Array 1 85440-85828 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMO01000010.1 Staphylococcus pseudintermedius strain SL/066 NODE_10_length_123833_cov_158.372_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 85440 35 100.0 37 ................................... TACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 85512 35 100.0 37 ................................... TATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 85584 35 100.0 36 ................................... TAAGTTAACGGCATTACCTAATAAAAATATTTTAGG 85655 35 100.0 34 ................................... CTCATCTTTCATGTCACTGATTAATTCATTTGTA 85724 35 100.0 36 ................................... CGGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 85795 34 91.4 0 ............T.................-...G | ========== ====== ====== ====== =================================== ===================================== ================== 6 35 98.6 36 GATCGATAACTACCCCGAATAACAGGGGACGAGAA # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : GTGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 94792-94553 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMO01000010.1 Staphylococcus pseudintermedius strain SL/066 NODE_10_length_123833_cov_158.372_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 94791 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 94722 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 94648 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [94640] 94576 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : TTAGATAGCTCTTTAAAGCCTATCAAATCAATAGTTCAAAGGCAAAATTTACTGTCAAAAATAGTGACAAATCACTTGTACTATAAGTGCAGAATGTCACATTTTTTGACAACTAAATTTCAGCTATACTCTAGTTATATTATACTATATTTCCCCATGCCTAAGCTTGTTTTCATACCTGATCCAGAAAATTCGCCAAACTTCAATAAAAAATGAGTTAGTTGTAGAAAAGGTAAGGGTCCTTTAATTTTAAACACTATTTCTCCCGTAAATGAAGGGATTTTAACTTTTTCTAAGTTAAATCGTGTACTTTTCAATTTATAGTCAACAATATTAATATTTTTTTCTAAAAAATCTAATGTTTCTTTATCGTACATTTTATATTCTTCGAAAAAAGCATCAAATTGTATCATAATACTTCTAAAGAAACGTTTAACCTCAGGAAAAATCATGTAATTACTCTGATATTTAAAAGACATAGGTGTCTGTATATTAATTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //