Array 1 84857-87537 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLR01000012.1 Listeria monocytogenes strain NCTC 10887 NODE_12_length_92825_cov_29.4164_ID_4274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 84857 36 100.0 30 .................................... CGAATACCTTTGTCAAGAAGCAAGGCGTTA 84923 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 84989 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 85055 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 85121 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 85187 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 85253 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 85319 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 85385 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 85451 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 85517 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 85583 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 85649 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 85716 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 85782 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 85848 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 85914 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 85980 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 86046 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 86112 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 86178 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 86244 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 86310 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 86376 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 86442 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 86508 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 86574 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 86640 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 86706 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 86772 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 86838 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 86904 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 86970 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 87036 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 87102 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 87168 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 87234 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 87301 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 87367 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 87433 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 87499 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [87524,87530,87533] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5500-4171 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLR01000019.1 Listeria monocytogenes strain NCTC 10887 NODE_19_length_54953_cov_18.6302_ID_4288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5499 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 5433 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 5368 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 5304 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 5238 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [5229] 5170 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 5105 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 5040 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 4974 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 4910 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 4845 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 4780 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 4715 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 4652 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 4589 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 4523 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 4460 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 4395 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 4329 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 4264 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 4200 29 93.1 0 .......................C....C | A [4175] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //