Array 1 313-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGP01000020.1 Megasphaera genomosp. type_1 str. 28L contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 312 28 100.0 33 ............................ TCGTGCTAATTCATAGCCTTTGCCTGTAATGCC 251 28 100.0 33 ............................ TTGGTGCTTGATTCAATCTTGGCAATGCGTATG 190 28 100.0 34 ............................ CCGGACGCATGGTCAAAATGTGGCAAGAAGCATG 128 28 100.0 33 ............................ TTGATAAGAAAGACGCGAAAGAAGGGCAGAGGG 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 5 28 100.0 34 GTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : ACAAGAATCTCGTTTTTATTGTTGCGGACTGTCGCTTTCAAGAAAAGGAAGCAAAGGAGCTTCATATTCAAGAAATTGAAGCGTTGATAATTAAATGGCAGCCGGAAAGAAAAGCTTTCGTATGCGGTGAGCAATGGAAAGAAAAAGTCGGTGCCGAAAATAAAGAAGGAGATGTATGGAAAAAGTTTTTGCGATTTACAAAAAAAGAACCAATCGTTGTTTATGATGACGGGCAACTGATGAATTATATGAAACAAGAAGAAAAGGCCCGCAGAGAAACTATCATTCGTACCATGTATAGTTTGGAAAAATATGTCAAACGAGAAAAAGTGCTTATGGATTATAGCTTAAAGAACGTGTGTAAAGCTTATGGAATAGGAGACAAGACAGAACAACGTAGCAAAACGAAGGTGGAAATTTTAAGTGAGCTCGCAACAAAAGTGAATGGATTTATGAAACGTCTGGAGAAGGAAAAGGCATAAAAAGGGGATTTTTTTACT # Right flank : CCGCGTCAAAGGCAAATCGCTGTTCGCTGCCGCCGTTCTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-431 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGP01000016.1 Megasphaera genomosp. type_1 str. 28L contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 33 ............................ TCAATAGCCCGCTCGTATCTTGCTCGTAAGAAC 94 28 100.0 33 ............................ CACGGACATGCGGATCGGGTAGTGTGCTGCAGG 155 28 100.0 33 ............................ TTATCATGAAAGTGGTGAGAGTACATGGGAAAA 216 28 100.0 33 ............................ CGGAATCATTTGCGGGGCTACACAACCAAGGCA 277 28 100.0 33 ............................ TCAATCAAGCCTTTATAGCCAAGCTGAAATTGG G [287] 339 28 100.0 33 ............................ CGCCACGCAAGAGCAGGCTAACAGTTTAACAAA 400 27 89.3 0 .................A.....-..T. | ATTTT [419] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TCTGGGAAAAAGCCGTGAAGCACAAACGGAGAG # Right flank : CTGCTTTCGGACTTTGTCCGGGGAGATGGTGGGGGGAAGCGAAAAAAAGAGGAGCTGCTTTCCTATGCAAGAATGGTAGGAAAGCGGCTCTTTTTTTGTAAGATGTACTATTAATATTCAGGAGGGCGGGTGTTTTTGGTGTGCGGCATAACCATATCCGCACCGGGATAGGTATGGTAGTGTACGGCAGGGCCGGTGAAACCGCGCCCGACTACTTCGGAGGCATCGCTGATAATCATAAAGGCGGAGGGGTCTACTTTGTTGATAATATCTTTTATTTTAGAGATTTCCGTTAATTTAATAACGGCATAAATGATGCGTTTGTCCTGCATTGTATAGGCGCCTTGCCCGTAAATATAGGTGGCGCCGTGTCCGATGTAGCGCATGAGAATATTGGCGATTTCTTCGGCGCGGTTGGAGATAATAATGACGGATTTTCGTTGTTTCATGCCGATAACGACTTTGTTGGTAATAAAGGTGGCGATGGCAATGGCAATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //