Array 1 51-977 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVPQ01000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GMR-S-1454 contig_60_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 51 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 112 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 173 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 234 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 296 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 399 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 460 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 521 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 582 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 643 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 704 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 765 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 826 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 887 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 948 29 96.6 0 A............................ | A [974] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTGGATTATCTGTATTTTACGGAAGTGGGCGCGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34-795 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVPQ01000168.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GMR-S-1454 contig_152_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 95 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 156 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 217 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 278 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 339 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 401 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 462 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 523 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 584 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 645 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 706 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 767 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCACCGCGCTGATTAACGACGGACTGTTACAG # Right flank : GAGGCGTACAGGCTGTTAGATGAGAAATTACCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5359-6851 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVPQ01000165.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GMR-S-1454 contig_150_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5359 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5420 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5481 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5542 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5603 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5664 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5725 29 100.0 31 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCC 5786 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5847 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5908 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5969 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6030 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6091 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6152 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6213 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6274 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6336 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6397 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6458 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6519 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6580 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6641 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6702 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6763 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6824 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //