Array 1 685-2502 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAII01000026.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22790, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 685 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 751 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 817 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 883 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 949 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 1015 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 1081 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1147 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1213 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1279 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1345 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1411 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1477 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1543 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1609 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1675 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 1741 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG 1807 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 1873 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 1939 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 2005 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 2071 36 100.0 30 .................................... AGCCAGATTTCGGAAAACCCTGCGGGCTTT 2137 36 100.0 30 .................................... GACATCAAACTGGGTATAGCGGTTGTGGCT 2203 36 100.0 30 .................................... ACGCCGAACTCGTCCTTCACGCGGCGGACA 2269 36 100.0 30 .................................... AAATGCGTGTGGGTGTGGTCGTCGATTTGT 2335 36 100.0 30 .................................... AAATTTGAAAATTTCTATATTTTGGTTGTG 2401 36 100.0 30 .................................... AAACCAAAAAACGCATCTTCCTGATGGCGC 2467 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //