Array 1 800293-799332 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085962.1 Campylobacter rectus strain FDAARGOS_1549 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 800292 29 100.0 41 ............................. TTATAATCGAAGCCAAAGAAAATTTCATAAAGAATTTTGAG 800222 29 100.0 38 ............................. TTCGGATCGGGCTCTCCGTTTGTTTTGGCTATGGCTAT 800155 29 100.0 39 ............................. TCGCAACCAGCGCCAAGGCTCTATCATCCGTCCTTTGGC 800087 29 100.0 37 ............................. TACCGCTTTATGCACGGTGTAGTATTGCGAGAGCTAG 800021 29 100.0 38 ............................. TGCAAATTCAAAAAATTCTTTCGGAGTAGGGCAAAAGT 799954 29 100.0 39 ............................. TGATGATACTGTTGTATTGTTGCCAGAATTTTGAGCTAG 799886 29 100.0 37 ............................. TTAAATTCGTTTGCGATGTTTAACGTAGACGCTAGCC 799820 29 100.0 36 ............................. CACGTTAAAACTAGTTGTCTGAGAATTTTCATAAGA 799755 29 86.2 36 ..........G....GCC........... TTTTCAGTTGCTACTTCTTCAAAATCTTTATCAGTG 799690 29 96.6 37 ...............G............. TTTATCAAACCGGGATATCTAAGGAGGGCATGGCCTA 799624 29 100.0 36 ............................. CATCGATGAGGATAGCCATCCTCTTGAAATAGATGT 799559 29 93.1 36 ...............A....A........ CGGTATAATGTCGTTTAACATAGCTTTATTGAGGGC 799494 29 96.6 36 ...............G............. TGCGCACTAGGGAAGCGATATTGCCCTAGCCAGATC 799429 29 100.0 38 ............................. CCCGCATGATGATAATACACAGATGGTTCAGGCACCTG 799362 29 79.3 0 A..............G......A.G..TG | A,A [799339,799341] ========== ====== ====== ====== ============================= ========================================= ================== 15 29 96.8 38 GTTAAATTTTACTCCTTTGGGGTTTGAAA # Left flank : TATGGATTTACGGTAATGTTTTTTAGAAACGACTACCCTAAGCACCGACGCTTTCGGTGTTTGAGAGGATTTATGACTACGGGCTTGAGTTGTTTTGATCCCGCATTTTTAGGTAATTTTATTGCGGTACATCGTAAAATAGCCTCTATGCGTCTTGAGATTTTATTATTTGACGGCTCGAACGGCTTGCTAAATTCGTATCGAGATATCGGACTTTAGGTAAAATAATCCGCTGCCGCTAAATGCTTTGGCTTCGTGTATTTAACTCGACTTTGGATAAAACGATCGGCTGTAGATGATTTTGCAATGATGCGGCCGGTTTTATCGCTTGCATTTTTAGGCGCGCTTGAGTTATGCCGATAAAGCTTTTTATAAGATTTTAAAAAGGGCGAAATTTGGGGTGTTTCGCGTTAGTTTGGTTTTATATTTTAGTCAAATTTAAGGCGTAAAAATATAAACTTTTTATTTTGATAGCCATTAAAATGTATGTTTTAGTGCGG # Right flank : AAACGCATATCGGCCAAGTATTTCGGGATTACCGCTGCTCTAGCGTGGTTTTTAGCTCCGCCTGTGGTTATTTCGCCTCTTACATCTGCCGCATATAAGGCTTTAAATTCGTTAGCTAATCTTTTTAAAGAAACCTGTTATTTCGTGGCACCGCTTCGCTTGTTTTCTATCTTTATGAGATAGAATTTAAGCCTTGGGAGGTGATGAGCCTATAGCTTTACTTATTTCGCTTAGATTTCCGTAGAGATTATTAAAATTCTGTTGCAAGTGATACGCCTATTGCTGCAAGTAAATTTTAGTATGTCTATGGGGTCGCCGTGGCTTTTGTTATGGTCTAACCGCCAACTGTATGTTTATTATTAAATTAATATCCCTTTCAAGGCGAGGTAAATTTAAAATTTCTACTTTTTAACAAAATAGAAAAGTAGCATTTAAGAAAATAATATAAAATTTTTTAAAAAGTCTTCTTTTCTTAAGTTTTTTGCAAAGAGTAGATTATG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTTTACTCCTTTGGGGTTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 995513-992077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085962.1 Campylobacter rectus strain FDAARGOS_1549 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 995512 30 100.0 36 .............................. GGATGATTTCTTGCTACTATACCCTGAGTATATGTA 995446 30 100.0 36 .............................. ACGGAGGTTTCGTCGGCGGCGCTATAAACATAGCAA 995380 30 100.0 33 .............................. TTGTATTTTTACTCTACTACCAAAGATAATTAT 995317 30 100.0 37 .............................. ATCATAAATTTCAATGTCTCGTTTAAATTCGCTCAAA 995250 30 100.0 37 .............................. AGCGCAAGACGCATAGCAAAAATCACAAATATCGAAA 995183 30 100.0 35 .............................. GCTTCTGTTATAAGTCTGTCTAATTTAGATTGTAG 995118 30 100.0 36 .............................. AAGCCGAGTAGCGCAATGGTAATGAGGCTAGAGCGA 995052 30 100.0 35 .............................. TTTGGCATATATGAATGATAAGGGCGGCAAACCTA 994987 30 100.0 36 .............................. GCTTGTCCTCGTCCATCGTCTTTTTTACGTTATGGA 994921 30 100.0 36 .............................. CTTTTAGCTTTGGCTGCAGCTGGGTTATTTGCACTC 994855 30 100.0 35 .............................. ATATGAGGCGCTGGAGACACTACTTTAAGATTATT 994790 30 100.0 37 .............................. GAGATAGAAACACAATTAGAGTTGGGTATAAGTCAGT 994723 30 100.0 34 .............................. CTTTATCAGACGTACTGCCTAAATTAGATGATTT 994659 30 100.0 36 .............................. GGTCAAATTTTGCCTTGAGATACGCCCCGTCTATCA 994593 30 100.0 37 .............................. GGTCAAATTTTGCCTTGAGATACGCCCCGTCTATCAG 994526 30 100.0 35 .............................. TTCCGTATTCCTCGGCAATAAATAGCTTATAATCA 994461 30 100.0 32 .............................. AAAAACGGCGTAACGCCCAAGCCTAAATTTAT 994399 30 100.0 34 .............................. CGTATTCTTCGCATACTTGATTTTCGGGCATTAT 994335 30 100.0 39 .............................. CTATGTTTATCTAGAACATTTCTGCCACTCTCTTCATTA 994266 30 100.0 35 .............................. CTTAGAGAAATAATAGCCTATCGTATAGGAATAGG 994201 30 100.0 34 .............................. TTTACAAACTGATTTATACCGTCGCGGATACCGT 994137 30 100.0 36 .............................. AATAAACTTAATGGTGAAACTATAGATGTGCTTACA 994071 30 100.0 36 .............................. TTTTACGAATAATTTGCCTTATGCCTTTCGCATAGA 994005 30 100.0 34 .............................. CAGACGCTGCCCGAAGAAACGAGAAAAACATACG 993941 30 100.0 34 .............................. CACCAAGCCCAATTCACATAGATAAGAAAGTCGG 993877 30 100.0 35 .............................. TACGATCGAGGAGATGGGCAAAATTTTAAGAGCGG 993812 30 100.0 37 .............................. AACTAATAGCCTTAAAATTTAAAGACGGACAAGAATG 993745 30 100.0 34 .............................. TTGTCAAGATCGAGTATGGTTAGCTCGACGCCGG 993681 30 100.0 36 .............................. ATTTTAAAAGATTTTTCATTTGGGCGCTATAAGGAC 993615 30 100.0 36 .............................. GGCTTGCCGTCTTTGCCGATTTCGGGTTTGATGAGA 993549 30 100.0 34 .............................. TGGGCTTTTGCTTTTTCCACCTTCTCTGCGTCTT 993485 30 100.0 34 .............................. GCTATTTCGCTCTCTTCTGTCTCTATTTGACTCA 993421 30 100.0 35 .............................. TTGTTCCGCTATAGGTTCTACTTGGAATCCTGGCG 993356 30 100.0 35 .............................. AGTCTATCTAAATTCGTTTAAAATTTCCACCTCTA 993291 30 100.0 34 .............................. AATAGAAATTCGAATATAAATGTACTAAAGTACA 993227 30 100.0 34 .............................. GCATTTTTGCTCCTTAAAATTTGATTTTCTCGGT 993163 30 100.0 39 .............................. TCTTTTTTGAATAGTCAATGGTCGAAATTTCAGGCTCCC 993094 30 100.0 37 .............................. AACACCATAAGCAACGAAGCGAAAAAAGCCGAGAAGT 993027 30 100.0 37 .............................. GATTTACCCTCTTTGATATAGATTTCTTGCTGTGCTT 992960 30 100.0 35 .............................. AATCTGATGAGGGGGATTTTCATCTGAATTCTTCT 992895 30 100.0 34 .............................. AAACGGCAAGCAAGTCTAAAAAGTCTAAGATTTA 992831 30 100.0 36 .............................. TTGGCTTTTAAATTTGGTATGGATTTGACAAACTCG 992765 30 100.0 36 .............................. TTTCATTTGATTTCTTAAGATTTTCATTAAGAGCAT 992699 30 96.7 36 .........C.................... TATTACAGTTTGCTTTATCAAGCTTCGAATAATAAT 992633 30 96.7 36 .........C.................... TTGTATTTCGTCGAGTCCCGCGGCTTTAAGCTCAAC 992567 30 100.0 37 .............................. CATTTAGGATCATTGGGATTTTTCTTGCAAAATTCAT 992500 30 100.0 35 .............................. TCCGCCCAAAACTCGCGCAGTTTAGCTTTGATATT 992435 30 100.0 37 .............................. CTCCAAACACTCTCTCATCAAAACCAAACGGTTCAAA 992368 30 100.0 36 .............................. GCCGCAGCATATCAAGACAATATTTTTCGCCTTTAG 992302 30 100.0 35 .............................. AAAATCAAGCCTGAACCAACCTAATATCAAGCGCA 992237 30 100.0 35 .............................. AAGAAAAAAGAGCGAGATAAGTGCGTAGTGGTGGG 992172 30 100.0 36 .............................. ACGCGACGTATTCTACTACCTCAAACTCCGTGTTCT 992106 30 83.3 0 ..GT..................C..T..G. | ========== ====== ====== ====== ============================== ======================================= ================== 53 30 99.6 36 GTTAAAATTTACTCCGTTGGAGTTTGAAAC # Left flank : TATCTTGGTTGCATTTTGATGATTTGATTTTAGAGCCTTGACTTCATCAAAATGTGGCATAAAAACCGCTATGCATTTACGGTCAAATTTGACCTATGCGTCTTTGGCTGTTTTGGTGTTTTACTCCCAGCGTTGAGAAAATTCGCATCAAATTTGACTTATGTGTCTTTACCGCGGTATTGGTTTTTGCGCTAAAATGGCGTTTGTGATTTTACTTTGGACGTTTGTGATAAAATATAAAATACACCCTACTTATAAAATTTGCTTTGATCGCTATAGCGGGTTGAATGTTGTTAATTTGCTCTTACCGCAACGGGACATTTGATTTCTAAGTGCCCTTTTTAAATCTAAACTATGTCGATAAAGCTTTTTCTAAGATTTTAGAAATGATGAAATTTAGGGTATTTCGTATCGATACTATTTTGTTTTTTATGCAAATTTAAGGCGTAAAAATATAGACTTTGAGTTTTAATAGCCCTAAAAATGCATATTTTGGTGCT # Right flank : CCGGTGTCGGTATCCCCGCCAAGCTCATAAAATTCTCGGCAAATTTGCGCAAAACCGCCCATAAAACAAGCTTAAGCTAAATTTTACAAAGCCGCGTATAAAACTTACTCAATCCAAAAAGCCAAACCGCCGTTTAAATTCGTAAAATAGCGTAGAAAAATCACCCAAACCAAAAACACATCGTTCAAATTCAAAATCCGTTACAAAAAACCGCTTGTCTCGCCAAATTTAACCCCGGTAGCTCAAAATTTACACATATTTTTAAGTTCGGTTAAAAAAATTTTATTATTTATTTTAGTTTTATATTTTTTTAAATATACTTGAAAAATTTTAAAAATTTAAAGGCAAATCTATGCTCACCGACCTCGTAAGCTCTATAAATTCGTTCCTTTGGGGGCCGTATTTCCTCATCGCGCTACTTTGCGGCACCGGACTTTACTTCACGATCAGGCTGCGTTTCGTGCAGATCTTTAAGTTTAAAATGGGGCTTCATAGGCTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 1121033-1123103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085962.1 Campylobacter rectus strain FDAARGOS_1549 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1121033 30 100.0 35 .............................. TCCAGAAAGCCAAAGCGACGCTTTTAAAAAGTTTT 1121098 30 100.0 35 .............................. TAACGTTGCTTATAATGAAGTTTTAAAACGCTTAA 1121163 30 100.0 39 .............................. TCGATACCGGACACGGCTTGTTTGATTTGCTCGTAGACC 1121232 30 100.0 35 .............................. CGACTACAAGAGGCGCGCTCAAAAAGTCGAAATCT 1121297 30 100.0 35 .............................. TTATTTTAACTTTCACGAGACAAGGCATGGGCGTA 1121362 30 100.0 36 .............................. ATCCGTGCGTTTTTACTGCAAATTTAGAAAATCAAG 1121428 30 100.0 34 .............................. TTGCCGAAAACAAGTCCGTTACAAATGCCTCTTT 1121492 30 100.0 37 .............................. AACTGGTTTATGCCCAGTTCTTGTAATTTCGCAGCGA 1121559 30 100.0 35 .............................. TCGGTAATATAATAGAAATTGTCCTTCTTGTATAA 1121624 30 100.0 36 .............................. GTAAAAAACAGCTATCGTCAAAGGGGGTTTGGCGAT 1121690 30 100.0 37 .............................. CCCATCATACTTACGTTTGAAGAATTGGCCGCGATTA 1121757 30 100.0 34 .............................. CTTGTTAGTCTTATGTTGGCTATTGTTTTTCAAA 1121821 30 100.0 34 .............................. AACGCCACAGCGCATCAACTCATCCTCTCCGAGG 1121885 30 100.0 35 .............................. CTTAGGTATTGGAGATAGTTCAGCCCCTCTTTCAG 1121950 30 100.0 35 .............................. AAAACAAAGGAGTAAATCAAGGTGTTAAAACTTGA 1122015 30 100.0 34 .............................. TATACAAAAGAAAAATTATCATCCAAAAAATAAA 1122079 30 100.0 37 .............................. GTCAATGAAAAAGCTAACGGACTATCAGATAGCGTTT 1122146 30 100.0 36 .............................. AACATCGCGAACGAATTTACAAAACTATCCTTGACG 1122212 30 100.0 37 .............................. TCGGAGCGGTAGCCGGAGCCCTCATAGGCGGAGCATT 1122279 30 100.0 36 .............................. TTACACCGCCAACGCTCGGTTTCTCCACCCATTGGC 1122345 30 100.0 37 .............................. CCGCTGTAGTCGATTTTGCCAATAAACCAAATATCGT 1122412 30 100.0 36 .............................. AAATACTCTTGAGTATTCTCGCAATCATCGAATTGC 1122478 30 100.0 34 .............................. AGGTAGAAAAGCTTTTCGCCCTCGATCTCCTCGC 1122542 30 100.0 35 .............................. TCCCCGTCATTCCTGAAGGAGTTGTAGACTTGGTA 1122607 30 100.0 37 .............................. CGTTTGAAATAGCTTGCGATCTAATCGAACGAGCGGC 1122674 30 100.0 36 .............................. GCAAAGATGAATTAACAGACAATAAAACGGTATTTG 1122740 30 100.0 37 .............................. CCGTAGGCTTTCCGCATACTACGCAAAAGGGCTGTCT 1122807 30 100.0 36 .............................. AAAATCTTAGCACCTAGCCAATTTTTAGGCGTAGCT 1122873 30 100.0 37 .............................. AACGTAACTACAAAACAACTAAGAAGCACCTAAAACC 1122940 30 100.0 34 .............................. CGGCTAATTCCCGCAGCTTCTATAATCTTTTGAG 1123004 30 100.0 36 .............................. TTTTTTACAGCTTTTTACGCTAGGCGTTTCAGCTAG 1123070 30 93.3 0 ......................GG...... | AGGA [1123090] ========== ====== ====== ====== ============================== ======================================= ================== 32 30 99.8 36 GTTAAAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GATGCGCCTTATGAGGGATTTAGGTGGGGATAAATTTGATATTTTGTCTGTAAGAGGCAGCAAGTATCTTGGTTGCATTTTGATGATTTGATTTTAGCGCCTTGACTTCATTAAAATGTGGCATAAAAACCGCTACGCATTTACGGTCAAATTTGACCTATGCGCCTTTGGCTGCGGTATTGGTTTTTGCACTAAAACAGCGTTTGTGATTTTGCTTTGGATGTTTGTGATAAAATATAAAATGCACCCGACTTATAAAATTTGCTTTGATCGCTATGGTGAGTTGGATGTTGTTAATTTGCTCTTACCGTAACGGGACATTTGATCTATAGGTGCCCTTTTTAAATCTAAACTATGTCGATAAAGCTTTTTCTAAGATTTTAGAAATGATGAAATTTAGGGTATTTCGTATCGATACTATTTTGCTTTTTATACAAATTTAAGGCGTAAAAATATAGACTTTGAGTTTTAATAGCCCTAAAAATGCATATTTTGGTGCT # Right flank : CTCTCAAAGCTCACGTTTTTGGCCTTGCTTTGGCGTTAATTCTTCTTTATCGGAGCCAAAGCGCTTTTGGGTTCATTTAAGCGCTTAAACGTCTGTCTCGTTTTATTTCCTTGGGTCCTAAAACCGCCGAGCAAGCCGACTCCGCTTAAATTTAGCATCTCGGACATCATCGCCCAAATGTTTCGATCCGTTTTGCCGGAGAAAAACGTACGTCAAAAAACCGCCAAAACAAATTTCACTCGTCAAACAGCCCTTTCTCAAAGCTTTTCACGCGAAAGCTGCGCCTTTGCAGCGGCGAGTCGCCCAGCCTCGCGATCGCGTCCAGATGCGCCTTCGTGCCGTAGCCCTTATGCGCGGCGTATCCGTAGCCGCCGTGCACGCCGTCCCACGCTCTCATCAGTACGTCGCGGCTTACTTTGGCTAGGATGCTGGCTGCACTTACCTGCGCGACTTTGCCGTCGGCTCCGACCATGGTTTTTACGCCCGTACCGTAGTTTGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //