Array 1 85-1966 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLUV01000010.1 Paracoccus endophyticus strain SYSUP0003 s.C4002_Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 85 29 72.4 32 .GAGA.A.GA.C................. ATCACGCGCATCAACTCGCTCGGCATCAAGGC 146 29 100.0 32 ............................. GGGTTTGAGCGGTTGCCGATCTATGTGAATCA 207 29 96.6 32 ............................A TCGCATGGATGGGCGACCACCGGGGCACCGCT 268 29 100.0 32 ............................. GCAGATGCCGAGACGGCACGCAAGGCGCAGGC 329 29 96.6 32 ............................T GTGGGCATTTTCGCCGGGCCGCAGGTGATGCG 390 29 100.0 32 ............................. GTGAGCGAGGAGGAGGGCGAGTTCGACCATCT 451 29 96.6 32 ...........................T. AGAGGGCGGGACGTGTCATTCGGCGGCATCCA 512 29 100.0 32 ............................. GGCGGGACCGGCGGCGTCATCCCATTCAAATA 573 29 100.0 32 ............................. CCCGGCGAGTGGATCGACGCCTCCATCCAGCT 634 29 100.0 32 ............................. CCATGGTCTTCGCGCAGCAGCTGGTCGAGGCC 695 29 100.0 32 ............................. CCACGGCGGGGTGACGGCTCGGCAACTGCTCG 756 29 100.0 32 ............................. CGCACCCGCCAGATCAGCGCCGACGACTGGGA 817 29 100.0 32 ............................. GGCCAGCAGCTTTTCCTCGTGGCGTTCGGCGA 878 29 100.0 32 ............................. ATCTCGCCTGCGGTGCAGAGGCGGCAGGGGGC 939 29 100.0 32 ............................. ACGCTCAATCCCTAGCGCGCCCAGGTCGATTT 1000 29 100.0 32 ............................. TCGCTGGCATCGAATACGACTACGACGAGACC 1061 29 100.0 32 ............................. CGCAGCATCGTGATGGGGCATTTCGTCAATCG 1122 29 96.6 32 ............................C CGGCCAAGACGAAAAAGCCCACCTGGGTGATC 1183 29 100.0 32 ............................. GGCGGGCTTTGGAACCGGCCGCTGCGGCGCGG 1244 29 100.0 32 ............................. TGTGACCGCCGGCGAGGGTGCCCCGAAACGAG 1305 29 100.0 32 ............................. GCGCGCATCCGCAGCGGGGACATCGATACCCT 1366 29 100.0 32 ............................. CCACGGCGGTGAAGATGTCCGGGGGCTGGCTC 1427 29 100.0 32 ............................. GCGGCGCCGCGCTGGACGGCGGCGCGGATGCG 1488 29 100.0 32 ............................. GTCGCGGTGGGCCAGATCGTCCCGTTCCGCGG 1549 29 100.0 32 ............................. GACCCGTCCACGCAGGTGGGCTGCATCATCGT 1610 29 100.0 32 ............................. CGGCGTGCCCTATATCGCCGACAGCGCCGCAA 1671 29 100.0 32 ............................. TCCTCGGATGAGGCGAACGAGTTGCGCCGCCC 1732 29 100.0 176 ............................. CCGCCTGCACGGCCCAGAGTTCGGCGGCCTTGCTGTTCCCTGTCAAACGACATCAGGAACTGGACTGGCGCATTGCCTCGCATGAAAGGTGACCGAAGGATGCCCGGCAGCTGACCGTTCGGCGACCGCGATCAGGGTCAGTGGCGGGCGGCGGGGCGATGGCGGGAAAGATCAGC 1937 29 72.4 0 A..GC.G.T.G........T.......A. | C [1952] ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 29 29 97.6 37 CTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TGATCTCCCTGGCGGTTGCCGCCGCCGGTTGGGTGGGTGAGACTTCACCCGGAGATTACGCCGCCTTCCAATTTCCACCACTTCC # Right flank : GGGTCTTGCCGGTCATGGGTCTTCCTCCGGTCGGGGCAGTGCCTGAAGCGCGCCGTTCTGCGCGCGGTAGTGTCCGCGCAGGTGGTGTAATTTCGCTGGCGCTGCCGGTGTAACCCGAGGTGGCCATCGAGGTGTATGGTCGAGGTGGAGTTTCGACGCTTCAACCCCGGACTGTTGATTTTCATCCGGAACTGACCCGGGTAGGCGCGTAATTTCCACTGAGAACTGACCCATGTGACCCTTCCCCAAAGCGGAGCGCGGCGGGGTAACGGAGTGATCCACATGGGACTTTTGAACATCATTCGACGCATGGCGTTGCGGGAGAAGCTGCCGATCCGGGAGATCGCACGGCGGACCGGTCTGTCGCGCAACACCATCAGGAAGTATCTGAACGCTGGCACCATCGAGCCGAGGTTCGCAACGCCTGAGCGGCCGAGCAAGCTCGATCCGTTTGCCGAGAAGCTGGCGGCGTGGCTGAAGACGGAAGCCGGCAAGTCACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1949-4714 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLUV01000034.1 Paracoccus endophyticus strain SYSUP0003 s.C4002_Contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1949 32 100.0 36 ................................ TGGTATCATCCTGACGGATTGCAGCGACAACATCGT 2017 32 100.0 33 ................................ AAGAACCTCTCCTCCTCGGATGCGCTGGCGCTG 2082 32 100.0 35 ................................ AGGCGATGGGCGATTTCGGGCGCGCTGTCGTGGAC 2149 32 100.0 36 ................................ AGGGCATCATCAACGGCGTCAAGAGCATGGTGGGTG 2217 32 100.0 35 ................................ GCACCTGAGCGCGCGCCCTCACAATCCACCGAACA 2284 32 100.0 39 ................................ GCGTTCTTCCGGGACCGCGGCGAGCTGCCGCCCAAGCTG 2355 32 100.0 35 ................................ ACACCAGGTCGCAGGGTCTACAGGGCCACATACGG 2422 32 100.0 37 ................................ ACGTCCAGCGCGGCCGCGTCCATCAGCTCGTGATGGA 2491 32 100.0 33 ................................ CTGATCGGCCACCTGGGGCAAGACCCCGAGGTC 2556 32 100.0 34 ................................ GAGATCGTGACCGAGTTGGCCGCCAGCGCCACTT 2622 32 100.0 35 ................................ ACCATCGAAGGGCGGTCCATCACCCGCACCCCCGT 2689 32 100.0 35 ................................ CCCATTTGGCAGGACAGCAGCATACCTGATCATGC 2756 32 100.0 33 ................................ CGCACCGGCCGGGATTTTGCCGGGTCCACGCAG 2821 32 100.0 34 ................................ TGTTCCCAGTAGCGGGGGCCGGGCTCGGCGTCGA 2887 32 100.0 35 ................................ GCGCCCGTGTGCTGGGCACCGAAGGTCTTGCAGGT 2954 32 100.0 34 ................................ CTCTACATGACCCTGACCGGACTGGTGCAACGGG 3020 32 100.0 34 ................................ CTGAACGACGCCGGCACCGCCAGCGTGGTGTTGC 3086 32 100.0 34 ................................ GCTATCAGCGCCAAGGAATGTAAGGTCGGTGGCA 3152 32 100.0 35 ................................ TTCCACGGCACGCCTGCGGGCTGGGTGTTCGACCG 3219 32 100.0 35 ................................ TGGCCGCTGCACACCGCGCTGGCCAAGCTGCCGGA 3286 32 100.0 35 ................................ CGTCGACACCTCGGGCCTGATGGCGCGGGCCGAGG 3353 32 100.0 35 ................................ GACCCTAAAGCGTCCATCGCACTTAATGCCGCATT 3420 32 100.0 34 ................................ CAGGTGGCAGCCCTGCACCGCGCCGAGCAGTAAC 3486 32 100.0 34 ................................ ACGCCCAGACGGGCTGCCACGGCGACCGCCGCCA 3552 32 96.9 34 ........A....................... CCGCCGTATTCGCCCGCCAGGACGCGGAACAAAC 3618 32 100.0 36 ................................ CTGGACCGGACCTCGGCCTCCTTCAGTGCCGCGGGC 3686 32 100.0 35 ................................ CTCCAGCCCGACACGCAGCTCTCGGTCGTCGAGAT 3753 32 100.0 36 ................................ TTGATGAAGGACACCGACACAAGGCGACCGTCCCCC 3821 32 96.9 37 ...........T.................... GAGGTCAATCGTCGTCGGCGTAACGCCCGCGTCGATC 3890 32 100.0 34 ................................ ATCGAGGACGCCACGTCCGAGACGGCGGGCGCTG 3956 32 100.0 33 ................................ GACACGGCGACCGGACGATACACGCCCCCGGCC 4021 32 100.0 34 ................................ AGGACTGACACCGCATTGCGGTATTGCGGCCCGA 4087 32 100.0 33 ................................ CTCTCCATCGTAGGGGGTCTGGCCGCGGCCGGA 4152 32 100.0 35 ................................ CTTGTCGGTAATCTGCCAAAGCGGGTTCCACACAT 4219 32 100.0 33 ................................ CCCGCCAAGCACTTGCTCTGTTGGATGCGACAC 4284 32 100.0 35 ................................ CTTGATAATAACGAAATATCAGAGGCCGATAGGAT 4351 32 100.0 35 ................................ GGGGTCGCGTCCCCGACGCCCGTCCGGTTGTTGTC 4418 32 96.9 34 ..........................A..... ATCTGTAATTGCCCTTGTATCCCCTGCGGGGGGT 4484 32 100.0 35 ................................ ATATTCAACGCACATCGGATGGAACAGGAACAGCA 4551 32 100.0 33 ................................ GCCGTGGTGGCGTTCTGGGCCGCCGCGGTCCCG 4616 32 100.0 35 ................................ CGCGATTGCGGGCGAGAAAAGCCAGCGCCTTCCTG 4683 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 42 32 99.8 35 GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Left flank : GACGCCTATCCGCCGTGGTTCTGGAGTTGAGATGCTGGTCCTGGTCACCTATGACGTGGCGGTCCAGACCGAGGGCGGCGCGAAGCGCCTGCGCCGCGTGGCGCGCGCCTGCCAGGACTGGGGCCAGCGGGTGCAGTATTCAGTTTTCGAGATCGAGGTCGATCCCGCGCAATGGACACGGCTGAAGGCCGGGCTTGAACAGATCATCGACCCCAGGCATGACAGCCTGCGCTACTATTACCTTGGTGCGAACTGGACCCGGCGGGTCGAGCATGTCGGCGCCAAGCCCGCGACCGACTTGGGCGGACCGCTGATCCTTTGATGCGAACCCGAAGCGTGTCGCCGGGGGCAGGAGGGTTCGCACATGGTTCAAGTTACGCAATTCCTTCGACCTTTCCATGTGGCGACAGCAGCGGAGGAGGCGCCTGGCTGCGCGCGTGGGCGGGTGGGCAGACCGCGGCTTCTTTCCGAAAGCGGATCAGTGGGTTAATGGTGGGGGA # Right flank : CACCAGCGTCTGTCGGTCGGCGGAAATGGGCTGCGCTCACTCTCTTCCCGGGCTGCGATCGTCCGATCCGCTAGCCGGTTGTCCGCTCGCATCATTTGGTCGCGACAGTCGAGCGTCGGCAGGTACCAATGTGCGGTCGTGTCAGTCTGTCAGGGCCTGAGACAATATCCGGCCCCCGCTCCCTCCCCCCGTCTTGCGGAGGAAGGCCCTTCGCTTCCTGATCCGTATCCACACGATGCCTCTTGTCGGTGGCCAGCCGCTTCCCCGCGGGCTTTTCTCCCGCCCGGCATCCGCCGTCGCGGCTTGCGCGGTCCCCGGTCGTTCTTTGCGTCCCGATGACGCCAGCACCCGCCGGTGGGTTTTGTTGTCGTGCTTCTGCGCCGGCCCAGAAGGAGTCGGTTCGGCGCGGGGTGGGGTAGTCCCCGGATCATGTCGGAGGCTTGGTGGCCGGTGTCTCCGCACACCGTGACCATCGCTCTTTCGCAACAGCCCCGTCACGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //