Array 1 6-1378 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000058.1 Streptomyces sp. SID5474 SID5474.c58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 ............................. TCGTCCTCCGCGCGTCCGAACGCCGGGCCCGG 67 29 100.0 33 ............................. CACGGCGATCATCACCGACGACTACGACACGGC 129 29 100.0 32 ............................. ATCCGCCCACAGCCTCGCGAGCGTTGCGTTCG 190 29 100.0 32 ............................. CAGGTCGGCGCTACCCCACCAGCTCACGACGG 251 29 96.6 32 ............................T CTGCGGTGTCGTGGCTGAATCCGATCGGAAGC 312 29 100.0 32 ............................. CCTTGGTCGTCGGTGCGGACGCCGCTGGTGCA 373 29 100.0 32 ............................. TCGGACATAGGCGTGATCGTCGTCATCGAAGA 434 29 100.0 32 ............................. CGGCCGGGTTCGATGGCGCACAGCTCGGCCGC 495 29 100.0 33 ............................. TCGATCCGGCCTTGGTCGTGCAGCTGGGCCCAC 557 29 100.0 32 ............................. GCGCTCGCTGGCGGCACCGTGATCTGGGCGGA 618 29 100.0 32 ............................. AACCTTCCTCCGCGACACCATCGACGTTGCAC 679 29 100.0 32 ............................. TCACGCAGGAACGCAAGGCCCAACGGCGTGCC 740 29 100.0 32 ............................. CCCGAACGCGGACGACACCAAGCCGAAACCCG 801 29 100.0 32 ............................. GATCATGCCGATATCGCCCCCGTCGGCTGGCT 862 29 100.0 32 ............................. ACCGCCACGGCCCCGGGCTCCGAGGTCAAGCC 923 29 100.0 32 ............................. CTCAACTGGTAGTGCTGGGTCGCGGCGGTGTT 984 29 100.0 32 ............................. GTGCGCGGCGAGGACGATGTAGATCCGGACGG 1045 29 100.0 32 ............................. GCCCAGGGGTCACAGTCGAGTTGGGCCCATGC 1106 29 100.0 32 ............................. GGCAAGAAGAGCGGGAGCGCCGGGAGCACCGG 1167 29 96.6 32 ...........................T. GCGGTGGACAGGGCGCTGATCCGGCGGTCCTC 1228 29 100.0 32 ............................. AACGAGGCCGCCACCGAGGCGACCCCCGGCAT 1289 29 100.0 32 ............................. GTCGGCCGCAAACTCCAGGAGTGGGGAACGGA 1350 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GAAGTCCCCACACGCGTGGGGGTGAGCCG # Left flank : CCCGGG # Right flank : GCGGTATCGATGTATCGCGCGGGAGCCGACGAACGAACCCTTGTCCGGCTAGCCGCCCCCGCTGTGACCACCGAGGGGCCAGCGTTGCGGGCCACCATCGGTACCGCCGACGTGATGAGCGACGAAAACGTCATCCTCGGCGGCGGATTCTTCGCGGCCAGCGGACACTACGCGGGATCGTGGACCTTCGAACTCAACCCCGCCGCCCACAGCACATACCTCGACTTCCTCCGCATCGAATCCGACCACCGAGCACAGGGATTCGCATCCGCTCAGACCGGACACTTCGAGAACTGGCTGATCTCCCAGGAGCACCGGACGGTCAGCCTCCTCGCGAACATCGACATCGGCGGCTACGCATGGGCCCGCAACGGCTACTCCTGGACCGACGAAGACGGGACCGGGTCCGCCGGGGCCGGCGCGACCACGTCCGAGCGTTGCCGGTCGCCGGGAACAGCCTGGATACCCGGGCCAAGGGAGCCGTCCGCGACGGTCTCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACACGCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2806-2046 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000008.1 Streptomyces sp. SID5474 SID5474.c8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2805 29 100.0 32 ............................. GAGCGCTTCCCGGGTTGGCTCGATCAGCCGAG 2744 29 100.0 32 ............................. GCGCCCGCGTCGACGCAGGCAAATGCTCGCTG 2683 29 100.0 32 ............................. GACCTGCGTGTCGCCGTAGGTGCGGTACACCG 2622 29 100.0 32 ............................. ACCCTGACGCTGACGTGCCAGATGTGCTGGTC 2561 29 100.0 32 ............................. CGGCGGGCCGGCGATCCGCGCATCTGGAACGA 2500 29 100.0 32 ............................. CTCACGACGATGCCGAGCGTGGTACAGGGGGC 2439 29 100.0 32 ............................. TCCCACGGCATGTTCGCGCGGATCTCGCACAG 2378 29 100.0 32 ............................. GGTGTCGAACACCCCGTGATGTCCGATGAGCT 2317 29 100.0 32 ............................. GAGGGGACGCGCGGATGGATGACACCGAACCC 2256 29 96.6 32 .....T....................... GCGCGCTCGACCTGGACCACGAGGGACGGCAG 2195 29 96.6 32 .....T....................... GCGTACTACGGGGCCTGGACGGTGCCGGTGCT 2134 29 93.1 32 .............GA.............. GGCCGAGAGTGGCCAGCGGTGCGCCTGCACGG 2073 28 89.7 0 .............GA......-....... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 GAAGTCCCCACGCAGGTGGGGGTGAGCCG # Left flank : CCTC # Right flank : CGTGCACGTCGTGCTGGAACGATCGAACATCGGAAGTCCCCACGCGCGCCGAATACACGACACCGCCACCTGGATGTCGTTCACGCCGGGCAGCGTCGTCGCGGTCAGGAACCGCGAAGACTTGGAGGCGTGCACCAGGCCGGCTCCGGCCATCTCTATCCCAGCCGACCTGTCACATCACGGACTTACGCGCACTATCCGATACGCCCCGCGAGTTGGGTGAGCCGTATCTGGGACCGGGCAAGTGTCACGTCGAAGCGGGTCTCCGGGTCTGGGGGACCGTGGGGGCGGCAAGCCGGCGGGCCCACTTCAGGAGGTGAGTGCTTGCATTTCGCCTGTGCGGATGTCGCCGACCGTGGTGGTGCGGGTGGCTGCGAGGGTGCCGGTTTGGCCGCCGCCGGTCCAGGTGATGGTCCAGTGCGTGGTGGCGGTGACGGTGCGGACGCCGGGGCGGGTGTAGGTGTGGCCGCAGTCGGGGCTGGGGTGGGCACCTCGGTTGG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACGCAGGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 27010-26675 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000155.1 Streptomyces sp. SID5474 SID5474.c155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27009 29 100.0 33 ............................. AGGCAGTAGCCGCCGCAGGGAATCGCTTCCTCC 26947 29 100.0 32 ............................. CGAGACATGTGGCGTTCCCCGGAGGGTGGGGG 26886 29 100.0 32 ............................. GGCGCGGGCATCACCGGCATGGTCCAAGGCGT 26825 29 100.0 32 ............................. GCCCAACCGGGTCGCGAACGCGTGGAGTTCGG 26764 29 100.0 32 ............................. TGAGGAGGGCGGCGGTGTACTCGGCGGGGTAG 26703 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GAAGTCCCCACGCAGGTGGGGGTGAGCCG # Left flank : CCCCGACGAAGCCGCCGCGCTGTTCACCGCGCTCGACGTGTTGCCACCCGGAGTGTGCGACGTCGCGGTGTGGAGAGTCGACGACATCGGTCCCCACCGGACCGTCCACCAAGGCGGTCGGCAAGCCCACATGCACGGAGGAGTGGCCCGCGTGCCGTGAACCACGAGCGGCATCCTGACAGGAGAGGCCCTCGTACGGGCGAGATCGTCGGGCCTTGATCGGTACTTCCGGCTGCTGAGCGACCGGAGGCAGGGCTCGTATCCTTGCATCGTGACTGCGGCGGAATCGAGCCGATCTCGTACCGGACGCGTCGATGACGGCGGGAACTTCAAGGACAGACACGCCTTGAACCGACACGTTTGTCCTGCTGACGCGTAGACAGGACCAAAATATGCGACAACGCTCAGCTCGAAAGTGAAAACAAGCAAGAAGCTTGCCGCAATGACCTTGTTGGCGTTACGAATCGGCAAAGCCTCCAAGAACCCGCAGGTCAGCAAGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAGTCCCCACGCAGGTGGGGGTGAGCCGGTGTGCGGCTCGGTCTCGGCGGCCTGGGGCAAGAAGTCCCCACGCAGGTGGGGGTGAGCCGCCTTCATGGCTGCGGCACCGGCGGCATCGGCCTGTCGCTCGCCCGCGCCCTCGCCCTGCGCGTGGAGGGCATCGACCTCTCCCCGGTCGCCGTCGCCCAAGCCACCAGCCGCCGCCACGCCTTCCTCGGCGCCGACACCGACCGTGCCGTCTTCCGCGTCGCGGAACTGCAGGACACCGGCCTGCCCGACGCGGGCGCCCACGGCATCGTGTGCGTGGACGTCCTCGGCCGCGCCGCCGGTCGGGACGCGGTGCTGCGCGAGTTCGCCCGCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACGCAGGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 5-339 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000138.1 Streptomyces sp. SID5474 SID5474.c138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5 30 100.0 31 .............................. ACGAGAGCGTCCGGGGCAACGACACGGTGAT 66 30 100.0 31 .............................. CCACATACACCGACGGACCCACCCGAACCCT 127 30 96.7 29 .........T.................... GGTTCGACGCTTACGTGGGCAGCCAGACC TC [155] 188 30 96.7 31 .............................A TTTCGCCGTCCGTCATGCGCGCGGTCCCGGC 249 30 100.0 31 .............................. GTCAATCCCCTGGCCCATCTCGCGCGGCTAC 310 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 6 30 98.9 31 GAAGTCCCCACGCGAGTGGGGGTGAGCCGG # Left flank : CGGAG # Right flank : GCGGACCATGACCTTGGGCCGCTTAAGCACGGCACCAACAGGCACACGGGGACTGCCAGCATGTCCGGCGGCGGCGACGGCAGCGGCCCCCAGCAGCAGTCCCAGGACGACACCGTCACCGACCACGTGCCGGACTAGGGAACCCGATGACCGGAAACCCCGTGGTGGTCGTGACCGGCAGGGACGACACGACTGCGGACTGGGTGGTCGAGGAACTGCACGACCGGCACGTGCCGGTCGTGCGGCTCGACCCCGCAGACATCGGCGAGTCCCTGATCATGGACGCGCGCATCGGCGGCGGGTCGACCACGTGGCGGGGACGGATCACGACGCCCTCCCGCGTCCTCGACCTCGCCGGGGCTCGCTCCCTCTACTACCGACGCCCCTCCCCCTACAGCGTGACCTACATGCATCTCGATCCCCCCGACGCCCTGTTCGCCGAGAACGAGGCCCGCTACGGTCTCGGTGGGGTCTTGTCCGCACTGCCGGGCTGCCTCTAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACGCGAGTGGGGGTGAGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2740-3283 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000138.1 Streptomyces sp. SID5474 SID5474.c138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 2740 27 100.0 35 ........................... CGCTCTACAACCTCGCGACCTTCGTCGCCCGCGCG 2802 27 100.0 34 ........................... CGGCGGACTTGGACTTGAGGACGAGCTTCACGCC 2863 27 100.0 34 ........................... TGGCGGGCTGCGAGTCGGCCATTCTGTGGGGCGA 2924 27 92.6 34 ........T.T................ CGGTCGCGGCCATCGCGCTGGTGTGGGCGGTCCT 2985 27 100.0 34 ........................... CGCGCTCGACCTGAGCGCGGGTTTCCGCGTTGCG 3046 27 100.0 34 ........................... TGGCGTGGAACGACGCGATCACGGACCCGCCGTA 3107 25 92.6 34 ....................--..... CGTGGTGTTCGGCGTACACGTCCACGTTCTTCGC 3166 27 92.6 34 ..............C..A......... CGTACAGCCACGCCACCCGCATGACCACCGGCAG 3227 27 88.9 4 T............C............T CGAC Deletion [3258] 3258 26 77.8 0 .G.........A..G.....T.-..C. | ========== ====== ====== ====== =========================== =================================== ================== 10 27 94.5 31 GAAGTCCCCACGCGAGTGGGGGTGAGC # Left flank : CCTATCACTGGGCAATGACCGCCAAGGAGGACGAGGACACGACCACCCGCGACACGATCCTGTCCCCCGTCTTCTATCGCGAAGCCACGGTGTCGGCGTTCCACGCCCGGTTCGTGGCACAACTCGCCGCCCCGACCGCGCAGATGGTCGACCCGGCGGGCTATCCCGAGGGGAGCGTGTTCCTGGTGGACACGGCAAGCGGGTCGTCGGCCGCGATCGGCCCGGACGGCGACGGCTGGACGGTCACGCAGTCCGGACCCGATCGCCTGTGGGATCGGATCGAGGATGCGGTGATGAAGTGGCGGGCAGCCGGCTCGTTCGCCATGACCGAGTTCGAGATGACGGTGCACGCAGACGAGCAGCTCATCCGGCATGCCGCGACGGGATTGAGATTCGTACTGCCGCACCTGTAGCAACCACTGACCTTCACCCGTGAGTGCGATGCGCAAGGACACCCGTCCTGCGAAGCTGGGCCCATGAGCAGCCTCTTCCACTACACG # Right flank : CGCGCTGGGAGGGGAGGCCTCGTGGTGTCGGTCGAGCCTTCCGCGTGGGCGTCGAGGGTTGTGGTGCTTCGGGTGGTTCGGGGTGTGGTCGTCGTGTGTCGGATTTGCTTCCGTGGGTTGATTTCGGCATTCAATGTGGTATCGGGGCATTGTTTCGTGTCGGTCGGCTCGCGCATATCGGACTGTTTCTTCGAGGGCGTCTCGTGGGGTTTGTGACTTTGGTTCTCCGTCGATAATTTGCCCGGATCCATGATCGTTGTTCCGGGTGGGCCTTCGGCGGTGTGGGGCAGGGCGGGCGTGGGTGGGGCTCGCCGCCTGTGTGGTGTGCCCTTGGGGGCGTTCGTGTCCGGTGGGAGTGCGGGGGTTTCGGGGGTTCATGGGGATGAGGGCCCTTTGAGGGCTTTTTCTTCGTCCCTGTCACAACCCGTTCCGCACGGGCACCTACCGAGTGTGCGGATTGCGCCACAGAACAATCGCGTCCGCATGGCTGAAACAGTATG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACGCGAGTGGGGGTGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 15384-15595 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000138.1 Streptomyces sp. SID5474 SID5474.c138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15384 29 100.0 32 ............................. TCGCCGGGACCGATCAACCCCAGAAGCGGTCC 15445 29 100.0 32 ............................. GTGTCGATGGCGGAACCGGCCGCATGCGGCAT 15506 29 100.0 32 ............................. GAGCGCAACCAACACTCGAAGAGCGACGCACA 15567 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GAAGTCCCCACGCAGGTGGGGGTGAGCCG # Left flank : TGGGCGGAATACCTGCGTCAGGACATGACGTCGTCGATCGTCGATGTGGCCGCACGCCTGGGCGAACTGCGCCTGCGCGACGGGGACGTCCGCGGTGCGAAGCTCGCCCTGAGCAAGGGCCTCGAGGTCTGCCCCGAGTCCGAGATGCTCTACCGTTTGATGTTCCGTGCCGCCTACCTCTCCGGCGACATCGACGAACTCGAGGCGTACGCCGCCCGCCTCAACCGCCTGCTCGACGATCTCGGCTGCGACATGGAGGACGACACCATCCACCTCCTTCGCTCCCTCCTGGAAGCCCGCCGCAGAAGCGCCAACTCCCGGGCTGCGGGATAGAGGGGCAGCCACCGTCGACGATCCACCAAACCGACCCGGAGAGGCCTTCCGAAGGAGGCACGCATGAACCCTCGACGGAGAAGCCCAATCAGGCAAGCCATCGCCTGATTACCCCGCGTTCCGATCACGGATCGGTAACGACCTCAAAGCGCCGCAGGTCAGCAAGG # Right flank : GCCGGACCCGGCTTGATCTTGTTCGGCTAGCACAGTGCCCGCTTGCTCCGGGGCGGTTCGGTGAAAGCCCGTCGGGTCCTTGCGGACCACCGCTGGCATCCGCCGGGTGCCAGTGGAATCACGGTACGCCCTGGGCAGCAAGGCCCCGCTGCTGGACTGCGTTACGGAGCCGAAGCGTGCGGCGATGCTCACCGCAGTGATGCGGCATCTTGAGGCGAAGGCGATCGACGAGGCGCTGGAGGGACCCCGAGCCGGGCGGCTGCCCGGCAAGACGGTGGTCCTCGCTCCCTGACCGCACCCGACCCGGGCCGTCCGCTGTTCGCTCTCCCGCCGGCGGGCGGCCCGGAAGCGCGCGACGAATCCGAAGTTCGCACAGCCAAGGCGTCGACTGTCGACGGGAGTTGCCTTGCCTCGAAGTCGAATATCGGTGTGCGCAAGGTAAATTGGGCTTTCGCGCAGAGACCACACTTTCGCTCCGACCACCCCGACCACATTGCCCC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACGCAGGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 4 20056-20266 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000138.1 Streptomyces sp. SID5474 SID5474.c138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20056 28 92.9 33 A....T...................... GCTGTGCCCGGAGCACGCCGACAAGATCCGGCG 20117 28 100.0 33 ............................ GTGGTTCATCGGCTTCTCGTGCTTCCTGATCAA 20178 28 100.0 33 ............................ GAGTGGAGGAGGCGGCGACGGCACCCGTCTCGC G [20200] 20240 27 96.4 0 .....................-...... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 34 GAAGTCCCCACGCGAGTGGGGGTGAGCC # Left flank : GCAGGGATGGTCCGCCGCCCCAGGACCAGGGCGTCCAGGCGCAGTTGGGTACCCGGCAGTTCGTACTCGAGGAGAAGGTGCAGGTCGCCCAACCCCGCGTCGACGAGCGCGGTCAGCAGCGGCGGCCAACTGTTCTCCCAGCTGCTTCGTTCCGATGCGCCGACCGGCCGGCGATGAATGCGCTGGAACTCCCGCGCGGCGTCGGTTACGAGATCGGAGATCGCCTGCTGGGCCGCCTCGGTGACCGTTCCGCTGAAGACACTTCTCCGGGCACTCATGGAGACGTTGTCTACCAGGAAGTCCGGCGGATCGCTTACCGCACATCGCCGGGAGGAAGGACGTTGCGGGGCGACGGTTGCCGCGAGGTGTCGGACTAGGCTCTCCGGTATGACACGCGACGTGATCAAGTGTGGCGTATCAATCAGGCAAGGCGTTGCCTGATTAACTCGAACTTTGGTAACGGAATGATAATGCTCGTGTGAACCCGCAGGTCGGGAAGG # Right flank : CGGTTCGGGCGCTGTGCCTGGAGTACGCGTTGGGAAGCTGCGTGGTCTCCACCCAGCGGCTGTTGGCGGTGGGGTAGGTACTGGTGCGTCAGGGGGTTCCCCGGGCTGGAAGCGTCGTCGACGGCGTCGTCTCGCGCCGATCGTCAGGTCTACCTGATACGGGCCGCGTCGACCCCACCGCCCCAATCCGGCCGGAGAAGCGCTGGGAATCCAACTGCGGTGATCACTGGGAGTCTTGATAGGGTCACGGAGTCGATCCACGCGGGGGCGCCATGAGACGACGACGTTCCGCAGTCATATCCGGCCTGATCCTGGCGGCAACGCTGGTGGCCGGATGCAGCGACGACGGAGACGGGGGCGGGATCCAAGGGCGTCCGGCCTCGCCCGACCAGACCGCAGCCGGGAACTCTGCCGCGCCGAAACCCGATTCCGGACGCCTGTTCGAGAGGGGGACCGTGACGGTGATGTGGTGCGACGGACCAGCCGGGGGCTTGAGCACG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACGCGAGTGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 973-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000185.1 Streptomyces sp. SID5474 SID5474.c185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================= ================== 972 29 100.0 32 ............................. GAGGACAAACTCCTCGGCCCCCTGACAGCCCG 911 29 100.0 32 ............................. ACCGGAGAGACCGCATGAGCGACGACAACGAA 850 29 100.0 31 ............................. TCATGGGCGCGATGGTCTCCGGTGCACAAGA 789 29 100.0 57 ............................. TCGACNCACGCGTGGGGGTGAGCCGGTCATGGGCGCGATGGTCTCCGGTGCACAAGA 703 29 100.0 32 ............................. TCGACGTCGTTGGTGATGTCGTCGGCGCCGAG 642 29 100.0 32 ............................. TGATGATCGAGACGCTGAAGCGGTCTGCGTCC 581 29 100.0 32 ............................. GCGTGTGTGGGTTCCGAGATGTCGTCGATCGA 520 29 100.0 34 ............................. TCGATTCCGTATCTCCCGTGCCGCAGGAGAACAT 457 29 100.0 33 ............................. GGGACCCGGGCCCGTCCCGGCGTCCTCCCCGGC 396 29 100.0 32 ............................. CGGATGCCAGCCCCGGACAGCGACACCCCGGC 335 29 100.0 32 ............................. ACGCGCGGCGTGAGCCCGAGTTGCTGTTCGCC 274 29 100.0 32 ............................. GCCGGACACGCCGCCCTCGTTGTGGCGATGGC 213 29 100.0 32 ............................. GCGCCACCGCCGCCGACACGTACGCACGCGAC 152 29 100.0 32 ............................. GTATCTACGAGACGCATTGCGTCGGCGGCCGG 91 29 100.0 32 ............................. TCGTCCTCCGCGCGTCCGAACGCCGGGCCCGG 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================= ================== 16 29 100.0 34 GAAGTCCCCACACGCGTGGGGGTGAGCCG # Left flank : GTCACCACCGTCCCCCACCGCGCCGGTGGTCCCCTGCGCCCGGCAGGACTCCCCATCGGTGCTCGAGCTCTCGAAGGCGCCTGGGAACGCCTCCGTGCCGCCCTGACCGAAGCCCGAGCCGGCCACCCGGACCCATCCCCTCCCCCGGACCTACTCACCGACTGGCGCCCCAGTCCGCCTAACTAGGCCACCGCCAACGGCCCGGCGCAGATAGGGTGCGCAATCTAAACGGACGCGCGACCGGTTGAGGGAAGTGGAGAGTGCGGCCGGAGCCCGCAAGACCGTCTGCGACGTTCGACGGGACTTCGACTCAACCACGAGAGGAGTACAAGCAACACTGCCCCCACAGCGCCACCGCAGTTGAAGCTCAGAACCGCCTGCAACGACTCCCGTCGACAGGAAAAGCCTGGTCAGATGCCATTCAGGAAGACCTCTGGCCTCAATTGCCCAATTTTTATTACGACATGGCAAAGCTCCAGAGAACGCGCAGGTCGGAAAGG # Right flank : GT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACACGCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 36755-36905 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000185.1 Streptomyces sp. SID5474 SID5474.c185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36755 29 100.0 32 ............................. TTCTTCCTCGACCTGGTCGAGCGCACGCTGTT 36816 29 100.0 32 ............................. CCTGGGCCGGATGCCCCAACTACACCGAGCCC 36877 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GAAGTCCCCACGCGGGTGGGGGTGAGCCG # Left flank : CTGAAGATGTGGTCGTGTGATCAACGCCACAGCGAAGTCGCGGTGAATGTCGAGAACAGTGTTTCGGTGACTCGAGAAGAACCCGGGCGGTTGCCCACCTGTCTCGTCCATAAGAAAGCGGCCGAGCCGCAGCTCTCAATCAGCAGCGAAGGCGAGCCACCGGAGATTCCGGCCGCCCATCGCCGCCCGGGTCGCGAGACACCATAGGACAGCGAGGACGGCCCCGGGGCGCAGTTCAGGCAGCTTCACTGGTACGGACCGAAGCGATCGGGTTTTCGGGGTCGGGACTCGGTAGCGTGGTGTCTCACGGTGGAATCATTCCGGTTGGTCTGGGAGTGGTTGCCCTACCAAGGTGGTTCGGCAGGTGACCAACCTCTTCGCGGACAGGACGCGAGGAAAGAACTTGCTGGTCAGGCAGCATTCAGGAAGGCTTTTTGCCTCAATAGCCGAATTAACATTACGAAATGGCATTGCTCCCAGAAACGTGTAGGTCGGGAAGG # Right flank : GACCGGCGGGCGGGCGTCGAGGACCGCGTTCACGAAGTCCCTACGCAGATCTCGAAAGGGCCTTTGCCGCCCACACGCGCACGCGACACCTCAACTCATAGGTAGACATAGCAGATTAGATGCTTACAAAATTCTTGATAAGCATGAAGTAATCAGTATGGGATTTTCCGGCCAGTCGGTCTGGCGACGGACATGATCGCCATGCGGGAGCGCGGATTTTGAGGTGCCAACTACCTCGCCCCTCTGCGCCCGCGGCGGACCCCACGAGTCGTCGTTCGCGCCATCGACCGGTCACGTCCTGCTGTTCAGCTACTGCCTTGACCGACGGGTACCTGACGCGGGGGAAGGTAAATTTCACCACGTACCGGGCGATATTTCTTGTACTCGTTACGGTGAAGAGCCAACCGTACCGGCCACGCGTTCTGCCCCTTCAGCGGCTTAGACGGCTTGTGCAAGGCTGGCCCTGCTTATCCCAGTACGCCACAGTAGGCAGGGGCCCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACGCGGGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 3 47709-49750 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIJ01000185.1 Streptomyces sp. SID5474 SID5474.c185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47709 29 96.6 32 ............................T GCACGCATGCATGTGACGGGCCTCGGCGCGTC 47770 29 100.0 32 ............................. TCGTGGTCTCTGCGCCCGTTGATGGCACACGC 47831 29 100.0 32 ............................. GCCGGCCCGTACACGGACTGGAAGATCAGCAG 47892 29 96.6 32 ............................A TCGATACCGTCGCGATCCTGGACCCCAAAGGC 47953 29 100.0 32 ............................. TGACGACCCTCGCGAGCGAGATGCGCACCGGC 48014 29 100.0 32 ............................. CCACACGCGACGCCCGGGGCGCCGGCCTGCTG 48075 29 100.0 32 ............................. TCCCGCACGACGGTCCGGCGCCGGATCACGGA 48136 29 100.0 32 ............................. CCCGGTCTCCCGTGTGTCGTCCCCCGTTGCCA 48197 29 100.0 32 ............................. AACCGACTTGTATTCCTCGTACACCCGCATAC 48258 29 100.0 32 ............................. CATCGCGGGCGCGGTGAACAGGGCGATCAGCA 48319 29 100.0 32 ............................. TAGGTCAGCGTCACCGCAGCGCCCATCGGCGT 48380 29 100.0 32 ............................. GTTCTCGATCGCGTCGGCGGCTTTGTGGAACA 48441 29 96.6 32 ............................A TGTACATGCCCTTCTTCGGGCTGCTGTACCCC 48502 29 100.0 32 ............................. ATGCCCAAGGTGATGGGCGCGATGGTGTCCGG 48563 29 100.0 32 ............................. CCCCGACCGGGATTCCGGTCGGGGCTTCGTCG 48624 29 100.0 32 ............................. GGCCGTGTCAAGCTTTTCGAGGCGGGCCCGCT 48685 29 100.0 32 ............................. GCTCGTTCAACCGTTGAGCCGTTTGCGGCACC 48746 29 100.0 32 ............................. CGCGTGCCGCTCGACGAGGCGACCCTGGAGCG 48807 29 100.0 32 ............................. CTGCACGATGGCGCCCTTTCGGGGGTGATCGG 48868 29 100.0 32 ............................. TCGGTCCGGGGTCCAGCCCCGGGCCCGCATCC 48929 29 100.0 32 ............................. GGGCTGCCGGACAGGCCCTACGGCCTGGAGGA 48990 29 96.6 32 ............................A CGAGACAGAGTGCCTCCTGCCCATGTCCGTCC 49051 29 100.0 32 ............................. TGACCGCCACGCTCGCCGACCTGCGGCCCCTC 49112 29 100.0 32 ............................. GACCTTTACGGCGGTTGACCGAGAGATCCCCC 49173 29 100.0 32 ............................. GACTGGACCAGCAACGCCGTCCGGACCGCGCG 49234 29 100.0 32 ............................. TCGTCAACGGATGTGCATGGTCTGGGCATGGC 49295 29 100.0 32 ............................. CAGCGTGTTCCCGGGATCCTCGCCGTCAACCC 49356 29 100.0 32 ............................. CCCATCCCGTTCACCTCCGAGTTGATCGTCTC 49417 29 100.0 32 ............................. GTTGAGCGCGTACGCCACGTCGAGCACACCAT 49478 29 100.0 32 ............................. TCGACCTGCCCGATGCCCTCGGACGCGTACAG 49539 29 100.0 32 ............................. TTGATCCTGGTCTCGCCCGTATCGGTGATGAT 49600 29 100.0 32 ............................. CGTCCGAGTACCACGAGCTGTACGTCCGCAAG 49661 29 96.6 32 ............................A GCAGTAGTTCCGCTCCTCGACGTGCTCCACGA 49722 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.5 32 GAAGTCCCCACGCAGGTGGGGGTGAGCCG # Left flank : CGGCCGATCACGCTTTCGGCGGCACGTCCGGCATGGCCAGGGCGCGCGTGGGCGCGTCGAATCGTCGTTCGATCTCGTGGTTCCAGGCTCGTATGGCCCGATCCTGGATTTCGAGGGCATGTCGGTGTTCGGGGCGCAGCCGGGGCCGTACGACCCCGAATGCCTCGATGCGCAGGGGTACCGTGCGCAGGGGGAGGGTGGGGTGGATCTCCTGGAGGCGGTCGACGAAGTCCGTCATGTCGCGGTCCAGGTTCGTGTCGTCCGGCGCGGTGAAGGTCGCGTAGGCGTAGAGGTCGATGCCTGTGGCGAGTAGTTGCGCGAAGAGTTCGAAAGGGTTTGTGTGACTAAATGGGCGTATGGATCGGGATGGGTGGTGCAGGAGGGGAGTGACGAGTGCGGAAACCTGGTGATCAGGTGCTATTCAGGAACGTTTCTTGCCTCAATGGCCCATCTTAGATCACGACATGGCAAAGCCTGTGAGAATGTGCAGGTCAGCAAGG # Right flank : | # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACGCAGGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA //