Array 1 10129-6838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQA01000077.1 Methanosarcina mazei strain 1.F.A.1A.3 scaffold43_1_size26087-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 10128 37 100.0 37 ..................................... AGTGACGGGGAGACTTGGAGACTGCCCGCCGGCACGA 10054 37 100.0 35 ..................................... ATAAAATATATCGGCATGCGTATCCAGAATTTCAG 9982 37 100.0 35 ..................................... TCAGAGGCGAGATGCTTGATACTGAAATTGGGTAT 9910 37 100.0 34 ..................................... GAAATTACGCACCTTATAGACACAAACTTTTCAA 9839 37 100.0 34 ..................................... CCCCAATCTACTGAGGAGATCCCGAATCCCTGAG 9768 37 100.0 34 ..................................... CGTCTGTGGGCATGAATCCGGCGTTTGTTACCTG 9697 37 100.0 35 ..................................... TCATAAGATACTGTAAATAGATAGGATCAAGGGAC 9625 37 100.0 39 ..................................... TTACATTATACTCTATTTGTGTTATTATATCTATATTAT 9549 37 100.0 35 ..................................... TAAACACTCTGCAACAACTGAGTATGCTAATCCAA 9477 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 9405 37 100.0 36 ..................................... CGGCGACTCCGGTAAATTCATACAAAGTTGTAGAAG 9332 37 100.0 36 ..................................... CTATTTTTAGAAGGGATCTATGATATCAATACCCGG 9259 37 100.0 37 ..................................... AGTTCGTGTCAGGGAATAGTTTGTGATAATCTGATGT 9185 37 100.0 34 ..................................... TGATAACGCCTTTTGCTGCATCCCTTGAAGTGTT 9114 37 100.0 35 ..................................... TTTCAATTACCACATTAGCTTCTAACTGTTCAATT 9042 37 100.0 35 ..................................... ATGCCCAGCCCTCGACACCCGGACATTGATCTTGA 8970 37 100.0 34 ..................................... AAAAATTTAGTTTTGACAGCAAGCCGGGATTCTG 8899 37 100.0 35 ..................................... ACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAA 8827 37 100.0 36 ..................................... CAACGGATTAGGACCACGAAGAAAAGAATTTTGAGT 8754 37 100.0 36 ..................................... CAGATGCTACTCTTGCGGCATCGGGAGACAGTCTCA 8681 37 100.0 35 ..................................... CCCGGCCCCGTTGTGACCTCACAGAATATATTCAT 8609 37 100.0 35 ..................................... TTAAAAAACACTGTGAAAATCTGAAATACATTGAT 8537 37 100.0 34 ..................................... CTGTCGAATGTGTCTGCAAATCTTGTGTTAAGCG 8466 37 100.0 36 ..................................... ATAGATTGTTCAGTTGTCAATCCGTTGTCAGCTTGT 8393 37 100.0 38 ..................................... TTTATATGTTAACACTGTTAACGACTGTCTCAAAAAAA 8318 37 100.0 35 ..................................... TAAAAAAGAAATCAATAAGAGAATAACGTTTTTCA 8246 37 100.0 35 ..................................... TATCTTTGAAAAAATCCGTATGTACGGGAAGCTTC 8174 37 100.0 36 ..................................... CTTCATCTAGTTTATTCCGCAAAAGCTCCTTTTCTG 8101 37 100.0 37 ..................................... GTGGTCCTATGATCAATGCAAGATAGCCGGGATTGAT 8027 37 100.0 36 ..................................... TTTGGATGGCTTGCCGTCCTCTATACCTTTCATCTT 7954 37 100.0 35 ..................................... CAGCTAAGGTTTTACTCATATCGTGTGGCTCCGAC 7882 37 100.0 35 ..................................... ATTGATACGGAAGTGATGCGGTATAAGCTCCCGTT 7810 37 100.0 34 ..................................... CTGCCCTCAAGGATCAGGCTTTAGAGGTTGCAAA 7739 37 100.0 38 ..................................... TACCTTATTGATACTTTCCCAGATAGCGTATAAAAGCC 7664 37 100.0 36 ..................................... AAATTGCTGTACCTTCTATAAAGTATAATGATTTAT 7591 37 100.0 35 ..................................... TAAAGAGGGATGATAAATTATGATTACAATCGTAG 7519 37 100.0 36 ..................................... CGTCGGTGGGCATGTATCCCGCGTTTGTTACCTGTT 7446 37 100.0 31 ..................................... TGTCACAATTGTAGTGATATTAATAGCCCGT 7378 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 7307 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 7236 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 7164 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 7092 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 7019 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 6946 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 6874 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ======================================= ================== 46 37 99.6 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 2045-399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQA01000034.1 Methanosarcina mazei strain 1.F.A.1A.3 scaffold44_1_size25521-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2044 37 97.3 36 ..................C.................. AAATTTTCACAGTGTTTTTTAATAAATGTCTGACTG 1971 37 97.3 37 ..................C.................. ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 1897 37 94.6 37 .....A............C.................. TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 1823 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 1750 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 1676 37 100.0 37 ..................................... TGAAGGAAAACATCCGTGAGCCTGTACGGATACCCTT 1602 37 100.0 35 ..................................... CCCATTCGTGGCCCACCCCTCCAGGGTTTGAAGCT 1530 37 100.0 38 ..................................... TAAAAAAACTTGATGAGATTATTAACCCCAGCCCAGCA 1455 37 100.0 35 ..................................... TTGTCCTTGGTTTGGATTGTGAAGCCTTGAAGTAA 1383 37 100.0 34 ..................................... ATGAAAATCTAAACGATGAATCTAATACACTTCC 1312 37 100.0 35 ..................................... AAAGAAAGTATGACGGCACAGCAGGTATAATTAAC 1240 37 100.0 34 ..................................... TCGTTATCGATTATACTGACCGTGATAATTTACG 1169 37 100.0 37 ..................................... TCCCTGCATTTCTGATCGTATTTTGTAAAAGAATAGA 1095 37 100.0 38 ..................................... GTACACTTAGCATGTCCTCTAAACTCGCTTTTTCCGTT 1020 37 97.3 39 ..................C.................. CACGGTAACGTTTTTTTATGTCAAAAAAATAATCCGGAT 944 37 97.3 34 ..................C.................. CTTGGTTACTTTGTGGACCTGGGCGAATCCACAG 873 37 97.3 38 ..................C.................. AATCTGCTATATTATCCAGTATTACTCCATTAATTACT 798 37 97.3 34 ..................C.................. TAACTCTGAGCATAAGAAAGAATTTCGTGATCTG 727 37 97.3 36 ..................C.................. TTACAACGTCTGCAAGCTCTTCTTTCATGTGTTCGT 654 37 94.6 35 .....C............C.................. TTCTATGAACGAGATTCCTGTTACTCTTTTTGAGA 582 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 510 37 75.7 37 TG...A...GT..C....C.......G.........T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC T [494] 435 37 83.8 0 .....AT.A..................A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 96.8 36 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTACAACGGGAGCGCAGAGGGTCACGAATACCCCTTCCTTTAGGTAGGGGATGAAGTGAACCCTCGCCTCTTCGTTTTTCTCTTTAAATCTCT # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //