Array 1 331-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CNFN01000168.1 Mycobacterium tuberculosis strain Bir 183, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	====================================	=========================================	==================
       330	    36	 100.0	    41	....................................	CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCG	
       253	    36	 100.0	    37	....................................	GCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG    	
       180	    36	 100.0	    35	....................................	ACTCGGAATCCCATGTGCTGACAGCGGATTCGCAT      	
       109	    36	 100.0	    37	....................................	CGGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGG    	
        36	    36	 100.0	     0	....................................	|                                        	
==========	======	======	======	====================================	=========================================	==================
         5	    36	 100.0	    38	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	                                         	       

# Left flank :   CCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCAGAAACACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCC
# Right flank :  C

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,12] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.40,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.74   Confidence: HIGH] 

# Array family : NA
//


Array 1 405-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CNFN01000057.1 Mycobacterium tuberculosis strain Bir 183, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	====================================	=========================================	==================
       404	    36	 100.0	    38	....................................	TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC   	
       330	    36	 100.0	    41	....................................	CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT	
       253	    36	 100.0	    36	....................................	TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA     	
       181	    36	 100.0	    34	....................................	TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA       	
       111	    36	 100.0	    39	....................................	AACACCTCAGTAGCACGTCATACGCCGACCAATCATCAG  	
        36	    36	 100.0	     0	....................................	|                                        	
==========	======	======	======	====================================	=========================================	==================
         6	    36	 100.0	    38	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	                                         	       

# Left flank :   TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA
# Right flank :  C

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,12] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.40,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.74   Confidence: HIGH] 

# Array family : NA
//