Array 1 36562-35270 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPR01000031.1 Streptomyces anthocyanicus strain JCM 3037 sequence031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36561 29 100.0 32 ............................. ACGAACGGCTGCCCGTCCTCCACCTGCACCGG 36500 29 100.0 32 ............................. TCGACTGGTCGGGGGCACCGTCGCGTCTCGAT 36439 29 100.0 32 ............................. GTGATCGTTGAGTGCCGCAGCTTCGTCTTCGC 36378 29 96.6 32 ............................G GCATACGCCGAGCGGTACGCGCTCCGCTCACT 36317 29 96.6 32 ............................G CTGCGCGCCACAATCAAGGATCTCGACGCGAA 36256 29 96.6 32 ............................G CGCTGATGCCGATCATCGCCGATGTGGTCGGC 36195 29 96.6 32 ............................T TGCAGGGCGGTGTGGACGCTGGTCGGGATGAG 36134 29 96.6 32 ............................G GGGTCTCATGGCCCTCGGAGCCGGGGTTTTCC 36073 29 96.6 32 ............................A CGGCCACCTACAAGGGTGTGTCCGCTGTGAAC 36012 29 96.6 33 .C........................... GCCCGACCCGCTGCTGTCCGTGCGGATCGACGA 35950 29 100.0 32 ............................. GCCGCCTTCTCCCGGGCCCGTCGCGCCATCGG 35889 29 100.0 32 ............................. TGTCGGACCATGCGTTCGTCCTCCGCCAGCTC 35828 29 96.6 32 ............................T GGATCGCCCACACCTATGCATCACGACCAACC 35767 29 93.1 32 ...............A............A TGAGGCGCAGGGCGGTCTTGTCGTTGCCGAAC 35706 29 96.6 32 ............................G ACGTACCCGAGCAGCCCCCAGTACTGAAGGGC 35645 29 96.6 33 .................A........... TTCCGCCGCCGGGGGCTTCACCGAGCAGGAGCG 35583 29 93.1 12 ..........T.................G ATGATCCAATTC GGGC [35563] Deletion [35543] 35538 29 86.2 32 ..............T.........A.A.G CGGCGGTGCGCCGCTGGCGGGAGGCGAACCCG 35477 27 89.7 32 ...........--.T.............. TTCTCTGCGGCTGAGTGGAAGGCCGTACCTTG 35418 28 93.1 32 ........-...................G TTCGACCGGGGCACCGGCCGTATGCGCCGCGT 35358 29 96.6 31 ....................A........ GGAGCCGCGCGGCGCCTGGTAGTGGATGACG 35298 29 89.7 0 .........AT...T.............. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 95.8 31 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : CTGCCGGACGAGGACCTCGGTGCACTCTGGGACGACGGCGACAGCGTCGTCAGCAGCGGCCGCAACTGGAGCGCCACGCACCACTTGGACATCATCCCTGAACCCACCGACCCCACCCTTGCGGAGCCAACCCCGTGAGCGCCGGGACCACCGTTGTCGTGCTCATCGCGGCCCCATCTGGGCTCCGCGGACACCTCACCCGCTGGTTCGTCGAAGTAGCCGCCGGCGTCTTCGTCGGCGATCCCAACCCTCGCATCCGCGACCGCCTCTGGACCATCCTTGCAGAACGCATCCACGACGGCCAAGCCGTCATGATCGAACCCGCTGCCACGGAACAAGGCTGGTCGGCCCGCACCGCCGGCCGCGACCGCTGGGCCCCCGTCGACTTCGACGGCCTGACCCTCATGGCCCGTCCCCGCCAGAACGGACAATCTTGGCGGCCTACGAACGAGGCAAAGGAAAATGGCATGATCACGTGACAACGCTGCAGGCCATGAAGT # Right flank : CGCAGGCACGGCGAGGCCGTCACGACGACCCTGACGACACGTCGCGGCTGCCCTCTTCGGTCTGCTCCCGGAAGTCCGGCACCGGCCAGTCGAACGCCGCGTCGATGCTGGCAAACTGCGACTGGTAGTCCTTGGCGTAGAAGGGCGGGAACATGACGACCGGGGCGTCTGCCGGTACGACGTCGCGCAGGTAGTCGCGGACGTCCCCGGCGAAGAACGAGCCGAGGCGGGTCTCCACCCCTTGGAGCTTGGCGACCGTCTTGGAGTGCATCCGCTCCCACTGGAGCTCCGTCGCGACCATGACCCGCCGGTGGTAGTCGCCGTGCTTGCCGACGTAGCCGAGGAACCTGGTGTCGAGCATGATCGTGGCGAGGAGGTCGGTGCGGTCCTCGGTGTACGGCTCCAGCCACGGCACCTGCTCCAGGTACTCGAACTTCAGCCGGTAGTCCAAGTCCTGGTCCGACAGCCACCAGCCGAGGGCGCAGGAGCAGCCCTGGATG # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47075-48383 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPR01000031.1 Streptomyces anthocyanicus strain JCM 3037 sequence031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47075 28 100.0 33 ............................ CGACGGGTCGGACAGCAGGTTGGCTCCGCCGGT 47136 28 100.0 33 ............................ CGCGGCGACTGCCCTACGCGGGTCGTCGGCGGC 47197 28 100.0 33 ............................ TCAGTACACGAGTACGGAGCCGACCTACGCGGT 47258 28 100.0 33 ............................ CCGGGAGAAGGTCGCGGCTGCGATCGGCGCGGG 47319 28 96.4 33 .................A.......... GTCCAGATCAACCTGGTCAAGTTCTGGGGCCCC 47380 28 100.0 33 ............................ GGTGCAGCCCCACCCGATCAACACCCGCGCGTT 47441 28 100.0 33 ............................ CACCCGCGCGTTCTCCCCGGCCGACGTGATCGC 47502 28 100.0 33 ............................ CTGGTGACGGTCACCGGGGCGGGTACGACGTAC 47563 28 100.0 33 ............................ GGCATGATTAGTGATGTCGGAAGGGAATGGCAG 47624 28 100.0 33 ............................ CAGAGTTTCCCGCACCCCTCCGACCTGCGGAAA 47685 28 100.0 33 ............................ GCGTGTGGTGTACCTGGACGGGTACGCAGGTGA 47746 28 100.0 33 ............................ TAGGAGTCGAGGGGCTCGTCGAGGTAGTCGTCG 47807 28 100.0 33 ............................ CTCGTCCTTTCCGCAGGTCCGGGCCAGCTTGGC 47868 28 100.0 33 ............................ TGCTGACGGAGCCGATGAAGGCGTCGTCGGCAG 47929 28 100.0 33 ............................ GGACACCATGGTCCTCGGCCGCAGCGACTACCA 47990 28 100.0 33 ............................ AGGCGTTGAGGATGCTCGCCTCGAAATGGGAGT 48051 28 100.0 33 ............................ CTGGGTCGGCGGGCTCGACTGGCCGAGCGCCGT 48112 28 100.0 33 ............................ CCCGAGACAGCTGCGGCAGAAGACGTGCGGCTG 48173 28 96.4 33 ........................A... CATCATCGAGATCGCCACACCGAACTACCAGAG 48234 28 96.4 33 .............T.............. GGCGTACGCCTGCGACCGCAACGGAGGCTCGTG 48295 28 96.4 33 A........................... GCGGTTGGTGAAGGTGGTGAAGGCCCCGGAGAT 48356 28 82.1 0 ............TT.........TC.A. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.5 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : CCGCCGGTAGCCGCCCCCACGTCAGTCCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCGTCCATGGCCTGGAACGCCGGGCACGCCTTACCGCAGTCGTGGATGCCGCACACCCACATGAACCACGCACGCCCTCGGCCACCGCTGACCTCGTCCAGCCGCCGCCGGAACGTGGCCGACACGTACTGGTCCCACATCGTCCCCGCCACGGCAGCCGTGTCCAGCAGATGCCCCAGCAGTAGATGCGTCCGCCCACCGTTGCGCGCAGCCGACTTCCCCCACAACCGCGACACCCGCGTGATGACCTCGTCGGCCAGGCCCATCGACCGCATCAACTCGACGACCGACCGCTCATCCTCCACGCCCGCCCCCTGAAGACTCGGCTGCTCGCAGCCAGTTGGTGCCGGCACTGTAAACGGAGCCACTGACAATGCCTGCCGAGGCCGAAGCGAGATGAAGGAAAACAGGTACCCTCGCTCAAATCACCGCAGCTCACGAAGT # Right flank : CGTTCACTCAGTTATACGGTTCGAAGGAGCTCTGCTCCCCGCACCCGCGGGGACCGGCTGCTGCGAACCGGCAAGGTTCACAGCCGATGGCTCGAAGCATGGGCCTCCTGAAAATCACTGACTGACGCCCGACCCCGTAGGTATTCATGGCGGTATACTTTCCGACGTGGATACGACGATCAAGATCGGTGCGGAGACCCGCGACAAGCTCGCCGCTCTGGCCGAGGCCAGGAACATGTCGATGCGGGCGTTGATCGAGGAGTTCGCCGCGACCGCGCTCACTCCTGCGCAGTTGCGTGAGCGAGCCGAACGCACAGACGCGTTCTTGGCCGCAGAGTTCGGGCACCGGGTCAGCGACGATGAAGCTGGCGCATTGCGTGAGCGGATGCGGCAGGCGCAGAACGCCGGTCAGGCTCGGGTTCGGGGCACGGCGGCGTGATCGTCGAGCACTACGTCCTGGACAGTCGCACACTCCTTGCTCTGGGGGGCAACAAGCAGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1569-1052 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPR01000081.1 Streptomyces anthocyanicus strain JCM 3037 sequence081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1568 29 100.0 32 ............................. TCCTCACGGAGCCGGTCCCGGTCGAGACGGAC 1507 29 100.0 32 ............................. TTCCCTCTGCTGCGGCGCAGCACCGAGATTCG 1446 29 100.0 32 ............................. CAGAAGGGGGGAGCGCCGTGAGGCACGAGACC 1385 29 100.0 32 ............................. ATGGCGCCGGCCAGGGTGGCCCGGCGCCCGAT 1324 29 100.0 32 ............................. CGAGCAACGGCGGACAGCATTCGAACAGCCCT 1263 29 100.0 32 ............................. ACGACATCTCCGCCGCCCTGCCCATGCTGGTC 1202 29 100.0 32 ............................. GATCGGGCGTCGATCCGGGTGATCTCCTCTTC 1141 29 100.0 32 ............................. GGCGAGAGCGGCAGTCGGCGGATCACCCGCCA 1080 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : CGTGCGGTCACCGTGCACCACTTCCACACCGGGCACGTCCACGCCGGACCGGCCACGGTTGAAGGTGGTGACGTCACACCCCCGCGCCAACGCGGTCTCCACAATCGCCTTGCCCAGAAACCACGTTCCGCCCATGACGAGAATCCTCATGCCCCGATCCTGCCCTGCCCGGGGCGCAGGCGACAGGGCGGGCTACGCCGCAGGCAGGCATCCCCTGGGTGCAGGGGCGTGCATGTCAGAGGTGCCTGCAACGCGGGAGGTGATCCCTCAGCACCTGCTCGACCTCGACACCGACGGAGCCCTGCACGCCAGCGGGCTGCGGAGGTCACCAGGCATCAGCTCAAGCCGAGACGCGAGCCGTTCCAGCTCGGCCGCATCCCGCACTAGTGTGAGGGGGCCGATCGGCTATGGATCGGACACCACCCATGTCGCATTTGCCGGAATCTGCAAAGCTTACTGAGAACAGGTCCCCGCGTCCGTAAAACCGCAGGTCAATCAGT # Right flank : TTGTGACACCCCTCCCCTTCGCCGCAGCGCGTTCACACACCCCTAATGCTCTGATATGGGAAGGTTCCTCCAGATCTGCCCCATGACCAGACCTGAACCGAAGGAGCGCTGCCGATGACCCTCAAGGACGAGGTCTTTGAGTACTTCACCGAAACCCTCAGCGGGTCCGAGATCCGTGCCGAGGACATCACTCTGGACACGTCCCTCGACGACAACGCTCTGGAATTCGACACCCGGGGTGCGCTGTGGGTGTCCATGGTGGACGAGCGCTTCGGCGTGAGCATGGACGACGCCACCGTCGGGGGCTTCAAGACCATTGGCGACATGGTCGACTACATCGTGCCCCGCTACCAGTAAGTCCCTGCTGCGCATCACCCGGGCGGAGAGGTCGTCTCGGGGTGCTGGAGGCGATGCGCGCCGATGCCTGAGCGAAGCGAAGGCATCGGAACTCTTACTTCATTGTGGTGCTTGATCTTCTTACTAAAGGGGCCTGATCTACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1587-1179 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPR01000086.1 Streptomyces anthocyanicus strain JCM 3037 sequence086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 1586 29 100.0 32 ............................. CACAAGAAGCCGTTCGGGATGGGCGTCCACGA 1525 29 100.0 32 ............................. CGCATCCGCGACGCCCGCGCCCGTGTCCTCCC 1464 29 100.0 32 ............................. GAGGAGCCACGCAATGCCCCGGAACAACAACC 1403 29 100.0 32 ............................. GTCTCCCTCGGCCCCTCATCCACGAGGGTGAT 1342 29 96.6 44 ............................T GCCTCCCAGTCCACCTCCCAGTCCAGCCGCCCGGCCGCGGGTTC 1269 28 89.7 33 ............TC...........-... AGGACACTGCCGGCCTCGTCGTACAGGGTGACC 1207 29 86.2 0 .............CT......G.A..... | ========== ====== ====== ====== ============================= ============================================ ================== 7 29 96.1 34 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GTCTCAGCGGTTGTAAAGATGCAGGTCAAAGAG # Right flank : TCGAGCTGCACGGCCGGAACGCGCTGTGGGGTCGTCTCTGCACCTGCGGGGGTGGCTTGCCGACGCACAGGACCGCAGGGCCTTCGGGGATGTCGTCTTCACCGCGGGGGCCCACGTTCACTCAGTTGTACGGCTCGGAGGCGCTAGGCTCCCTGCCCACGCGGGGATCGGATGCTACGAACCGGCACGGTTCACAGCTGATGGCTCCGAAGCAGGGCCTCTTGAAGACTGCTGACCTGACACCCGGCCCCGTGGGTATTCATGGCGGTATACTTTCCGGCGTGGATACAACGATCAAGATCGGTGCGGAGACTCGCGACAAGCTCGCCGCTCTGGCCGAGGCTAGGAACATGTCGATGCGGGCCTTGATCGAGGAGTTCGCCGCGACCGCGCTCACTCCTGCGCAGTTGCGTGAGCGCGCTGAACGCACAGACGCGTTCTTGGCCGCAGAGTTCGGGCACCGGGTCAGCGACGACGAAGCCGGCGCATTGCGTGAGCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10534-9102 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPR01000046.1 Streptomyces anthocyanicus strain JCM 3037 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10533 29 100.0 32 ............................. GACGCGATCGCGAGCCTCATCCGCGACGCCAT 10472 29 100.0 32 ............................. GGGTCCTTGCCCCAGCCCTTCAGGCGCTGGAG 10411 29 100.0 32 ............................. GAGTCGACCACGGGGACGTCCCTGCGCTGGTC 10350 29 100.0 32 ............................. GACACGGCGACCCGCAGAACCGACGTCGTGGG 10289 29 100.0 32 ............................. TCGCGCCGAAGGGCCGCCCGACTTCCCGGCCT 10228 29 96.6 32 .........A................... GCGCCCTGGCCAACGACGAGGCGATCGAGCGG 10167 29 100.0 32 ............................. CTCTTCAAGGACGGCCCGAACTCCTTCGAGCC 10106 29 100.0 32 ............................. CCACCTGGTGAATTCCTCGCCTGCGTCGCCGA 10045 29 100.0 32 ............................. GGCACCAGGAAACCGCCGGCCGCGTCCGTCAG 9984 29 100.0 32 ............................. AACCAGGGCACCGCCGATGCCTGGCCTATCTT 9923 29 100.0 32 ............................. GTTGGGCGCCGGCTGCACCACTGCGAGGCACG 9862 29 100.0 32 ............................. CGGACCCTTCGCCGGCAGGGGCAGACCGAAGA 9801 29 96.6 32 .....................C....... TACGACCTCTCCGGTGTCCGCCCCGACGAGGC 9740 29 100.0 33 ............................. TCACCACCGTCCACGGCCTCAACCGCTCACAGG 9678 29 100.0 32 ............................. GACCACAGCTGTGACGCGCTGCGCTACGGTGT 9617 29 100.0 32 ............................. GACTACGTGATGCCGGGCTCTGGCATCAGCTG 9556 29 100.0 32 ............................. AGGGGGTGCAGTGCGTCCCAGGTCGCCAGGAG 9495 29 96.6 32 .......................T..... GCCGCCAACGCCACGCCCACGGTGGTCCGGGC 9434 29 96.6 32 ..............G.............. GGCAGCCGCACCGAGTGGATCACGGTCAACAA 9373 29 100.0 32 ............................. GACATCGTCGGCCGTTTCCGCTCCGGTCGGCT 9312 29 93.1 32 ................T........A... ATGCCGGCCGCGTACCTTGGCTGCATGATCTG 9251 29 89.7 32 .........A....T.........T.... TCCGGAGTGGCCGAAGAGTGCTGTGTCATGAG 9190 29 89.7 32 .A.......A......T............ AGTACCGGGATCACCGCGTGCATGGCGACGCC 9129 28 86.2 0 ..............T........T-...G | ========== ====== ====== ====== ============================= ================================= ================== 24 29 97.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AATCCTCGCCCCGTTCCGCCCTGGTGCGCATCAGCCCCGTCCCGAAGCACCACACGTCGAATAAGACGACCAGCAAGCACACACGCGAGCAGCCCGCTCCGGATCCCGTCCGACCACAGCACCCGGCGGCTCCCTCAACACCTGACTCACAAGCGCAACCCTTCGCGCCTCCCCGGACGAAGTCTCGCCCGGCAACTCGGCGGTCCGCTCCCGCAGCGCCGGCGGCCCGCCCACAGCCGCAGGCTCCGCCTGAGCAGAGGCGCCAGCTATGCCATCGAGCCGACGGAATCGTCCAGCCCGGCATCGTGGGACTGTGCCATCAGACCTGGGGGTAACCGGGCAGCCCCGCCTCCGCCTCCGCTGCCCGCTGAACGGCCATCGTTCCTGCCACCCAGGTCCTCGTGCCACGCCCTACGGAGTGCCCGATGTCCAATTTGCCGGATTCTGCAAAGTTCACTGAAAACGCGCCTGCGCGCCCGTAGAATCCCAGGTCAAACAGT # Right flank : CCCGACGGCGCACCAGGGCGGCGTCCCCATCCGCGCGGGTGGGGACGCCGCCCGGAGGGGCGGACTCAGTAGGCCAGCGTGATGCGGCTCTCCGGCTTGTTGATCACGTGGCCGGGCGCGGTACCTGTCGCGGAGGAGGTGACCGTCATGTGCGGTACTGCCAGGCGGGCGGCGCCCCATGCGTCGATGTGGGCGATGAGATCGTGGGCCAGCTCCTCGCCGCGTGGCCCGTATGCGGCCGCACCGAGCCGGAACGGGCGATCCGGGTCGACGCCTTCACGGGTCACGGTGAGGTAGGCGAGGGAGCCGCCTTCGACCAGGACGGGGCTGCGGCCCGGTGCGGCGGGCCGGTGGATCAGGGCCTGCTCCTCGGCCTCAGGGGTGACTTCGAGGCGGCATACGCGGTCGTCGCCGGCTGTGGCGCGCAGCCAGACTCCGTCGAACGACTCCTTGCCGCCGATCCGCTGGGTGGACAGGAAGGAACCGGCGGGCCTTTTTGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12017-11073 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPR01000046.1 Streptomyces anthocyanicus strain JCM 3037 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12016 29 100.0 32 ............................. GTCACGGCGGTGACGCTTCCCAGCTCCGTGCC 11955 29 100.0 32 ............................. CAGGAGCTGGCCGGCCGGACACAGGCCCTCCA 11894 29 100.0 32 ............................. CAGGACGACGAGGCGCGCTGCGTCAAGTGCGG 11833 29 100.0 32 ............................. GGCGTCGGCTCCTTCAAGGAGTACGGGGCGCG 11772 29 100.0 32 ............................. CCGAGCTTCGTGGCGACGTCGTAGGACGTGCG 11711 29 100.0 32 ............................. TCGTCCATATTCAAGGTGACGCTCTTGATCGC 11650 29 100.0 32 ............................. GCCCGCACCGCAGGTGGGCGACCGGCGCGTTC 11589 29 100.0 32 ............................. GTAGTGACTGACCTGCACGTACGTCTCAGTAG 11528 29 100.0 32 ............................. CACCTACCAGGCCTTCGCCGACGCCTCCGGCG 11467 29 100.0 32 ............................. CTGCCGTACAGCGGAGCGCTGATGCGCTCGGC 11406 29 100.0 32 ............................. GGGTTGGAGTGCATTGGAAAGGGGCCCGACCC 11345 29 96.6 32 ...................A......... CCGGCGGAGCAGCGCGTCTATGTCGGGCTGGT 11284 29 100.0 32 ............................. ATCTGGACCGGGTAGCTGACGCCGGTCACGCC 11223 29 100.0 32 ............................. CGGGCTCCAGTAGACAGGGAGGCGACGGCGGC 11162 29 100.0 32 ............................. GGCAACGGCGCGATGGACGACAACGGCCAGCA 11101 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCGCCCGCTTCGCCGCCGTCGACGTGGACGCCCTGCGGGCCGTCGCCACGCTGGCCGAACACCACGGCGGACGACTCGCAGTCACCCTGCCGACCGGACCCACCCACCCCGCGTCGCGCCGGACACCGGGACCGCAGAGGTCCACTCCGTCGTTCAGATCGCTTGCGTCGTCACCGTCACCGTCGGCAGTCCAGTCCGCGGTGACAGCGCGCCCAGCCCCCACGTTCCGGGGCCTGCAGTGACCACGAGCGGGGCGGGGCCTATCAGGGTGAGATCGTCCGTGCGCCCGCGTGGCCTGGCACATCCATCACCAGGGTCGGACAGGGCGCAGGGACGACCGCGTATCGTCAACGTCGCAGTCCCCGCTGAACGGCCATTCCTGCCACTCAGGTCCTCGTACACGCCCTGTGGATGCACACTGCCCGATGTCCAGATTGTCGGATTCTGCAAAGTTCACTGAAAACGCACCTGCGCGCCCATAGAATCCCAGGTCAAACAGT # Right flank : TACCAGCAGCCACAGAGGCGCCGTCACCGTCAGCGACCCAATCCTCGCCCCGTTCCGCCCTGGTGCGCATCAGCCCCGTCCCGAAGCACCACACGTCGAATAAGACGACCAGCAAGCACACACGCGAGCAGCCCGCTCCGGATCCCGTCCGACCACAGCACCCGGCGGCTCCCTCAACACCTGACTCACAAGCGCAACCCTTCGCGCCTCCCCGGACGAAGTCTCGCCCGGCAACTCGGCGGTCCGCTCCCGCAGCGCCGGCGGCCCGCCCACAGCCGCAGGCTCCGCCTGAGCAGAGGCGCCAGCTATGCCATCGAGCCGACGGAATCGTCCAGCCCGGCATCGTGGGACTGTGCCATCAGACCTGGGGGTAACCGGGCAGCCCCGCCTCCGCCTCCGCTGCCCGCTGAACGGCCATCGTTCCTGCCACCCAGGTCCTCGTGCCACGCCCTACGGAGTGCCCGATGTCCAATTTGCCGGATTCTGCAAAGTTCACTGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 29656-28899 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPR01000046.1 Streptomyces anthocyanicus strain JCM 3037 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29655 29 93.1 23 .....T...................C... GGCCGTGTTTACTGCGCCGGGTG T,G [29648,29652] Deletion [29604] 29601 29 93.1 32 .A......G.................... GTCGACTACGAAAAGGCCGCCGCCGCTCTCGA 29540 29 93.1 31 .............T..T............ GCAACCACGTGGGACAGTGGGGCGGCGTGAA T [29513] 29479 28 86.2 33 ..........T.T.T..........-... TAACCCGGACTGTGGTCAGGCGCTCGACAGGCT 29418 29 93.1 32 ...T.............A........... GAGCTGGCGAGGCGGGAGAAGCCCGAGGAGCT 29357 29 82.8 33 ........T...G.....A.......T.A CACTAGGGACCTCAAGGAGAAGCGGACCGAGGT 29295 29 93.1 32 T...............T............ ACGCGCTACGTGATGCAGCTCCGCGACGCCGT C [29280] 29233 29 93.1 32 ...T...T..................... AGCAGGTCGCCCGGTTTGAGGTTGGTGCGGGA 29172 29 100.0 32 ............................. TACGCATGCCAGAGCGCGGCGCGTGACTGCCT 29111 29 100.0 32 ............................. AACGGCTCCGCCCGCGCCCGCTACGGAGCCGC 29050 29 93.1 32 ..............T.T............ TTCTACGGCCAGTACCAGGACGGTATCTCTGG 28989 29 96.6 32 .........................C... GAGCAGGTCAAGAGCGCTTTCTCGGACCTGTC 28928 29 82.8 0 T............TG........A...T. | C [28903] ========== ====== ====== ====== ============================= ================================= ================== 13 29 92.3 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCGACGGTCCGCAGCTCGTCGGCGTCGTGCAGGATCTCGACGAGGTTCCGCGCGACGAGCCGGCCGTCGAGCGTCAGAACCCGGACACATGCCTCCTCCCGGGGATCCCATCGGGGGCGTGTCGCCCCGGCGAGTGGTCCGCGTACGTCAGCCAAGGTGCATCGACCGCCTCTTTGCCCTTAACGGTTGCGTGCTGTGACAGGGCATGACGCTAGCAAGCGGGCGGTGACCCTGTGAGGGTTTATGTGACATCAACTCACCTTTCCTGAAAGTGAGTTACAAGGCTCCGCTCGTCGTCCCTTCGTCCTTCGCCGCACTTCAGACCCGGCTTCTTCCGGGGGCTGTCCCTCACCTCCCGCGCAGAGGCCCAGGTAGATCACGACAGACCGGAAGGCCGCCGCGACGTCGACAGGACCCCGCAGCACCTCCCACAGCCGCCGCGTCCCGGCCGTCCACTCCTTCGGTGTGACACTGGTCGTGATCGGCGTCCGGCAACGGCC # Right flank : ACAACGACCCCGTCCGTGCGGCATGGCCGCCCGGCGGCGGCTCTCCGCGGAGGATCACGCGCCGCCCACCCGCGCCTCCGAAGTCGCAGACCCGATCGCGGACGAAGGAAGAGGCACCGCAAGTTCGTACAGCCGCCCCCGGATGTGGTGGACGAGCGGGGAGTCGGCGCCGTGGATGTCGGTGGCGACGGTCAGCAGGGCGGCGCCCAGGCGTTGGCGGTCCGGCCCCGGCGGCACGGCTCGCCACAGGCTGTAGGCGCGGCGGGTGGCCGCCTCGACGTCGGGGTGTCCCGGGCCCTGGATGGTGACACGCAGCTGCCCGGCGTGCAGGTACCAGGACAGGCCGGAGGGATGGTCGCCGGCGAGGGCAGCCAGGTAGCCGCGTACTTCGCGGACCTGGATCGTGTGCAGGTGCAGTTCGCCGTACTCGGCGGTGGCGTCCCGGTCGATCCGGGCGGCGAGAGCGGCGGCGTCCGGCAGGCGTCCTGCCTGGGCGATCT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 39602-39933 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPR01000046.1 Streptomyces anthocyanicus strain JCM 3037 sequence046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39602 29 75.9 31 A...GGA.T..G..T.............. ACCAACACCAGTCCGGCGGTGCGTACGACGA 39662 29 100.0 32 ............................. ATCACTCGGTTTGTGACCCGGCCCGCCGGGTC 39723 29 100.0 32 ............................. GCGCCGAAGGGCCGCCCGACTTCCCGGCCTGG 39784 29 96.6 32 .......G..................... GGCATCTCAGCTGCGGGCGGCTGGCTGTGGTC 39845 29 100.0 32 ............................. GCCCTCGGTTCGGTGGTGCCCAGGTACAGGGC 39906 28 75.9 0 .......T....T...TT...-C..G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 91.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCCGCGCAGCCGCGTTGAGCGCGGTCGCCTGCTATTTCACCCGCTTGCCGGCCCGCCCCCAGCCGGGCGCCGACCCCACCCGCACCGATCCGTTCACCCGCAGCATCCAGCACCTCGCGCTGACCGCGACCCCCTCCGCTTCGGCAGACAGGAGAACGGCTGCCCAATTCCTCTCACAGGCGCTGAACAGCTCCGGCTGGTACCACGGCCTGCCGGTACTGGCTCAGGTCGAACCAATGGCGATATCTCCCGTCCGGGACATCTTGCTCGTACATACCCGCGCCGCCCTGGAGCGCTGACCTTCGAGGTGACGACGGAATATGCACGCCTATGACAGGCCGGTGGGATCGGGCTCCCTCGGATGTGAGTAGTCGCGATACAGATCTGATCGGCACGCTGCGCCACGTCGGGCGACCCATTCCGGACGCCCCGCTCAACGCGACGTGGCCCGTGGACGAGCACCTGGCCGCGCAGCTCGGATGCGGATGCCGGGCTGGTCG # Right flank : CGATCCATGGGTCTCCGGCCAATACCACCAACGACCACCGGCACCAACGTGGGACCCAGTCAGCGCCATGGAGCTACTTCATGCTCTGCCCCCGGGAATGCGTCGACTGCGGGTGTGCGACAGCAGCCTGCTGGTGCTGCACGATCCGCTTCGCCTGTTCCTGCTGGACGGTGAGGCGTCCCGTCGTCTCCCGGGCGTGCAGGTCGGGGAACTTTTCGGCGATCGCAGCGCGCAGGGCCTTCTCGGCTCGGGCTTTGGCAGCCTGGGCGCGGTGGCCGGCGGCGAGCTTCCGGAACTCCCCGGCCTGGCGGGTCGCGCGGCTGACGTCGTCGCGGTCGCGTTTGTCCATGCCGTGCCCGTGCCGGGCGGCGGTGGAGCGCATCTCCAGGAAGCGCTCGGCGGCCTGGTCCGCGCGGTCGGGCACCGGCTGGCCTGCTGCACCGAGGGCTTGGGCGATCCGGTGGTCCCGGACAGTCTCCCATGCCCTTTCCAAGGCCTGC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 44883-44426 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPR01000046.1 Streptomyces anthocyanicus strain JCM 3037 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44882 29 100.0 32 ............................. TGCACGGTTGCGACCAGCGCACCGGCCTCCTT 44821 29 100.0 32 ............................. CCCGGCCGGTTCATCAAAGAGGGTCGCGACGC 44760 29 96.6 32 .....T....................... GCCGGCGTGGGCCATACCGCGGGCACCCTCGG 44699 29 100.0 33 ............................. GGTCCGGCGAGGCAGGCCCCGGTCAGCCACGCC 44637 29 100.0 32 ............................. GTGAAAGAGGTGTGCTCGAAGGGTGAGCCATG 44576 29 93.1 32 .............CG.............. AGCTCGTACTCGGTCTCCAGGGTGCCGACCCG 44515 29 89.7 32 ..A........G.A............... ATCACCGGCCCCAGCCACAAGAAGCGGCCGGC 44454 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.0 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GTCTCAGCGGTTGTAAAGATGCAGGTCAAAGAG # Right flank : TGAGCCAGGCAGAAGACCGAGGCCGATCGTGGCTGCTCCCCGAACCCGCGATCATGCCTGCGGCCGCGGCCTGTTTGCTATGGGCGCAGTTCGGCCGAGCCGGAGCACCGCAAGGAAGCGCCCCCGATCGAGGGGCTTCCACCGACGGCACGTGCCTGAGCCTCTCCTGGAAGCATGATCAAAATTAGAGTGAGGACAAAGGGGGTTCCCCTCGGGAAACCCGGGCAAGCCGGGAAGACACAAACGCACAAGGGGCGAGGAGCGGGGAGGGGCGGATGTGGCCTGGCTGACGAGGATCGTCGCTGACGAGCAGGTCGAGTACCGGCTCAAGCAGCAGGCCGGGTGCGCAGTCGTGGAGGCCGGGGAGGACGAGACGGTCGTCCTGGACGCCGTCGAGAGCCGGGCCGTCGACTACCGACTGCGGCCGGAGGGCGGGGCGGCTCTGGTCTGGATGGGCAGCGGTCTGGAAGCTCTGGGACTGGTCGAGGGCGCCGCCTTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //