Array 1 66353-66981 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDMQ01000048.1 Pseudomonas aeruginosa strain Pae_CF67.05h CF67.05h_contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66353 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 66413 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 66473 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 66533 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 66594 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 66654 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 66714 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 66774 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 66834 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 66894 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 66954 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21757-23105 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDMQ01000001.1 Pseudomonas aeruginosa strain Pae_CF67.05h CF67.05h_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21757 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 21817 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 21877 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 21937 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 21997 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 22057 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 22117 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 22177 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 22237 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 22297 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 22357 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 22417 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 22477 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 22537 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 22597 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 22657 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 22717 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 22777 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 22837 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 22897 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 22957 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 23017 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 23078 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33625-31980 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDMQ01000001.1 Pseudomonas aeruginosa strain Pae_CF67.05h CF67.05h_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33624 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 33564 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 33504 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 33444 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 33384 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 33324 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 33264 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 33204 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 33144 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 33084 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 33024 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 32964 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 32903 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 32843 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 32783 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 32723 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 32663 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 32603 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 32543 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 32483 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 32427 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 32367 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 32307 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 32247 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 32187 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 32127 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 32067 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 32007 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //