Array 1 201960-204751 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKO01000002.1 Moraxella catarrhalis strain 1093063Y NODE_2_length_231754_cov_29.475838, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 201960 28 100.0 32 ............................ ATCATGCCTTGTACCATAAATACTTGCATAAT 202020 28 100.0 32 ............................ CATGGGCGGCGGACTGGTGGCGTTCATCAGAC 202080 28 100.0 32 ............................ CCGAGTTGAATCAAAGCATTGCTGATGCTCAA 202140 28 100.0 32 ............................ ATACCCTTTATTAAACAAAGCAAAAAAGTCGT 202200 28 100.0 32 ............................ TATTTCTAGCCATCGCCCTGCTTGCCACTGCG 202260 28 100.0 32 ............................ TTTACCTGTGTAGTTATCTAAAGGTATTGCTT 202320 28 100.0 32 ............................ ATCGCACGAATGCACAAATTCAATAAAGAATT 202380 28 100.0 32 ............................ ACTGCCCCGAATATTCGGGGCGGTAGTATCAG 202440 28 100.0 32 ............................ TTGTAACCCAGAGACCTCGGTAATCGTATGTC 202500 28 100.0 32 ............................ TGTTGAGCAGCAAGTGTAATATTATCTTGCAT 202560 28 100.0 32 ............................ ACGCTTTCAACCCAATCGCCCCAAGTACCACC 202620 28 100.0 32 ............................ TTTACCTGTGTAGTTATCTAAAGGTATTGCTT 202680 28 100.0 32 ............................ ATCGCACGAATGCACAAATTCAATAAAGAATT 202740 28 100.0 32 ............................ ACTGCCCCGAATATTCGGGGCGGTAGTATCAG 202800 28 100.0 32 ............................ TTGTAACCCAGAGACCTCGGTAATCGTATGTC 202860 28 100.0 32 ............................ TGTTGAGCAGCAAGTGTAATATTATCTTGCAT 202920 28 100.0 32 ............................ ACGCTTTCAACCCAATCGCCCCAAGTACCACC 202980 28 100.0 32 ............................ ACGACGGTCGAACAGGTATTCGCTGCGTGAAA 203040 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 203100 28 100.0 32 ............................ ATGACAAAGAACGGTTAAGTACAACGGCAATC 203160 28 100.0 32 ............................ AACTGTACCTGCTGGGGTGTATTTAAACGGCG 203220 28 100.0 32 ............................ AAAAATACAGCCAAGTCAAAACGCAGGCAGAT 203280 28 100.0 32 ............................ GCCAAGCGAGCCGTTTATTTATGAAGTGGGTT 203340 28 100.0 32 ............................ TTTTGGTTGATTATCTATTTCAGAAACTCTAT 203400 28 100.0 33 ............................ CCGACCCCCTTACTTACTGTATATAAATCACCA 203461 28 100.0 32 ............................ CTGTGCTTGAGTCTCTTGGGACTTCTGATAAG 203521 28 100.0 32 ............................ AAGCATTGAAAGTGCGGTAAATTCAGTCAATG 203581 28 100.0 32 ............................ AATAGCTAATCGCACGAAATACGCCAGCCAAT 203641 28 100.0 32 ............................ TGCGAAAAAATCAAATCTAGTCATATTTTTAC 203701 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGATAAATCTTTGCCAA 203761 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 203821 28 100.0 32 ............................ TCTCTGGTCTCACCATTTTCTGTTACACGCGC 203881 28 100.0 33 ............................ TCAGTGGGCTATACTGATTACATGATTGATAAG 203942 28 100.0 32 ............................ GAACATTCGGGGTGGCAGTATCAGCATTGGCA 204002 28 100.0 33 ............................ TACTATACCTGATTCTTATTCTGTGAATTATGT 204063 28 100.0 32 ............................ AACTTTTTCGTAATGCAAATTAAGCAGTTCTG 204123 28 100.0 32 ............................ AGTTGAAAGCTCTGTGAGTGGTAACACATCTA 204183 28 96.4 32 .......G.................... AAATGATGGCGAAAACTGGACAATCATTGATG 204243 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 204303 28 100.0 32 ............................ TACAACACTCACAGGCTATGGTATTGGTAATG 204363 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 204423 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 204483 28 100.0 32 ............................ CGTAGCATTCAACGCATCAATCGTATTTTTGA 204543 28 100.0 32 ............................ TTTGCCATAAATCTCACGCACGGACTGCCGTC 204603 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 204664 28 96.4 32 .....T...................... TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 204724 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAACGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //