Array 1 30246-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWA010000005.1 Erwinia amylovora strain Ea123-5-51 Ea_123-5-51_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30245 29 100.0 32 ............................. CCTCAATCCCCTACGAGGCGATCATGTCGGCC 30184 29 100.0 32 ............................. ATCGGCATCAGACTGGTACGGGAGTAGAGCAG 30123 29 100.0 32 ............................. CCTTGTCAGCCTACGAGATGGCAAGGTTTATC 30062 29 100.0 32 ............................. ACTGTCGCAACAAGGAGAAATGCAAATGAGTA 30001 29 100.0 32 ............................. CCGGCAACGTTCTACTCCAGTCCGCACCAGGT 29940 29 96.6 32 ............................T CAGACTGCACTGAGTTCGTTTCCTCACTGCTC 29879 29 100.0 32 ............................. CATCTGGCCTTTGCTATTCCCCGAAACCGCTA 29818 29 100.0 32 ............................. TTCCGGCATGCTGCGCAAATTCCGTCCCGTGC 29757 29 100.0 32 ............................. CCGATACGCAGAGGGTATTATCATGAAATTAA 29696 29 100.0 32 ............................. TCCGCCGTTTACGTTTCTGCTAATTTCGACAT 29635 29 100.0 32 ............................. GAACTCCCGGGCCTTGGGTAATTGATGGTGGC 29574 29 100.0 32 ............................. CGTGATTTTTCAATAGGAGCAATGGAAAGGGC 29513 29 100.0 32 ............................. AAATCTCACCAGTGGAGACTCCAGCGTCGAAA 29452 29 100.0 32 ............................. AACGTCTGGGTATCTGGCGCACATCATGAAAG 29391 29 100.0 32 ............................. TTGGAAAAAAGGATATCAACCAGTTTCTCAGT 29330 29 100.0 32 ............................. GTGATATGAGCGTCCTTGAGGATATGGGCGTA 29269 29 100.0 32 ............................. GCGATCTTATGGCGTTTGGAGAAAAAATAATC 29208 29 100.0 32 ............................. CGGATCTTACGATGGTTCTAATGACTCGGTCA GGCGTATG [29190] 29139 29 96.6 32 ..................A.......... CGCGCAAAACATATCCTCATCGCTGATTTATC 29078 29 100.0 32 ............................. AAAAAAACCGGATTCCTCACGCTATTTGCGCG 29017 29 100.0 32 ............................. ACGCGAATACAAAGCAGCACGGCAGGGGGGAG 28956 29 96.6 32 ......A...................... CGAACCTATGCGGCATTAGCGGATGCCGCCGG 28895 29 96.6 32 .............G............... TCGTTCCGTAAATGGTGTCTATCGTGGCAGTG 28834 29 100.0 32 ............................. TTTTTTAATTGCGTGTTGAGTCGCGGGGCAGA 28773 29 96.6 32 .........A................... ATGATGGAACTGATAGTTTTATTAGTTGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAACCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATGATATGTCTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTCTTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43077-41157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWA010000005.1 Erwinia amylovora strain Ea123-5-51 Ea_123-5-51_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43076 29 100.0 32 ............................. AAAGAGAACGCTGGATTTACTGGAACAAAACC 43015 29 100.0 32 ............................. CGAATGAACGAGGAGGCGTAATTTCATCTGGC 42954 29 100.0 32 ............................. TATTCCCATACGTGGCAACGCCCTGCCCTTTT 42893 29 100.0 32 ............................. AAAGTTAAATTCCGCATGTCGCCGGAGCAGCT 42832 29 100.0 32 ............................. GCCGTTGCGCGCGCTGCTGACGATGCCAGTCA 42771 29 100.0 32 ............................. CCCAGAAAAAACAATTGTCGTTAGCATGAAAT 42710 29 100.0 32 ............................. GTTAGTAATTTGGCCCACACAGCTATCTGCAA 42649 29 100.0 32 ............................. TCTTGACTTAGCAGCATCAATAACGGCCTTAC 42588 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 42527 29 100.0 32 ............................. ATTCGGCATTTTTATCCCTCACAACATGCGTT 42466 29 100.0 32 ............................. ACCCTGCTGCTCTGAATGATGTGTGTCAGTGA 42405 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 42344 29 100.0 32 ............................. CCGTGTTGTGTTGAGCTGCAAGCGCGCCGTAA 42283 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 42222 29 100.0 32 ............................. GCCGCATTAAAGCCGCCGCCGCCGGAACCCCC 42161 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 42100 29 100.0 32 ............................. GTGGCAGCGGCATTTGGGAAGGATCACAAAGA 42039 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 41978 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 41917 29 96.6 32 ................T............ GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 41856 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 41795 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 41734 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 41673 29 100.0 32 ............................. GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 41612 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 41551 29 96.6 32 ............................A TTGAATCAGTGTCTTTCAGGGACGATGTTTTC 41490 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 41429 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCC 41368 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 41307 29 96.6 32 .................A........... TTTCTCCACACACAACGGTGAGGGCACTGTCT 41246 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 41185 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //