Array 1 163456-160925 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNV01000031.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016014 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163455 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163394 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163333 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163272 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163211 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163150 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163089 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163028 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162967 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162906 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162845 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162784 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162723 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162662 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162601 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162540 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162479 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162418 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162357 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162296 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162235 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162174 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162113 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162052 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161991 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161930 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161869 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161808 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161747 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161686 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161625 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161564 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161503 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161442 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161381 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161320 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161259 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161198 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161137 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161076 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161015 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160954 29 93.1 0 A...........T................ | A [160927] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182250-179963 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNV01000031.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016014 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182249 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182188 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182127 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182066 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 182005 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181944 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181883 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181822 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181761 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181700 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181639 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181578 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181517 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181456 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181395 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181334 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181273 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181212 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181151 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181090 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181029 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180968 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180907 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180846 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180785 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180723 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180662 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180601 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180540 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180479 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180417 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180356 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180295 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180234 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180173 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180112 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180051 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179990 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //