Array 1 24244-35034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEO010000029.1 Micromonospora sp. HSS6-12 29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================== ================== 24244 37 100.0 39 ..................................... ACCCTCGCCGTCGACCTGCTCGACGAGGATCCGCAGCGA 24320 37 100.0 38 ..................................... CCCGGGTCACCCGTGTCCCAGAACTCCGGCGGTCGGGT 24395 37 100.0 37 ..................................... GAGTACATCGCCTTGTACAGCCGGTCGAGGTCTTCGG 24469 37 100.0 36 ..................................... CGCTGGACGGTGCGGCGCTTGGCCGTGGCTCGGACA 24542 37 100.0 38 ..................................... CTTCAGGTCCCGGGCCATCAGAGCCTGCCCGTGGTCCG 24617 37 100.0 37 ..................................... GTTCGTGCTCCGGGACGTGTACGAGGCGCGACACGAG 24691 37 100.0 38 ..................................... GTACGGGCGTAGCGGATCCACGCGCAGCCCGCGCCCGA 24766 37 100.0 39 ..................................... GATGACCCGGGCGAGGTTGACCCCGAGGATTGACCCGAG 24842 37 100.0 38 ..................................... CCCGGTGCGAGGGGCTGCGCTGCGCGTGCCAGTGACGA 24917 37 100.0 39 ..................................... GACGTTTGCCGTATCCGGCGCAGGCGGGGAGGTGTCCAC 24993 37 100.0 38 ..................................... AACGGCACCACCAGCCCCGTGCTGCGGGGCCTGGCCGC 25068 37 100.0 39 ..................................... AACGCCGGCGGCACGTCCGTCCAACTGAAGATCAGCAAG 25144 37 100.0 37 ..................................... CCGCGCAGCAGGTTCCCCCGGGCGGACAGCCGTACGG 25218 37 100.0 37 ..................................... ATGCCGCCAGCCGACTACGTCACCACGAGCGTCACGT 25292 37 100.0 39 ..................................... CGCCTACGCCTGCGAGTCGCACGTCATCGGCGCGCTGGC 25368 37 100.0 38 ..................................... ACCGCCGACCCGCCGCCGCCGGTCGCGGCCTGCCCGGT 25443 37 100.0 38 ..................................... TATGTCCAGATCCACGGGTGGTCGCCGGTCGAGCAGGC 25518 37 100.0 37 ..................................... TGGCGATGGTGAGCCTGGGCCGGTGATCCGCTACCTG 25592 37 100.0 35 ..................................... CCCTCGGCGTTCGGGTCACCCTTGCGATAGCTCAT 25664 37 100.0 38 ..................................... GCCGTCACCCTCGCGGCATGGGGCGCCGAGCGGCTGTG 25739 37 100.0 35 ..................................... GCCGGCGTGGCCAACACGGCGACCACGGGTACGAC 25811 37 100.0 38 ..................................... GCCGAGAGCGACCAGCAGGATTTGTCGCAGGGCGTCGC 25886 37 100.0 38 ..................................... ACGCAGCTCGCGCCCGTGATCGTCGAGGCGGGTCGGGC 25961 37 100.0 39 ..................................... ATTTCTGGTGTGCTCCTTTGCTCGGTTGAGCGGGTTGGT 26037 37 100.0 36 ..................................... CCCATCGAGGCCGTGGGCGTAGGCCACAACGAACAG 26110 37 100.0 36 ..................................... ACCTCCGCCGTCAGCACCACCACCCGGCCTTTGCCG 26183 37 100.0 38 ..................................... TACCCCATCCACCTGTACAAGAACAACACTGACAACAA 26258 37 100.0 39 ..................................... GCCGGTGGGCAAGACGCAGTGGGGCACCACGGAGGAGGC 26334 37 100.0 36 ..................................... GCTGACCTTGGCGTCACCACCACCGGGAGCGCCATC 26407 37 100.0 40 ..................................... TCCTTCGGCCGGCTTGCTTCTCGGCTTCGGTCTTCTGCTC 26484 37 100.0 36 ..................................... CCGCTGTATCCCGGGCAGCAGTGGGCGCGCGACGGC 26557 37 100.0 37 ..................................... GTCCTGTAGCTCGTGCAGGCCGCGCATGGCGACGGCC 26631 37 100.0 39 ..................................... TCGACCTGGCCGACGCAGGTCATGCCGGCACGGTCGAGG 26707 37 100.0 37 ..................................... GCGGTCTCCCGTGACTGTGACGTGACCGGTGACGTGC 26781 37 100.0 38 ..................................... TTGCTGTCTAGGGTCAGAACACGTTGCTACAGAGGGCG 26856 37 100.0 36 ..................................... TCGTCGTCCGGGTAGCGAGTCCACTCCGGCCACCCA 26929 37 100.0 37 ..................................... CACGCCAGCCGACGCGTTCCGGTCGCGGCCGACCCGG 27003 37 100.0 36 ..................................... CAACGTAGAAGACGAAGATGGGGCCCGGCCCACGCG 27076 37 100.0 38 ..................................... GACCTCGTGCGGCGCGACGCGGCGGCGGTCGCGGTCTA 27151 37 100.0 37 ..................................... GCCGCCTCGGCGGTGTCGTCCAGGGCCTGCTCGAACG 27225 37 100.0 37 ..................................... GGTCGATTGCGGTCACGACGTAGCCGGGCAGCGGCAC 27299 37 100.0 39 ..................................... GCCTTGACCAGCCTGCGGACCTCCGCCTGTTGCTTGCGC 27375 37 100.0 39 ..................................... CTGTTCGGTGAGCGGAAGATTCTCTGGTCTGCGCACGAA 27451 37 100.0 36 ..................................... TCGGTACCTGTCCGCGAGCCGGCACACCTCGCGCAT 27524 37 100.0 39 ..................................... CCGTGGACCCACAACGATCCGAACGCGGGCGAGGCGCAG 27600 37 100.0 38 ..................................... ACCTACGGCGACGCGTACATGATCTGCTGGCCGGTGGA 27675 37 100.0 37 ..................................... ACTCTCAATCGGCACCAGTCCGAGCCGGAACCCGTAC 27749 37 100.0 36 ..................................... CAGCGCTTTGAGCGTGCCACCGGCCGCGAACCAGTC 27822 37 100.0 39 ..................................... AGGGGTCTCTTCGATGTACGCGAGGCGGCACGCGCGCAA 27898 37 100.0 38 ..................................... CGTTAGGTCGCCCTTAAATCGTGACCGGCGTGACGGCC 27973 37 100.0 37 ..................................... CGCTCGCGCGCCGACCGGCGCGCGTACCTGTGGAGAG 28047 37 100.0 37 ..................................... TCTCGTGTGCCCTTCGGCTTGAACGTCCCCAGGCGGT 28121 37 100.0 38 ..................................... GGCTTCTGTTCCGCCAGCCACGCCTTCCACTCCCGGCG 28196 37 100.0 38 ..................................... CTTGACCGTGTACGTCCAGGCGTTCGGCAGGATGTCAG 28271 37 100.0 36 ..................................... GAGAAGGTCAGCGGCTACCTGAAGGACTTCTTCCGG 28344 37 100.0 39 ..................................... TCCTCAACAGTTCGGGCGATGGAAGCCAGCACGTCGAGC 28420 37 100.0 37 ..................................... TGCAGCGGCTCGCCGACGACGTGACCCGCCGTGAAGG 28494 37 100.0 35 ..................................... ACGGTGCTGCTCGCCGAGATGGCCCCGGCCGCGAG 28566 37 100.0 37 ..................................... AGGCACCAGCAGTCCGTACTCATCATCGGCGTACGTC 28640 37 100.0 38 ..................................... GGCCCTGGACCCGGCCGCCCGGCTCGCGGCCGAGGCGC 28715 37 100.0 37 ..................................... GCTGGGAAGGGCGAGGCGATGGCACCGCGTACCTGAT 28789 37 100.0 35 ..................................... TACGAGGATGTCCACCGGCCGGTACGTGCCGAGAA 28861 37 100.0 39 ..................................... CCCTGCGCGAAACCGAGGACGGGGCGCGGCAGCTCGGAC 28937 37 100.0 39 ..................................... CCGGCCGACGTGCAGGGGGCGGCGAAGCAGCTCGCAGGT 29013 37 100.0 36 ..................................... TCTCTTCGACGCGATGCGCAAGAAGAACCTCGATAA 29086 37 100.0 40 ..................................... CTCGTCTGGTGCCTCCAGCGCGCCGGCTACGTGTGCGCGT 29163 37 100.0 37 ..................................... CATGCACCTGCCGGGGCCGCAGGCTCCTCCCCGAACA 29237 37 100.0 38 ..................................... CGCCGATTGGAACCGCCGTCACCCGGCCGACGAGGCGC 29312 37 100.0 35 ..................................... TCCGCCCCCTTCTACACCGCCGCCGTCGACCTGCT 29384 37 100.0 38 ..................................... AAGAAGACCGGCGAGGGCGACAGCTACTCCGAGATCGT 29459 37 100.0 39 ..................................... TGGTCAAGAACGGCTTGCCAGTCGCGCAGCGTCAACGAC 29535 37 100.0 37 ..................................... ATTCGCTCTTTCCGGTGCCCTTTCCGATGCGCCTTGA 29609 37 100.0 38 ..................................... GGGCCGACTCCGGCGCCGCCACCCACATCGAGCCCGGA 29684 37 100.0 33 ..................................... CGAGGCCTCCGCCGACCGCCGGAGCCGATGACC 29754 37 100.0 40 ..................................... TCCGCGGCGTCGAGGATGTCGCGGGCCTGCTTCGCGAGGC 29831 37 100.0 38 ..................................... GGTGAGGTTCTTGGCCTTGCTCTTGCCGCCGCCCGCGC 29906 37 100.0 35 ..................................... ACCGCCTGGCGCGCCCGCCGCGACGTCGACCCGGC 29978 37 100.0 37 ..................................... ACCACCCGGGGCAACCGGATCCAGACGTGGCGGCCAG 30052 37 100.0 38 ..................................... TTGCAGCGCGGTCGGGGTCGTCCGTTGACGGTGCCGGC 30127 37 100.0 36 ..................................... AAGGCGGCCGTGCGGCGCGGCAAGGCCAGCCGGAAC 30200 37 100.0 37 ..................................... CGGTTGTTGTCCACCACCACCGCGCGCACCGGCGCGA 30274 37 100.0 38 ..................................... TACGAGGTAGTCACCGTCGAGGCGGATGACGTCGGTGA 30349 37 100.0 40 ..................................... AACCTCATCGGGGTACGCGCCGCGGCGACGGGAGGCGGGA 30426 37 100.0 37 ..................................... ACGGCGTCCTGGGCGACAGCCTCCCGCAGCATGCGGT 30500 37 100.0 37 ..................................... TCCGTGTCCGCCGGGCTGGGCCGGCACGACCACAACA 30574 37 100.0 38 ..................................... CACTCCCACGACGCCCCATGCCGGTGCTGAAACGTCGG 30649 37 100.0 38 ..................................... ACCGTGACGACCGCCGCCGCCGTGGTGCTCATCCGGGA 30724 37 100.0 37 ..................................... CCGGTCGGCAACGAGCTGGTCATCCGCCGGCACCCGG 30798 37 100.0 35 ..................................... AGGCACCAGTCGTGCATACACGCCACCGTCTCCCA 30870 37 100.0 37 ..................................... CAGGTGGGGTTGCAGCCGGTGCAAGGCCCCTACGCAG 30944 37 100.0 36 ..................................... AAGGACGCCACCACCGACCTCGCCCAGATCAACCGG 31017 37 100.0 35 ..................................... TGCTTCGCCTGGTCGGCTGCGTCGGCGTGGCGGGG 31089 37 100.0 39 ..................................... GCCTACTGCGTCCCCCACGACACCGTCGGCACCCGCGAC 31165 37 100.0 38 ..................................... GAGGGCCAGGTCGAGTCGATTGCGTCGCTGTACCACCA 31240 37 100.0 39 ..................................... ATCGGGAATGGCGGCGGCGGCGTTGATAGCGGCCTGCAA 31316 37 100.0 39 ..................................... CTTCGCCGCCCCAGAGACGGTTTCCCGGCCGATCAGGTT 31392 37 100.0 39 ..................................... GTCATCCACCAGATGTGGTCGGGTGAGATGGAGGAGGAC 31468 37 100.0 37 ..................................... CGAGCCACTCCCCCGGATCCTTGCCGCACGCCTCGAC 31542 37 100.0 37 ..................................... TCCCTGCGATCGGGTACTGATCGAGACAGCGGTGGGC 31616 37 100.0 38 ..................................... CGCTCGAACACGATCACCTGGTTGGCGTCGTACTGGTA 31691 37 100.0 39 ..................................... TGCTCGGTCGCCTGCCACGTACTGTCGCTCGCCCGGAAA 31767 37 100.0 39 ..................................... CCGCTCGGCGACCGGCCGACCGGCCGCCTCGTTGTCGTC 31843 37 100.0 38 ..................................... CTGCACCTGGTCTAGGGATGCGCCGGAGTCGCGAGCGA 31918 37 100.0 37 ..................................... CGGCTGCTGGCCTACATCGCCGTCACCATGCCCGACC 31992 37 100.0 37 ..................................... AGGGTGCAGTGGCGTGCGGCCCGCGGGAGGCTGGTGA 32066 37 100.0 36 ..................................... GCCGCGTTCCTGGACAGCCTCGGCGACGCCCCCGAG 32139 37 97.3 36 .........................A........... CTGATGGGTACCAGCGACTGACCCAGGGCACGACGA 32212 37 100.0 38 ..................................... AGGTTGGTGGTGCGCAGCCGAGCGAACACCCGGTAGCG 32287 37 100.0 38 ..................................... GGCCCGAGCGGCGTGCACATGCGGGTCATCACGACCGG 32362 37 100.0 36 ..................................... GGCGCCTCCATCGCCGCCGACCCCGCCACATGGGTG 32435 37 100.0 38 ..................................... GTGTCCTTCTCCGACCGCTGCAACGCCGCGCAGCAGTG 32510 37 100.0 38 ..................................... CCGGCGATCGTGGTCATCACCGACGAGGGAGGGGAAAT 32585 37 97.3 39 ...............A..................... GGGAACCGGTACAGCCAGTTCGTGTCGATGGCCCCGCGG 32661 37 100.0 39 ..................................... CGGGCCGGCGGCCGGCGGCTGTGGGACGAGATGGGCGGC 32737 37 100.0 37 ..................................... TCCGCACGGGACGGGTTGTGGTCCAGGTAGTCATGGA 32811 37 100.0 38 ..................................... CACGCCGGCGTGGACATGTCGAGGGCCGACGTGCGCGG 32886 37 100.0 37 ..................................... AACCGGATGGCCGCCGACCCGCAGATCGCGCTGGTGC 32960 36 94.6 38 ....-....................A........... CAGGACCCACTGCTCCAGGAGTTCCAGTCCCTGGGCCA 33034 37 97.3 39 ................T.................... GTGGCCCGGGAGCTGTACGACTTCCGGCACGCCATGATC 33110 37 100.0 41 ..................................... GGCCACAGCATGGCGCGGTTGCACCACGCGGGGACCTGCGG 33188 36 97.3 38 .....................-............... TGCGCCGAGTACCTCGGGTGGGAGCCGAAGGAGACGAC 33262 37 94.6 38 ................T....A............... TCCACCGACCTGATCGCCGGGTCGAAGGGTGACGGCGC C [33273] 33338 37 97.3 37 ................T.................... GTCGCGTCCAGATCGCGGGCCGTGGCGTAGTCCGGTA 33412 37 97.3 37 ..............C...................... CCGGCGGAGCTGCTGCGCCACATCAAGGGCCCGTACC 33486 37 97.3 38 ..............C...................... CGGGAGTTGAAAGGCATGGGCGAGGCACCGCGGCCCGA 33561 37 94.6 39 ....T.........C...................... TACCGCCTGACGACCGAGGACAGGCTAGGCCAGCGCGAG 33637 37 97.3 37 ..............C...................... GACTTCATCAACGCGCCAAGCGGCGGCGGATCAACAA 33711 36 91.9 38 ..............C....-.T............... ATGTAGAAGCCGAAGAAGTGGATCTAGATGGTCTTGGT 33785 37 94.6 40 ...........T..T...................... GCCCTGGTGTAGGTGTTGCTCATAGCCCGAGCCACCGCCG 33862 37 94.6 37 ..........................G.......G.. TTCCGCCGCTGGCAGGCCCTCGTCGCGACGTTCAACG CG [33877] 33938 37 97.3 40 .....T............................... GTCACGACGGAGGGCGTCACGACCCGCGGCCTCGCAGGTG 34015 37 94.6 38 ...........G...............A......... CAGGGAAGGGCGGGCCGGACCCGTGGGCCCGGCCCACG 34090 37 97.3 38 .....................C............... GTCGCGCCGGCGTACCCGGAGCTGACCGAGGCCCTGGT CC [34096] 34167 37 100.0 37 ..................................... GGGGCGAGGGCGCGGGCCTGAAAGCCTCGCGGTACGC 34241 37 100.0 38 ..................................... GCCGAGCGGGGCCTACCGTGGACCCGCACCGACGACTA 34316 37 100.0 39 ..................................... ACCGACCTGGCGTCGCTGACCCCGGTCCCCGGGATCGCC 34392 36 86.5 13 ....................T...A..-C.....G.. CCGCACGAGCAGC A,A [34416,34426] Deletion [34443] 34443 37 100.0 38 ..................................... CGCTCCCACACGATCACCTGCGTGGTGTCGTACTGGTA 34518 37 94.6 38 ...........T....A.................... TGCATCGGGACTCCTCCTCTTCTCAGTGGGATCTCGTG 34593 37 94.6 38 ......T...........A.................. AACCCGATGGCCGCCGACCCCCCAGATCGCGCTGGTGC 34668 36 91.9 38 ..............T....T....-............ GACCAGGTGTCGCTGGACGCCTACAAGTACGCCAAGTT 34742 37 89.2 37 ...........TG.T......A............... GACGCTGACCGGATTGCGACTCGGCCGGCGGGAGCAG 34816 37 86.5 74 .......T......T...A.G.......A........ AGATAGTTGTCGTCCGTTGCTGTGCCCGGCCCCCGCCCCCGGGTTGTGAGTACGCGGACAGCTCGATCATGGCC 34927 37 81.1 35 .......G......T.....T.A...G.......G.T GACGGACCGGTCACGCCGGACGCGCTGACCGCCTT 34999 35 86.5 0 ......-.......TT.....-.C............. | G [35026] ========== ====== ====== ====== ===================================== ========================================================================== ================== 145 37 98.9 38 GCTGCGCCCGGCCCACGCGCCGGGCGAGGATCGCAAC # Left flank : CTGCCACTCGTGCAGGCCCGGCTACTCGCACGTCACCTGCGCGGAGACCTGGCCGCGTACCAACCATGGACGGTGAACTGAGCCATGGACTTACTCGTCACGTACGACGTCGAGACAGTTACCCCACAGGGGCAACGCCGACTGCGCAAGGTCGCCAAGATCTGTGAGGCATACGGCCACCGCGTGCAGAAGTCAGTATTCGAGGTCGTCTGCCGCGAAACCGACAAGGTGCGCCTCGTCGCCGCACTCCAAGAGGTCATCGACCCGACCCAGGACAGCATCCGGATCTACCGGCTGCCGGCCCACGCGCTCGACGATGTCGAACACCTCGGCAAGCCACGGGCGATCGACCCACGGGGAGCGTTCGTGATCTAGGAACCACAAGTGAAAGCGGAAACCCCAGAGATTCCGAACCGAGAAATCTAGACTAGATGAACAAATCGGACCGTGAGTGAGTCAAGTGCGCATCGTCAGATGGCTATTCTTGCTGCTCGCGAGCG # Right flank : CCCCGTCGACGGCACCACAAGTACGCGGGTCGACCGCTGATGCCGTGATGCAGGGTGTGATCGACCGAACCAGAACCCGTATGGCTTCTTTCGATTCTTGACTACCGTGAAGGTGCACCATCCAAATAGGTCGAATTCTACCCAATCTCGGCAATAAGGTTATACCGCCCTGACCTAATCGAGCAGCCCGCGTACGGCGCTCGCGAGGTTGGCAAGCCTTTCGTCTGCGCGGTCGCGTCGGTGTTTGACCCATTCCTTGCCTTCGGCGGCGACGCCTTCGAGGACGTGCAGGGTGTGACTGAGCCCGGCAGCGTCTAGCGATAACTCAGCGATCTTGGTTGGGTTCTCGTCGTGCTGGAGCGTCCCGTTGTCAGGATCGCTCACTCGGATTGAGATGGGCTCTCCGTTGAACAGAGTCAGCTCGAAGGTCTGCTGTCGGGTGGCGATGCCGTCGATCCGTACGGCGGCGACGGCGTCGAAACGGTAGTTGAGCCGTTGGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCCACGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.20,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-64] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //