Array 1 95632-94810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUVY010000002.1 Escherichia coli strain R1023 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95631 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 95570 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 95509 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95448 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95387 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95326 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95265 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95204 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95143 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95082 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95021 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94960 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94899 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94838 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112931-111133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUVY010000002.1 Escherichia coli strain R1023 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112930 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 112869 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 112808 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 112747 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 112686 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112625 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112564 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112503 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112442 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112381 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112320 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112259 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112198 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112137 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112076 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112015 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 111954 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111893 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111832 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 111771 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111710 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 111649 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111588 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111527 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111466 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111405 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111344 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111283 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111222 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111161 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //