Array 1 42083-39431 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKES01000024.1 Escherichia coli strain MOD1-EC309 MOD1-EC309_24_length_67789_cov_66.1391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42082 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42021 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 41960 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41899 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41838 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41777 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 41716 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 41655 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 41594 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 41533 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 41472 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 41411 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 41350 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41289 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41228 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41167 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41106 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41045 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 40984 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 40923 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 40862 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 40801 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 40740 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 40679 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 40618 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 40557 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40496 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40435 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40374 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40313 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40252 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40191 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40130 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40069 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40008 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39947 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39886 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39825 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39764 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39703 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39642 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39581 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39520 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39459 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43816-45371 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKES01000029.1 Escherichia coli strain MOD1-EC309 MOD1-EC309_29_length_45523_cov_68.5583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43816 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 43877 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 43938 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 43999 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 44060 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 44121 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 44182 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 44244 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 44305 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 44366 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 44427 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 44488 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 44549 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 44610 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 44671 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 44732 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 44793 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 44854 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 44915 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 44977 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 45038 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 45099 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 45160 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 45221 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 45282 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 45343 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //