Array 1 4082085-4080469 **** Predicted by CRISPRDetect 2.4 *** >NC_021902.1 Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4082084 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 4082023 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 4081962 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 4081901 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 4081840 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 4081779 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 4081718 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 4081657 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 4081596 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 4081535 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 4081474 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 4081413 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 4081352 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 4081291 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 4081230 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 4081169 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 4081108 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 4081047 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 4080986 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 4080925 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 4080864 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 4080803 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 4080742 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 4080681 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 4080620 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 4080559 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 4080498 29 100.0 0 ............................. | A [4080471] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4099940-4098754 **** Predicted by CRISPRDetect 2.4 *** >NC_021902.1 Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4099939 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 4099878 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 4099817 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 4099756 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 4099695 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 4099634 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 4099573 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 4099512 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 4099451 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 4099390 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 4099329 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 4099268 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 4099207 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 4099146 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 4099085 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 4099024 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 4098963 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 4098902 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 4098841 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 4098781 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //