Array 1 73046-72296 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRPG01000014.1 Providencia rettgeri strain GMR-RA257 NODE_14_length_118498_cov_24.394470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73045 28 100.0 32 ............................ CAATCCATTTGAGTGCAATCTAAGTGGCTAAT 72985 28 100.0 32 ............................ TGACTTAGTTGACGCAGAGCGGGGGTATCGCA 72925 28 100.0 32 ............................ TCAATAAATGTTGCTGATACAGAATAAACACC 72865 28 100.0 32 ............................ ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC 72805 28 100.0 32 ............................ CTGAAACATTAGAAAGTCGTGCTCAAGATATT 72745 28 100.0 32 ............................ TTACTCTGATGCTACGTTCGAAAAAGCGTGGA 72685 28 100.0 32 ............................ GGATCGCAATAATTCGACTTCAAGCTCTACTC 72625 28 100.0 32 ............................ AGCCCACTCGTAAATGAGCTGTGTAATTAACT 72565 28 100.0 32 ............................ AGCGAATATCAACGCACCCACCGTGTCGATTT 72505 28 100.0 32 ............................ TTGTGCTTTCTATTGATCATCCCTGATGTTGA 72445 28 100.0 33 ............................ CGATGATTCAACACCAACAAGCGCATGTAACGT 72384 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 72324 28 89.3 0 ...T......A.........T....... | G [72298] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCGGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGGTAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATAATTATTCACAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACTAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATGCTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 82674-81683 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRPG01000014.1 Providencia rettgeri strain GMR-RA257 NODE_14_length_118498_cov_24.394470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82673 28 100.0 32 ............................ TAATTTAATTTCCATTGCTGTTTTCCTCATCT 82613 28 100.0 32 ............................ TTTGACACCTTTTTCACCGTCAAAAACAACAA 82553 28 100.0 32 ............................ TACGATAAACATCAGTTAGTGGGTATCCAAAC 82493 28 100.0 32 ............................ ATGAGCACGCTAAGTTGATTCGGCGATAAACA 82433 28 100.0 32 ............................ TGACCACGTCACCGTTTCACCAACTATTGATG 82373 28 100.0 33 ............................ TGTTTCTAAGTACCGAACAAGAGAAAACTTTGT 82312 28 96.4 32 ............G............... AGTGCAAACGTCGATTAATGGCAGCGTAGTAA 82252 28 96.4 32 ............G............... AGACATAGAGCTATCAAGAACCGCCTCAGCTC 82192 28 96.4 32 ............G............... GAAAAGATAAGTTCTTGGGCAGACCTGAGACA 82132 28 96.4 32 ............G............... TTTTCCTTTGTTTTATCTATTCACGTAAAACA 82072 28 100.0 33 ............................ CTGCAAATGTCGAATTGCTAGGCGCGGGGAAAT 82011 28 96.4 33 ............G............... ATCGCCGTGAAATCAGACTCAGCGAATCGAATG 81950 28 96.4 32 ............G............... CGAAGTGGAAAAGAAAAGAGCAACTATTGATT 81890 28 100.0 32 ............................ GGAACTAACGCGGCTACGCCATAAATTATCGT 81830 28 96.4 32 ..........G................. TCATGCTGATGAATGGGATCAGGATGTTCTCT 81770 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 81710 28 89.3 0 .............A........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.5 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGCACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //