 ................................ ACGACTGATTTAGGCCGCATTACTCCGGTATTTA 291099 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 291034 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 290967 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 290901 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 290836 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 290769 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 290704 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 290639 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 290572 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 290504 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 290438 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 290372 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.5 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 300043-298231 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCY01000003.1 Parabacteroides merdae strain BIOML-A18 scaffold3_size383214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 300042 32 100.0 34 ................................ GCAATGCCTCCAGGAGACGGGAGCCAATCAGAAG 299976 32 100.0 34 ................................ TAATCGGGGTACAACAACTCGAGAAATAGGTAAT 299910 32 100.0 34 ................................ CAAATAGAGCGACCAGCCTTAATACCAAAAAAAC 299844 32 100.0 35 ................................ TCCGAAGGTGGTGCTTTATCTGAATCCGGTTTGGG 299777 32 100.0 33 ................................ AACCTCAAACATTTAAGTAATGGCAAACGTTTT 299712 32 100.0 35 ................................ ACGACGCCGAGCTTGCATAATACGACGTTTAGCAG 299645 32 100.0 32 ................................ CGTCACCCGGCAATGTTGCGAAAAAAGTACTA 299581 32 100.0 35 ................................ CGTAAATACGGGAGTAATACGACCAAGGTCAGTAG 299514 32 100.0 34 ................................ ATCAGAAGGAAGTCGCTTAACGACAACTCGATGA 299448 32 100.0 33 ................................ AGGATTGAAAGAATCAAGACGCTCGCGATAAGT 299383 32 100.0 33 ................................ TTAAGGCCCAGGTGTCTGAAACTTGGTCTCGTA 299318 32 100.0 34 ................................ CAAACGACACAGTTACCATTAGACTCATAACCAG 299252 32 100.0 36 ................................ GATGATTGCTCATTCTTATCCCCTCATGCCATCAGT 299184 32 100.0 34 ................................ CTTATAGCTAAATCCACGGAATTGATTAAGCTCA 299118 32 100.0 34 ................................ CTTAATGGTAAAAAGACATATAATCGTTGGATAA 299052 32 100.0 33 ................................ GCTATCTCGCGTGTGGCGAGTATGGCTCTAAAA 298987 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATG 298922 32 100.0 34 ................................ TTGAAAAAACATTTCGCAAACAACTGAAAAAGAT 298856 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 298790 32 100.0 32 ................................ TGTTATGTCGCGTTTAAAGGATGCTGGTTTAA 298726 32 100.0 32 ................................ TAAAATAGCTAAAAACAACATTTGGGATATGA 298662 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 298595 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 298531 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 298465 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 298398 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 298333 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 298262 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //