Array 1 951221-952653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030181.1 Salmonella enterica strain SA20030575 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 951221 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 951282 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 951343 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 951404 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 951465 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 951526 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 951587 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 951648 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 951709 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 951770 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 951831 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 951892 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 951953 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 952014 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 952076 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 952137 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 952198 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 952259 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 952320 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 952381 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 952442 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 952503 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 952564 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 952625 28 93.1 0 ............T..........-..... | G [952642] ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 968940-970434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030181.1 Salmonella enterica strain SA20030575 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 968940 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 969001 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 969062 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 969123 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 969184 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 969245 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 969306 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 969367 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 969428 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 969489 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 969550 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 969611 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 969673 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 969734 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 969795 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 969856 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 969917 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 969978 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 970039 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 970100 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 970161 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 970222 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 970283 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 970344 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 970405 29 96.6 0 ............T................ | A [970432] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //