Array 1 1065458-1066464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039503.1 Salmonella enterica subsp. enterica serovar Worthington strain 7101.67 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1065458 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 1065519 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 1065580 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 1065641 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 1065703 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 1065765 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 1065826 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 1065887 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 1065948 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 1066009 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 1066070 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 1066131 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 1066193 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 1066254 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 1066315 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 1066376 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1066437 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1075199-1076939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039503.1 Salmonella enterica subsp. enterica serovar Worthington strain 7101.67 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1075199 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 1075260 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 1075321 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 1075382 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 1075443 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 1075504 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 1075565 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 1075626 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 1075687 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 1075748 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 1075809 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 1075871 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 1075932 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 1075993 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 1076055 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 1076116 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 1076177 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 1076238 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 1076299 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 1076360 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 1076421 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 1076482 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 1076543 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 1076604 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 1076665 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 1076726 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 1076787 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 1076849 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1076910 29 96.6 0 A............................ | A [1076936] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //