Array 1 1094522-1099454 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017630.1 Clostridium perfringens strain CBA7123 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1094522 29 100.0 38 ............................. AAATACAAGGATATACTTGACTATAAATTAGGGGACAC 1094589 29 100.0 37 ............................. TTTTCTTTAATCTTTTAGTATTTTCACATGTTTTTAA 1094655 29 100.0 36 ............................. ACTTAGATAAATAAGATTGACTTATCTTTATTTTTT 1094720 29 100.0 37 ............................. CATAATAGAATTGAATGATGACTTTGGTAAAGCTTTG 1094786 29 100.0 36 ............................. TTCAAACTAACTAAAACAATAAGTAAAAACTAAGTA 1094851 29 100.0 36 ............................. TTAAATAATCCTTTTGAAAATATATGGGACAAAATT 1094916 29 100.0 36 ............................. CAACTATAGGAATAGAAGGAATTAACTTAATTACTC 1094981 29 100.0 36 ............................. CCATAAGGTAAGGCACTTAATTATATCTCGCAAATA 1095046 29 100.0 37 ............................. TGGCTATGGGAGAAGATCAATTTGTCGATGATGATGT 1095112 29 100.0 36 ............................. TTAGGCATACTCTCTAAAACTTTAATTTCAGCACTA 1095177 29 100.0 36 ............................. TTTTTAAAGTCGTTGTTATAATTTAAGTACATTTTA 1095242 29 100.0 36 ............................. TTCTCATTTAGAAGATAACTCATGCAGATACCAAGT 1095307 29 100.0 35 ............................. TATGCAAAGCCAGCCCCAAACAATAATAATATTTG 1095371 29 100.0 37 ............................. AACTGAAATTGATAATTTCATAGTTCCAACTGATATT 1095437 29 100.0 36 ............................. TTATTATTTTTAGAATGGTGGATTTTCATCTTCATT 1095502 29 100.0 36 ............................. TAATTTGAACAACATCTAAATAAATTCCTAAATTAT 1095567 29 100.0 37 ............................. GTTTATGATAGAGATAAATTCAAAACTAACGCTAGAG 1095633 29 100.0 36 ............................. ACAGTTCAGATTTCAGGTTTAAAATTTGTTTCTAAA 1095698 29 100.0 36 ............................. TTAAATGAAAATAAAAGGAGATTGATTAAAATGAGT 1095763 29 100.0 37 ............................. AAATAAATAAAAACTTTAGACATAACAAGCAGACCAC 1095829 29 100.0 36 ............................. TAAAATCACGAGTAGAAGGGAAATTAATAGTATATA 1095894 29 100.0 36 ............................. TTGTTCAACTTTTAAAACTATTCAAAGTGTAATGAG 1095959 29 100.0 37 ............................. ATGGAAACAAAGAAAGATTTCCATAAGAAACAAGCTA 1096025 29 100.0 36 ............................. AATGTAAATATGCGTATGAAAGTTAAACCTCGAAAG 1096090 29 100.0 36 ............................. ACAATAAAGAAATAACCTAAATTATTAGAATATTGT 1096155 29 100.0 36 ............................. GTTGAACTAAATAAATATTTCATTGAAAAGAATTCA 1096220 29 100.0 36 ............................. ATAGGTAATAAAGTAGTTAAGTTTGAAGTAACAGCA 1096285 29 100.0 36 ............................. TTAGTAATATTAGTATTATTTGTATTACTTAAATAT 1096350 29 100.0 36 ............................. AGATTACAACTTGAAAAAATTGAGTTACAAAAATAA 1096415 29 100.0 36 ............................. TATTTTCAAAATTCATGAAAACATTCCTCCTTCAAA 1096480 29 100.0 37 ............................. TTAATTAAATCAGCTCTATACTTAAAAGCATTATCAA 1096546 29 100.0 37 ............................. TAAGCTGTTTTTCTTATGTTTGCTTGTCTTTGTGTAG 1096612 29 100.0 37 ............................. CTAAATATTATAAAATCTTCGTCATTAACTCTTTCAA 1096678 29 100.0 36 ............................. ACACTTTCTAATATGTCATTAGTTTCACACCCTGCA 1096743 29 100.0 36 ............................. ATCTCCGTATCACCTGTCCCGTTATAAATCGGCTTA 1096808 29 100.0 36 ............................. CAGATTATATTTATTTGTTAGCATTCCATAATATTT 1096873 29 100.0 36 ............................. ACTGTATTCTTGCTTATTATGTTTATCAACCTTACC 1096938 29 100.0 37 ............................. TAGTTAGTTCTTGTTATAGTTGCTTCTCTTTGTGTAG 1097004 29 100.0 37 ............................. TCTAAAAATATATGATTTTTAGTTATACTAAAAACTA 1097070 29 100.0 36 ............................. TAATTCGTAAATATATAAATTTTATCATTATACTTT 1097135 29 100.0 37 ............................. TGGTGATAAAAATGGGATTCTGTTCATTTATTTGCTT 1097201 29 100.0 37 ............................. AAGCTTTATCTCTCATAGGTTTAACAAAAGTTTCAAA 1097267 29 100.0 35 ............................. TTTTTTAGTTCTTTTTATTTTTATAAGCGTATCTA 1097331 29 100.0 37 ............................. ATAATAACATCTAATTTATGAGTTAAATTATAATCTC 1097397 29 100.0 41 ............................. AACCTTATCCAAATCAGGAGTAAGAAACCAAGACCAACCAA 1097467 29 100.0 37 ............................. CCGTTAGGCTTTAGAGTTAAAGAAGGTGGTATTGAAA 1097533 29 100.0 37 ............................. CGATGATAAAAATGCAAGCTTAACTATAAGCCATAAG 1097599 29 100.0 36 ............................. TAGCCTGTCCAATTATTTAATTTTCTCATTTTTCTA 1097664 29 100.0 36 ............................. GTATTAGCATCATAATAAAATGTATTTTTCTTGCCA 1097729 29 100.0 36 ............................. GTTAGTGAATATCCAACTGCCTTTTGAACATAATTT 1097794 29 100.0 36 ............................. TAGCCTGAAACATTAAATCTGCTTGCTCATAATCAT 1097859 29 96.6 36 ..................T.......... TTATCAACAGCTGAGGGGATGTATAAATATTGTTTA 1097924 29 100.0 36 ............................. ATAGATATCTATTATTTTTAATAATAATTTTTCTTT 1097989 29 100.0 36 ............................. TGGTTAAATGAAGAATTAAATGAAATAATGAAATTA 1098054 29 100.0 36 ............................. CTATTTACAAGTCCAGTTCCTGCTGCAATAGTATTA 1098119 29 100.0 36 ............................. GTATATTGGACCGAGTGTTTGGAAGGTTGGAGCTTC 1098184 29 100.0 36 ............................. GGGGCAACTGTTATAGATGGTAGAAATATAAAAACT 1098249 29 100.0 36 ............................. ATTGGATCATATTCCTCTAATATTTTTAATAACTCT 1098314 29 100.0 36 ............................. AATTCATTAAGCATAGAGTTCATATAAGTAGTAGTT 1098379 29 100.0 37 ............................. ATAACCTTCATGCTTCTCTCTATGTTATTGCATTCAA 1098445 29 100.0 37 ............................. TTACAATAAATATCTTAGCAAGTAATTTTAAAAAATC 1098511 29 100.0 37 ............................. ACAATAGAAGGAACATCATCAGGAACAGTACCACCAA 1098577 29 100.0 36 ............................. GAAACTTTATACCAATTTATCAAAGATACTTTCTTT 1098642 29 100.0 36 ............................. ATGTTCCAGTTGGTAGAAAAAGAGAAATTGAAGAGA 1098707 29 100.0 37 ............................. TTTTTAACTGAGGTTGAGAGAGTAAAGAAAAGTTGTA 1098773 29 100.0 36 ............................. TAAAATGGCTATTATTCTGCGTAAAATACAGTTTTT 1098838 29 100.0 37 ............................. TAACATCTTTTATCACTATCTTTAACATAATTTGTTA 1098904 29 100.0 36 ............................. TAGCCGGGAAGTCCGAAGAATCCAAATATACCATAC 1098969 29 100.0 35 ............................. TACCCATAGACATAGCTATAGCTGTGAACAAACAT 1099033 29 100.0 36 ............................. TAGCCGGGAAGTCCGAAGAATCCAAATATACCATAC 1099098 29 100.0 36 ............................. TTACCTTCTAAGAATCTATAATCATCTAATAAGTTG 1099163 29 100.0 37 ............................. GTTAATTCTATTATTCTATTTAACTCATTTAATATCG 1099229 29 100.0 36 ............................. AAAACTTGGTTAGATGAAACTAATAATTTTCCTAAA 1099294 29 100.0 37 ............................. ATTATAATTTTAATAAAAGATGTTTTAAATAGAGAAG 1099360 29 96.6 37 ...................A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 1099426 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ========================================= ================== 76 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGACATAATACCTCAATGTATTTATGAGGAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTGTCAGTTGGCCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTTCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATTTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTATAACCAAGTAATATCAATAGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTTAAGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGAACCTAATGCAGGTATATTTCCAACAATGTTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATACTTAATACTTCCGATATATATGATAACATTAAGCTTATTAAGTTATAAGATACTTAAATTTAAACCTCAAAAAAATAAACAAGATGATTAATTTAAGTTTTATAATAAGAATTGAAAAGTAAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAACATATACCTATTAAATTTAGAACTTTGAATCTAATAATATATGTATTTAGCAGCTTACATCTAGTAGCTCTCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATACATCATCATCAATTCTAGCAACAATGACCTTGTTAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //